| Package | Description | 
|---|---|
| net.sourceforge.seqware.common.business | 
 Looks like auto-generated classes for Hibernate. 
 | 
| net.sourceforge.seqware.common.business.impl | 
 Looks like auto-generated implementation for Hibernate classes. 
 | 
| net.sourceforge.seqware.common.dao | 
 More hibernate auto-generated. 
 | 
| net.sourceforge.seqware.common.dao.hibernate | 
 More hibernate auto-generated. 
 | 
| net.sourceforge.seqware.common.model | 
 Hibernate model classes for the metadb. 
 | 
| net.sourceforge.seqware.common.security | 
 Interface that unifies model objects that have the concept of permissions. 
 | 
| net.sourceforge.seqware.webservice.resources | 
 Base classes for web resources. 
 | 
| net.sourceforge.solexatools | 
 Portal stuff, to be assessed. 
 | 
| net.sourceforge.solexatools.util | 
 Portal stuff, to be assessed. 
 | 
| net.sourceforge.solexatools.webapp.controller | 
 Portal stuff, to be assessed. 
 | 
| Modifier and Type | Method and Description | 
|---|---|
Registration | 
RegistrationService.updateDetached(Registration registration)
 updateDetached. 
 | 
| Modifier and Type | Method and Description | 
|---|---|
Integer | 
ExperimentService.insert(Registration registration,
      Experiment experiment)
 insert. 
 | 
Integer | 
FileService.insert(Registration registration,
      File file)
 insert. 
 | 
Integer | 
InvoiceService.insert(Registration registration,
      Invoice invoice)
 insert. 
 | 
Integer | 
IUSService.insert(Registration registration,
      IUS ius)
 insert. 
 | 
Integer | 
LaneService.insert(Registration registration,
      Lane lane)
 insert. 
 | 
Integer | 
ProcessingService.insert(Registration registration,
      Processing processing)
 insert. 
 | 
Integer | 
SampleService.insert(Registration registration,
      Sample sample)
 insert. 
 | 
Integer | 
SequencerRunService.insert(Registration registration,
      SequencerRun sequencerRun)
 insert. 
 | 
void | 
ProcessingService.insert(Registration registration,
      SequencerRun sequencerRun,
      Processing processing)
 insert. 
 | 
Integer | 
SequencerRunService.insert(Registration registration,
      SequencerRunWizardDTO sequencerRun)
 insert. 
 | 
Integer | 
StudyService.insert(Registration registration,
      Study study)
 insert. 
 | 
Integer | 
WorkflowService.insert(Registration registration,
      Workflow workflow)
 insert. 
 | 
Integer | 
WorkflowParamService.insert(Registration registration,
      WorkflowParam workflowParam)
 insert. 
 | 
Integer | 
WorkflowParamValueService.insert(Registration registration,
      WorkflowParamValue workflowParamValue)
 insert. 
 | 
Integer | 
WorkflowRunService.insert(Registration registration,
      WorkflowRun workflowRun)
 insert. 
 | 
void | 
WorkflowRunParamService.insert(Registration registration,
      WorkflowRunParam workflowRunParam)
 insert. 
 | 
Integer | 
WorkflowRunService.insert(Registration registration,
      WorkflowRun workflowRun,
      SortedSet<WorkflowRunParam> workflowRunParams,
      Map<String,List<File>> allSelectedFiles)
 insert. 
 | 
Integer | 
LaneService.insertLane(Registration registration,
          Sample sample,
          UploadSequence uploadSequence,
          FileType fileType)
 insertLane. 
 | 
List<Experiment> | 
ExperimentService.list(Registration registration)
 list. 
 | 
List<ExperimentLibraryDesign> | 
ExperimentLibraryDesignService.list(Registration registration)
 list. 
 | 
List<Workflow> | 
WorkflowService.list(Registration registration)
 list. 
 | 
List<Platform> | 
PlatformService.list(Registration registration)
 list. 
 | 
List<LibrarySelection> | 
LibrarySelectionService.list(Registration registration)
 list. 
 | 
List<Organism> | 
OrganismService.list(Registration registration)
 list. 
 | 
List<Invoice> | 
InvoiceService.list(Registration registration)
 list. 
 | 
List<Study> | 
StudyService.list(Registration registration)
 list. 
 | 
List<SequencerRun> | 
SequencerRunService.list(Registration registration)
 list. 
 | 
List<WorkflowRun> | 
WorkflowRunService.list(Registration registration)
 list. 
 | 
List<LibraryStrategy> | 
LibraryStrategyService.list(Registration registration)
 list. 
 | 
List<LibrarySource> | 
LibrarySourceService.list(Registration registration)
 list. 
 | 
List<StudyType> | 
StudyTypeService.list(Registration registration)
 list. 
 | 
List<Study> | 
StudyService.list(Registration registration,
    Boolean isAcs)
 list. 
 | 
List<SequencerRun> | 
SequencerRunService.list(Registration registration,
    Boolean isAsc)
 list. 
 | 
List<WorkflowRun> | 
WorkflowRunService.list(Registration registration,
    Boolean isAsc)
 list. 
 | 
List<Invoice> | 
InvoiceService.list(Registration registration,
    InvoiceState state)
 list. 
 | 
List<File> | 
LaneService.listFile(Registration reqistration,
        String typeNode,
        List<File> list,
        String[] ids,
        String[] statuses)
 listFile. 
 | 
List<Workflow> | 
WorkflowService.listMyShared(Registration registration)
 listMyShared. 
 | 
List<WorkflowRun> | 
WorkflowRunService.listMyShared(Registration registration)
 listMyShared. 
 | 
List<Study> | 
StudyService.listMyShared(Registration registration,
            Boolean isAcs)
 listMyShared. 
 | 
List<WorkflowRun> | 
WorkflowRunService.listMyShared(Registration registration,
            Boolean isAsc)
 listMyShared. 
 | 
List<Workflow> | 
WorkflowRunService.listRelatedWorkflows(Registration registration)
 listRelatedWorkflows. 
 | 
List<WorkflowRun> | 
WorkflowRunService.listRunning(Registration registration)
 listRunning. 
 | 
List<WorkflowRun> | 
WorkflowRunService.listRunning(Registration registration,
           Boolean isAsc)
 listRunning. 
 | 
List<Sample> | 
SampleService.listSample(Registration registration)
 listSample. 
 | 
List<Workflow> | 
WorkflowService.listSharedWithMe(Registration registration)
 listSharedWithMe. 
 | 
List<Study> | 
StudyService.listSharedWithMe(Registration registration)
 listSharedWithMe. 
 | 
List<WorkflowRun> | 
WorkflowRunService.listSharedWithMe(Registration registration)
 listSharedWithMe. 
 | 
List<Study> | 
StudyService.listSharedWithMe(Registration registration,
                Boolean isAcs)
 listSharedWithMe. 
 | 
List<WorkflowRun> | 
WorkflowRunService.listSharedWithMe(Registration registration,
                Boolean isAsc)
 listSharedWithMe. 
 | 
List<WorkflowRun> | 
WorkflowRunService.listSharedWithMeWithSample(Registration registration)
 listSharedWithMeWithSample. 
 | 
List<Study> | 
StudyService.listStudyHasFile(Registration registration,
                String metaType,
                Boolean isAcs)
 listStudyHasFile. 
 | 
void | 
ExperimentService.update(Registration registration,
      Experiment experiment)
 update. 
 | 
void | 
FileService.update(Registration registration,
      File file)
 update. 
 | 
void | 
InvoiceService.update(Registration registration,
      Invoice invoice)
 update. 
 | 
void | 
IUSService.update(Registration registration,
      IUS ius)
 update. 
 | 
void | 
LaneService.update(Registration registration,
      Lane lane)
 update. 
 | 
void | 
ProcessingService.update(Registration registration,
      Processing processing)
 update. 
 | 
void | 
SampleService.update(Registration registration,
      Sample sample)
 update. 
 | 
void | 
SequencerRunService.update(Registration registration,
      SequencerRun sequencerRun)
 update. 
 | 
void | 
StudyService.update(Registration registration,
      Study study)
 update. 
 | 
void | 
WorkflowService.update(Registration registration,
      Workflow workflow)
 update. 
 | 
void | 
WorkflowParamService.update(Registration registration,
      WorkflowParam workflowParam)
 update. 
 | 
void | 
WorkflowParamValueService.update(Registration registration,
      WorkflowParamValue workflowParamValue)
 update. 
 | 
void | 
WorkflowRunService.update(Registration registration,
      WorkflowRun workflowRun)
 update. 
 | 
void | 
WorkflowRunService.update(Registration registration,
      WorkflowRun workflowRun,
      List<Integer> laneIds)
 update. 
 | 
void | 
WorkflowRunParamService.update(Registration registration,
      WorkflowRunParam workflowRunParam)
 update. 
 | 
Registration | 
RegistrationService.updateDetached(Registration registration)
 updateDetached. 
 | 
Experiment | 
ExperimentService.updateDetached(Registration registration,
              Experiment experiment)
 updateDetached. 
 | 
File | 
FileService.updateDetached(Registration registration,
              File file)
 updateDetached. 
 | 
Invoice | 
InvoiceService.updateDetached(Registration registration,
              Invoice invoice)
 updateDetached. 
 | 
IUS | 
IUSService.updateDetached(Registration registration,
              IUS ius)
 updateDetached. 
 | 
Lane | 
LaneService.updateDetached(Registration registration,
              Lane lane)
 updateDetached. 
 | 
Processing | 
ProcessingService.updateDetached(Registration registration,
              Processing processing)
 updateDetached. 
 | 
Sample | 
SampleService.updateDetached(Registration registration,
              Sample sample)
 updateDetached. 
 | 
SequencerRun | 
SequencerRunService.updateDetached(Registration registration,
              SequencerRun sequencerRun)
 updateDetached. 
 | 
Study | 
StudyService.updateDetached(Registration registration,
              Study study)
 updateDetached. 
 | 
Workflow | 
WorkflowService.updateDetached(Registration registration,
              Workflow workflow)
 updateDetached. 
 | 
WorkflowParam | 
WorkflowParamService.updateDetached(Registration registration,
              WorkflowParam workflowParam)
 updateDetached. 
 | 
WorkflowParamValue | 
WorkflowParamValueService.updateDetached(Registration registration,
              WorkflowParamValue workflowParamValue)
 updateDetached. 
 | 
WorkflowRunParam | 
WorkflowRunParamService.updateDetached(Registration registration,
              WorkflowRunParam workflowRunParam)
 updateDetached. 
 | 
void | 
FileUploadService.uploadFile(Experiment experiment,
          UploadFile uploadFile,
          FileType fileType,
          Registration registration)
 uploadFile. 
 | 
void | 
FileUploadService.uploadFile(IUS ius,
          UploadFile uploadFile,
          FileType fileType,
          Registration registration)
 uploadFile. 
 | 
void | 
FileUploadService.uploadFile(Lane lane,
          UploadFile uploadFile,
          FileType fileType,
          Registration registration)
 uploadFile. 
 | 
void | 
FileUploadService.uploadFile(Processing processing,
          UploadFile uploadFile,
          FileType fileType,
          Registration registration)
 uploadFile. 
 | 
void | 
FileUploadService.uploadFile(Sample sample,
          UploadFile uploadFile,
          FileType fileType,
          Registration registration)
 uploadFile. 
 | 
void | 
FileUploadService.uploadFile(SequencerRun sequencerRun,
          UploadFile uploadFile,
          FileType fileType,
          Registration registration)
 uploadFile. 
 | 
void | 
FileUploadService.uploadFile(Study study,
          UploadFile uploadFile,
          FileType fileType,
          Registration registration)
 uploadFile. 
 | 
| Modifier and Type | Method and Description | 
|---|---|
Registration | 
RegistrationServiceImpl.updateDetached(Registration registration)
 updateDetached. 
 | 
| Modifier and Type | Method and Description | 
|---|---|
Integer | 
ExperimentServiceImpl.insert(Registration registration,
      Experiment experiment)
 insert. 
 | 
Integer | 
FileServiceImpl.insert(Registration registration,
      File file)
 insert. 
 | 
Integer | 
InvoiceServiceImpl.insert(Registration registration,
      Invoice invoice)
 insert. 
 | 
Integer | 
IUSServiceImpl.insert(Registration registration,
      IUS ius)
 insert. 
 | 
Integer | 
LaneServiceImpl.insert(Registration registration,
      Lane lane)
 insert. 
 | 
Integer | 
ProcessingServiceImpl.insert(Registration registration,
      Processing processing)
 insert. 
 | 
Integer | 
SampleServiceImpl.insert(Registration registration,
      Sample sample)
 insert. 
 | 
Integer | 
SequencerRunServiceImpl.insert(Registration registration,
      SequencerRun sequencerRun)
 insert. 
 | 
void | 
ProcessingServiceImpl.insert(Registration registration,
      SequencerRun sequencerRun,
      Processing processing)
 insert. 
 | 
Integer | 
SequencerRunServiceImpl.insert(Registration registration,
      SequencerRunWizardDTO sequencerRun)
 insert. 
 | 
Integer | 
StudyServiceImpl.insert(Registration registration,
      Study study)
 insert. 
 | 
Integer | 
WorkflowServiceImpl.insert(Registration registration,
      Workflow workflow)
 insert. 
 | 
Integer | 
WorkflowParamServiceImpl.insert(Registration registration,
      WorkflowParam workflowParam)
 insert. 
 | 
Integer | 
WorkflowParamValueServiceImpl.insert(Registration registration,
      WorkflowParamValue workflowParamValue)
 insert. 
 | 
Integer | 
WorkflowRunServiceImpl.insert(Registration registration,
      WorkflowRun workflowRun)
 insert. 
 | 
void | 
WorkflowRunParamServiceImpl.insert(Registration registration,
      WorkflowRunParam workflowRunParam)
 insert. 
 | 
Integer | 
WorkflowRunServiceImpl.insert(Registration registration,
      WorkflowRun workflowRun,
      SortedSet<WorkflowRunParam> workflowRunParams,
      Map<String,List<File>> allSelectedFiles)
 insert. 
 | 
Integer | 
LaneServiceImpl.insertLane(Registration registration,
          Sample sample,
          UploadSequence uploadSeqence,
          FileType fileType)
 insertLane. 
 | 
List<Study> | 
StudyServiceImpl.list(Registration registration)
 list. 
 | 
List<Invoice> | 
InvoiceServiceImpl.list(Registration registration)
 list. 
 | 
List<WorkflowRun> | 
WorkflowRunServiceImpl.list(Registration registration)
 list. 
 | 
List<LibrarySource> | 
LibrarySourceServiceImpl.list(Registration registration)
 list. 
 | 
List<Workflow> | 
WorkflowServiceImpl.list(Registration registration)
 list. 
 | 
List<LibrarySelection> | 
LibrarySelectionServiceImpl.list(Registration registration)
 list. 
 | 
List<Experiment> | 
ExperimentServiceImpl.list(Registration registration)
 list. 
 | 
List<Organism> | 
OrganismServiceImpl.list(Registration registration)
 list. 
 | 
List<StudyType> | 
StudyTypeServiceImpl.list(Registration registration)
 list. 
 | 
List<LibraryStrategy> | 
LibraryStrategyServiceImpl.list(Registration registration)
 list. 
 | 
List<SequencerRun> | 
SequencerRunServiceImpl.list(Registration registration)
 list. 
 | 
List<ExperimentLibraryDesign> | 
ExperimentLibraryDesignServiceImpl.list(Registration registration)
 list. 
 | 
List<Platform> | 
PlatformServiceImpl.list(Registration registration)
 list. 
 | 
List<Study> | 
StudyServiceImpl.list(Registration registration,
    Boolean isAcs)
 list. 
 | 
List<WorkflowRun> | 
WorkflowRunServiceImpl.list(Registration registration,
    Boolean isAsc)
 list. 
 | 
List<SequencerRun> | 
SequencerRunServiceImpl.list(Registration registration,
    Boolean isAsc)
 list. 
 | 
List<Invoice> | 
InvoiceServiceImpl.list(Registration registration,
    InvoiceState state)
 list. 
 | 
List<File> | 
LaneServiceImpl.listFile(Registration reqistration,
        String typeNode,
        List<File> list,
        String[] ids,
        String[] statuses)
 listFile. 
 | 
List<WorkflowRun> | 
WorkflowRunServiceImpl.listMyShared(Registration registration)
 listMyShared. 
 | 
List<Workflow> | 
WorkflowServiceImpl.listMyShared(Registration registration)
 listMyShared. 
 | 
List<Study> | 
StudyServiceImpl.listMyShared(Registration registration,
            Boolean isAcs)
 listMyShared. 
 | 
List<WorkflowRun> | 
WorkflowRunServiceImpl.listMyShared(Registration registration,
            Boolean isAsc)
 listMyShared. 
 | 
List<Workflow> | 
WorkflowRunServiceImpl.listRelatedWorkflows(Registration registration)
 listRelatedWorkflows. 
 | 
List<WorkflowRun> | 
WorkflowRunServiceImpl.listRunning(Registration registration)
 listRunning. 
 | 
List<WorkflowRun> | 
WorkflowRunServiceImpl.listRunning(Registration registration,
           Boolean isAsc)
 listRunning. 
 | 
List<Sample> | 
SampleServiceImpl.listSample(Registration registration)
 listSample. 
 | 
List<Study> | 
StudyServiceImpl.listSharedWithMe(Registration registration)
 listSharedWithMe. 
 | 
List<WorkflowRun> | 
WorkflowRunServiceImpl.listSharedWithMe(Registration registration)
 listSharedWithMe. 
 | 
List<Workflow> | 
WorkflowServiceImpl.listSharedWithMe(Registration registration)
 listSharedWithMe. 
 | 
List<Study> | 
StudyServiceImpl.listSharedWithMe(Registration registration,
                Boolean isAcs)
 listSharedWithMe. 
 | 
List<WorkflowRun> | 
WorkflowRunServiceImpl.listSharedWithMe(Registration registration,
                Boolean isAsc)
 listSharedWithMe. 
 | 
List<WorkflowRun> | 
WorkflowRunServiceImpl.listSharedWithMeWithSample(Registration registration)
 listSharedWithMeWithSample. 
 | 
List<Study> | 
StudyServiceImpl.listStudyHasFile(Registration registration,
                String metaType,
                Boolean isAsc)
 listStudyHasFile. 
 | 
void | 
ExperimentServiceImpl.update(Registration registration,
      Experiment experiment)
 update. 
 | 
void | 
FileServiceImpl.update(Registration registration,
      File file)
 update. 
 | 
void | 
InvoiceServiceImpl.update(Registration registration,
      Invoice invoice)
 update. 
 | 
void | 
IUSServiceImpl.update(Registration registration,
      IUS ius)
 update. 
 | 
void | 
LaneServiceImpl.update(Registration registration,
      Lane lane)
 update. 
 | 
void | 
ProcessingServiceImpl.update(Registration registration,
      Processing processing)
 update. 
 | 
void | 
SampleServiceImpl.update(Registration registration,
      Sample sample)
 update. 
 | 
void | 
SequencerRunServiceImpl.update(Registration registration,
      SequencerRun sequencerRun)
 update. 
 | 
void | 
StudyServiceImpl.update(Registration registration,
      Study study)
 update. 
 | 
void | 
WorkflowServiceImpl.update(Registration registration,
      Workflow workflow)
 update. 
 | 
void | 
WorkflowParamServiceImpl.update(Registration registration,
      WorkflowParam workflowParam)
 update. 
 | 
void | 
WorkflowParamValueServiceImpl.update(Registration registration,
      WorkflowParamValue workflowParamValue)
 update. 
 | 
void | 
WorkflowRunServiceImpl.update(Registration registration,
      WorkflowRun workflowRun)
 update. 
 | 
void | 
WorkflowRunServiceImpl.update(Registration registration,
      WorkflowRun workflowRun,
      List<Integer> laneIds)
 update. 
 | 
void | 
WorkflowRunParamServiceImpl.update(Registration registration,
      WorkflowRunParam workflowRunParam)
 update. 
 | 
Registration | 
RegistrationServiceImpl.updateDetached(Registration registration)
 updateDetached. 
 | 
Experiment | 
ExperimentServiceImpl.updateDetached(Registration registration,
              Experiment experiment)
 updateDetached. 
 | 
File | 
FileServiceImpl.updateDetached(Registration registration,
              File file)
 updateDetached. 
 | 
Invoice | 
InvoiceServiceImpl.updateDetached(Registration registration,
              Invoice invoice)
 updateDetached. 
 | 
IUS | 
IUSServiceImpl.updateDetached(Registration registration,
              IUS ius)
 updateDetached. 
 | 
Lane | 
LaneServiceImpl.updateDetached(Registration registration,
              Lane lane)
 updateDetached. 
 | 
Processing | 
ProcessingServiceImpl.updateDetached(Registration registration,
              Processing processing)
 updateDetached. 
 | 
Sample | 
SampleServiceImpl.updateDetached(Registration registration,
              Sample sample)
 updateDetached. 
 | 
SequencerRun | 
SequencerRunServiceImpl.updateDetached(Registration registration,
              SequencerRun sequencerRun)
 updateDetached. 
 | 
Study | 
StudyServiceImpl.updateDetached(Registration registration,
              Study study)
 updateDetached. 
 | 
Workflow | 
WorkflowServiceImpl.updateDetached(Registration registration,
              Workflow workflow)
 updateDetached. 
 | 
WorkflowParam | 
WorkflowParamServiceImpl.updateDetached(Registration registration,
              WorkflowParam workflowParam)
 updateDetached. 
 | 
WorkflowParamValue | 
WorkflowParamValueServiceImpl.updateDetached(Registration registration,
              WorkflowParamValue workflowParamValue)
 updateDetached. 
 | 
WorkflowRunParam | 
WorkflowRunParamServiceImpl.updateDetached(Registration registration,
              WorkflowRunParam workflowRunParam)
 updateDetached. 
 | 
Integer | 
LaneServiceImpl.updateLane(Sample sample,
          org.springframework.web.multipart.MultipartFile fileOne,
          org.springframework.web.multipart.MultipartFile fileTwo,
          String typeFile,
          String folderStore,
          Registration registration)
 updateLane. 
 | 
void | 
FileUploadServiceImpl.uploadFile(Experiment experiment,
          UploadFile uploadFile,
          FileType fileType,
          Registration registration)
 uploadFile. 
 | 
void | 
FileUploadServiceImpl.uploadFile(IUS ius,
          UploadFile uploadFile,
          FileType fileType,
          Registration registration)
 uploadFile. 
 | 
void | 
FileUploadServiceImpl.uploadFile(Lane lane,
          UploadFile uploadFile,
          FileType fileType,
          Registration registration)
 uploadFile. 
 | 
void | 
FileUploadServiceImpl.uploadFile(Processing processing,
          UploadFile uploadFile,
          FileType fileType,
          Registration registration)
 uploadFile. 
 | 
void | 
FileUploadServiceImpl.uploadFile(Sample sample,
          UploadFile uploadFile,
          FileType fileType,
          Registration registration)
 uploadFile. 
 | 
void | 
FileUploadServiceImpl.uploadFile(SequencerRun sequencerRun,
          UploadFile uploadFile,
          FileType fileType,
          Registration registration)
 uploadFile. 
 | 
void | 
FileUploadServiceImpl.uploadFile(Study study,
          UploadFile uploadFile,
          FileType fileType,
          Registration registration)
 uploadFile. 
 | 
| Modifier and Type | Method and Description | 
|---|---|
Registration | 
RegistrationDAO.findByEmailAddress(String emailAddress)
 findByEmailAddress. 
 | 
Registration | 
RegistrationDAO.findByEmailAddressAndPassword(String emailAddress,
                             String password)
 findByEmailAddressAndPassword. 
 | 
Registration | 
RegistrationDAO.updateDetached(Registration registration)
 updateDetached. 
 | 
| Modifier and Type | Method and Description | 
|---|---|
void | 
RegistrationDAO.insert(Registration registration)
 insert. 
 | 
Integer | 
ExperimentDAO.insert(Registration registration,
      Experiment sequencerRun)
 insert. 
 | 
Integer | 
FileDAO.insert(Registration registration,
      File file)
 insert. 
 | 
Integer | 
InvoiceDAO.insert(Registration registration,
      Invoice invoice)
 insert. 
 | 
Integer | 
IUSDAO.insert(Registration registration,
      IUS obj)
 insert. 
 | 
Integer | 
LaneDAO.insert(Registration registration,
      Lane lane)
 insert. 
 | 
Integer | 
ProcessingDAO.insert(Registration registration,
      Processing processing)
 insert. 
 | 
Integer | 
SampleDAO.insert(Registration registration,
      Sample sample)
 insert. 
 | 
Integer | 
SequencerRunDAO.insert(Registration registration,
      SequencerRun sequencerRun)
 insert. 
 | 
Integer | 
SequencerRunDAO.insert(Registration registration,
      SequencerRunWizardDTO sequencerRun)
 insert. 
 | 
Integer | 
StudyDAO.insert(Registration registration,
      Study sequencerRun)
 insert. 
 | 
Integer | 
WorkflowDAO.insert(Registration registration,
      Workflow workflow)
 insert. 
 | 
Integer | 
WorkflowParamDAO.insert(Registration registration,
      WorkflowParam workflowParam)
 insert. 
 | 
Integer | 
WorkflowParamValueDAO.insert(Registration registration,
      WorkflowParamValue workflowParamValue)
 insert. 
 | 
Integer | 
WorkflowRunDAO.insert(Registration registration,
      WorkflowRun workflowRun)
 insert. 
 | 
void | 
WorkflowRunParamDAO.insert(Registration registration,
      WorkflowRunParam workflowRunParam)
 insert. 
 | 
void | 
WorkflowRunParamDAO.insertFilesAsWorkflowRunParam(Registration registration,
                             WorkflowRun workflowRun,
                             Map<String,List<File>> files)
 insertFilesAsWorkflowRunParam. 
 | 
List<Invoice> | 
InvoiceDAO.list(Registration registration)
 list. 
 | 
List<LibrarySelection> | 
LibrarySelectionDAO.list(Registration registration)
 list. 
 | 
List<LibraryStrategy> | 
LibraryStrategyDAO.list(Registration registration)
 list. 
 | 
List<Organism> | 
OrganismDAO.list(Registration registration)
 list. 
 | 
List<Platform> | 
PlatformDAO.list(Registration registration)
 list. 
 | 
List<Experiment> | 
ExperimentDAO.list(Registration registration)
 list. 
 | 
List<ExperimentLibraryDesign> | 
ExperimentLibraryDesignDAO.list(Registration registration)
 list. 
 | 
List<Workflow> | 
WorkflowDAO.list(Registration registration)
 list. 
 | 
List<LibrarySource> | 
LibrarySourceDAO.list(Registration registration)
 list. 
 | 
List<StudyType> | 
StudyTypeDAO.list(Registration registration)
 list. 
 | 
List<Study> | 
StudyDAO.list(Registration registration,
    Boolean isAcs)
 list. 
 | 
List<WorkflowRun> | 
WorkflowRunDAO.list(Registration registration,
    Boolean isAsc)
 list. 
 | 
List<SequencerRun> | 
SequencerRunDAO.list(Registration registration,
    Boolean isAsc)
 list. 
 | 
List<Invoice> | 
InvoiceDAO.list(Registration registration,
    InvoiceState state)
 list. 
 | 
List<Workflow> | 
WorkflowDAO.listMyShared(Registration registration)
 listMyShared. 
 | 
List<Study> | 
StudyDAO.listMyShared(Registration registration,
            Boolean isAcs)
 listMyShared. 
 | 
List<WorkflowRun> | 
WorkflowRunDAO.listMyShared(Registration registration,
            Boolean isAsc)
 listMyShared. 
 | 
List<Workflow> | 
WorkflowRunDAO.listRelatedWorkflows(Registration registration)
 listRelatedWorkflows. 
 | 
List<WorkflowRun> | 
WorkflowRunDAO.listRunning(Registration registration,
           Boolean isAsc)
 listRunning. 
 | 
List<Sample> | 
SampleDAO.listSample(Registration registration)
 listSample. 
 | 
List<Workflow> | 
WorkflowDAO.listSharedWithMe(Registration registration)
 listSharedWithMe. 
 | 
List<Study> | 
StudyDAO.listSharedWithMe(Registration registration,
                Boolean isAcs)
 listSharedWithMe. 
 | 
List<WorkflowRun> | 
WorkflowRunDAO.listSharedWithMe(Registration registration,
                Boolean isAsc)
 listSharedWithMe. 
 | 
List<Study> | 
StudyDAO.listStudyHasFile(Registration registration,
                String metaType,
                Boolean iaAsc)
 listStudyHasFile. 
 | 
File | 
FileDAO.saveFile(org.springframework.web.multipart.MultipartFile uploadFile,
        String folderStore,
        Registration owner)
 saveFile. 
 | 
void | 
RegistrationDAO.update(Registration registration)
 update. 
 | 
void | 
ExperimentDAO.update(Registration registration,
      Experiment experiment)
 update. 
 | 
void | 
FileDAO.update(Registration registration,
      File file)
 update. 
 | 
void | 
InvoiceDAO.update(Registration registration,
      Invoice invoice)
 update. 
 | 
void | 
IUSDAO.update(Registration registration,
      IUS ius)
 update. 
 | 
void | 
LaneDAO.update(Registration registration,
      Lane lane)
 update. 
 | 
void | 
ProcessingDAO.update(Registration registration,
      Processing processing)
 update. 
 | 
void | 
SampleDAO.update(Registration registration,
      Sample sample)
 update. 
 | 
void | 
SequencerRunDAO.update(Registration registration,
      SequencerRun sequencerRun)
 update. 
 | 
void | 
StudyDAO.update(Registration registration,
      Study study)
 update. 
 | 
void | 
WorkflowDAO.update(Registration registration,
      Workflow workflow)
 update. 
 | 
void | 
WorkflowParamDAO.update(Registration registration,
      WorkflowParam workflowParam)
 update. 
 | 
void | 
WorkflowParamValueDAO.update(Registration registration,
      WorkflowParamValue workflowParamValue)
 update. 
 | 
void | 
WorkflowRunDAO.update(Registration registration,
      WorkflowRun workflowRun)
 update. 
 | 
void | 
WorkflowRunParamDAO.update(Registration registration,
      WorkflowRunParam workflowRunParam)
 update. 
 | 
Registration | 
RegistrationDAO.updateDetached(Registration registration)
 updateDetached. 
 | 
Experiment | 
ExperimentDAO.updateDetached(Registration registration,
              Experiment experiment)
 updateDetached. 
 | 
File | 
FileDAO.updateDetached(Registration registration,
              File file)
 updateDetached. 
 | 
Invoice | 
InvoiceDAO.updateDetached(Registration registration,
              Invoice invoice)
 updateDetached. 
 | 
IUS | 
IUSDAO.updateDetached(Registration registration,
              IUS ius)
 updateDetached. 
 | 
Lane | 
LaneDAO.updateDetached(Registration registration,
              Lane lane)
 updateDetached. 
 | 
Processing | 
ProcessingDAO.updateDetached(Registration registration,
              Processing processing)
 updateDetached. 
 | 
Sample | 
SampleDAO.updateDetached(Registration registration,
              Sample sample)
 updateDetached. 
 | 
SequencerRun | 
SequencerRunDAO.updateDetached(Registration registration,
              SequencerRun sequencerRun)
 updateDetached. 
 | 
Study | 
StudyDAO.updateDetached(Registration registration,
              Study study)
 updateDetached. 
 | 
Workflow | 
WorkflowDAO.updateDetached(Registration registration,
              Workflow workflow)
 updateDetached. 
 | 
WorkflowParam | 
WorkflowParamDAO.updateDetached(Registration registration,
              WorkflowParam workflowParam)
 updateDetached. 
 | 
WorkflowParamValue | 
WorkflowParamValueDAO.updateDetached(Registration registration,
              WorkflowParamValue workflowParamValue)
 updateDetached. 
 | 
WorkflowRun | 
WorkflowRunDAO.updateDetached(Registration registration,
              WorkflowRun workflowRun)
 updateDetached. 
 | 
WorkflowRunParam | 
WorkflowRunParamDAO.updateDetached(Registration registration,
              WorkflowRunParam workflowRunParam)
 updateDetached. 
 | 
| Modifier and Type | Method and Description | 
|---|---|
Registration | 
RegistrationDAOHibernate.findByEmailAddress(String emailAddress)
 findByEmailAddress. 
 | 
Registration | 
RegistrationDAOHibernate.findByEmailAddressAndPassword(String emailAddress,
                             String password)
 findByEmailAddressAndPassword. 
 | 
Registration | 
RegistrationDAOHibernate.updateDetached(Registration registration)
 updateDetached. 
 | 
| Modifier and Type | Method and Description | 
|---|---|
void | 
RegistrationDAOHibernate.insert(Registration registration)
 insert. 
 | 
Integer | 
ExperimentDAOHibernate.insert(Registration registration,
      Experiment experiment)
 insert. 
 | 
Integer | 
FileDAOHibernate.insert(Registration registration,
      File file)
 insert. 
 | 
Integer | 
InvoiceDAOHibernate.insert(Registration registration,
      Invoice invoice)
 insert. 
 | 
Integer | 
IUSDAOHibernate.insert(Registration registration,
      IUS obj)
 insert. 
 | 
Integer | 
LaneDAOHibernate.insert(Registration registration,
      Lane lane)
 insert. 
 | 
Integer | 
ProcessingDAOHibernate.insert(Registration registration,
      Processing processing)
 insert. 
 | 
Integer | 
SampleDAOHibernate.insert(Registration registration,
      Sample sample)
 insert. 
 | 
Integer | 
SequencerRunDAOHibernate.insert(Registration registration,
      SequencerRun sequencerRun)
 insert. 
 | 
Integer | 
SequencerRunDAOHibernate.insert(Registration registration,
      SequencerRunWizardDTO sequencerRun)
 insert. 
 | 
Integer | 
StudyDAOHibernate.insert(Registration registration,
      Study study)
 insert. 
 | 
Integer | 
WorkflowDAOHibernate.insert(Registration registration,
      Workflow workflow)
 insert. 
 | 
Integer | 
WorkflowParamDAOHibernate.insert(Registration registration,
      WorkflowParam workflowParam)
 insert. 
 | 
Integer | 
WorkflowParamValueDAOHibernate.insert(Registration registration,
      WorkflowParamValue workflowParamValue)
 insert. 
 | 
Integer | 
WorkflowRunDAOHibernate.insert(Registration registration,
      WorkflowRun workflowRun)
 insert. 
 | 
void | 
WorkflowRunParamDAOHibernate.insert(Registration registration,
      WorkflowRunParam workflowRunParam)
 insert. 
 | 
void | 
WorkflowRunParamDAOHibernate.insertFilesAsWorkflowRunParam(Registration registration,
                             WorkflowRun workflowRun,
                             Map<String,List<File>> files)
 insertFilesAsWorkflowRunParam. 
 | 
List<Platform> | 
PlatformDAOHibernate.list(Registration registration)
 list. 
 | 
List<Workflow> | 
WorkflowDAOHibernate.list(Registration registration)
 list. 
 | 
List<ExperimentLibraryDesign> | 
ExperimentLibraryDesignDAOHibernate.list(Registration registration)
 list. 
 | 
List<Invoice> | 
InvoiceDAOHibernate.list(Registration registration)
 list. 
 | 
List<Experiment> | 
ExperimentDAOHibernate.list(Registration registration)
 list. 
 | 
List<Organism> | 
OrganismDAOHibernate.list(Registration registration)
 list. 
 | 
List<LibraryStrategy> | 
LibraryStrategyDAOHibernate.list(Registration registration)
 list. 
 | 
List<LibrarySource> | 
LibrarySourceDAOHibernate.list(Registration registration)
 list. 
 | 
List<StudyType> | 
StudyTypeDAOHibernate.list(Registration registration)
 list. 
 | 
List<LibrarySelection> | 
LibrarySelectionDAOHibernate.list(Registration registration)
 list. 
 | 
List<WorkflowRun> | 
WorkflowRunDAOHibernate.list(Registration registration,
    Boolean isAsc)
 list. 
 | 
List<SequencerRun> | 
SequencerRunDAOHibernate.list(Registration registration,
    Boolean isAsc)
 list. 
 | 
List<Study> | 
StudyDAOHibernate.list(Registration registration,
    Boolean isAsc)
 list. 
 | 
List<Invoice> | 
InvoiceDAOHibernate.list(Registration registration,
    InvoiceState state)
 list. 
 | 
List<Workflow> | 
WorkflowDAOHibernate.listMyShared(Registration registration)
 listMyShared. 
 | 
List<WorkflowRun> | 
WorkflowRunDAOHibernate.listMyShared(Registration registration,
            Boolean isAsc)
 listMyShared. 
 | 
List<Study> | 
StudyDAOHibernate.listMyShared(Registration registration,
            Boolean isAsc)
 listMyShared. 
 | 
List<Workflow> | 
WorkflowRunDAOHibernate.listRelatedWorkflows(Registration registration)
 listRelatedWorkflows. 
 | 
List<WorkflowRun> | 
WorkflowRunDAOHibernate.listRunning(Registration registration,
           Boolean isAsc)
 listRunning. 
 | 
List<Sample> | 
SampleDAOHibernate.listSample(Registration registaration)
 listSample. 
 | 
List<Workflow> | 
WorkflowDAOHibernate.listSharedWithMe(Registration registration)
 listSharedWithMe. 
 | 
List<WorkflowRun> | 
WorkflowRunDAOHibernate.listSharedWithMe(Registration registration,
                Boolean isAsc)
 listSharedWithMe. 
 | 
List<Study> | 
StudyDAOHibernate.listSharedWithMe(Registration registration,
                Boolean isAsc)
 listSharedWithMe. 
 | 
List<Study> | 
StudyDAOHibernate.listStudyHasFile(Registration registration,
                String metaType,
                Boolean isAsc)
 listStudyHasFile. 
 | 
File | 
FileDAOHibernate.saveFile(org.springframework.web.multipart.MultipartFile uploadFile,
        String folderStore,
        Registration owner)
 saveFile. 
 | 
void | 
RegistrationDAOHibernate.update(Registration registration)
 update. 
 | 
void | 
ExperimentDAOHibernate.update(Registration registration,
      Experiment experiment)
 update. 
 | 
void | 
FileDAOHibernate.update(Registration registration,
      File file)
 update. 
 | 
void | 
InvoiceDAOHibernate.update(Registration registration,
      Invoice invoice)
 update. 
 | 
void | 
IUSDAOHibernate.update(Registration registration,
      IUS ius)
 update. 
 | 
void | 
LaneDAOHibernate.update(Registration registration,
      Lane lane)
 update. 
 | 
void | 
ProcessingDAOHibernate.update(Registration registration,
      Processing processing)
 update. 
 | 
void | 
SampleDAOHibernate.update(Registration registration,
      Sample sample)
 update. 
 | 
void | 
SequencerRunDAOHibernate.update(Registration registration,
      SequencerRun sequencerRun)
 update. 
 | 
void | 
StudyDAOHibernate.update(Registration registration,
      Study study)
 update. 
 | 
void | 
WorkflowDAOHibernate.update(Registration registration,
      Workflow workflow)
 update. 
 | 
void | 
WorkflowParamDAOHibernate.update(Registration registration,
      WorkflowParam workflowParam)
 update. 
 | 
void | 
WorkflowParamValueDAOHibernate.update(Registration registration,
      WorkflowParamValue workflowParamValue)
 update. 
 | 
void | 
WorkflowRunDAOHibernate.update(Registration registration,
      WorkflowRun workflowRun)
 update. 
 | 
void | 
WorkflowRunParamDAOHibernate.update(Registration registration,
      WorkflowRunParam workflowRunParam)
 update. 
 | 
Registration | 
RegistrationDAOHibernate.updateDetached(Registration registration)
 updateDetached. 
 | 
Experiment | 
ExperimentDAOHibernate.updateDetached(Registration registration,
              Experiment experiment)
 updateDetached. 
 | 
File | 
FileDAOHibernate.updateDetached(Registration registration,
              File file)
 updateDetached. 
 | 
Invoice | 
InvoiceDAOHibernate.updateDetached(Registration registration,
              Invoice invoice)
 updateDetached. 
 | 
IUS | 
IUSDAOHibernate.updateDetached(Registration registration,
              IUS ius)
 updateDetached. 
 | 
Lane | 
LaneDAOHibernate.updateDetached(Registration registration,
              Lane lane)
 updateDetached. 
 | 
Processing | 
ProcessingDAOHibernate.updateDetached(Registration registration,
              Processing processing)
 updateDetached. 
 | 
Sample | 
SampleDAOHibernate.updateDetached(Registration registration,
              Sample sample)
 updateDetached. 
 | 
SequencerRun | 
SequencerRunDAOHibernate.updateDetached(Registration registration,
              SequencerRun sequencerRun)
 updateDetached. 
 | 
Study | 
StudyDAOHibernate.updateDetached(Registration registration,
              Study study)
 updateDetached. 
 | 
Workflow | 
WorkflowDAOHibernate.updateDetached(Registration registration,
              Workflow workflow)
 updateDetached. 
 | 
WorkflowParam | 
WorkflowParamDAOHibernate.updateDetached(Registration registration,
              WorkflowParam workflowParam)
 updateDetached. 
 | 
WorkflowParamValue | 
WorkflowParamValueDAOHibernate.updateDetached(Registration registration,
              WorkflowParamValue workflowParamValue)
 updateDetached. 
 | 
WorkflowRun | 
WorkflowRunDAOHibernate.updateDetached(Registration registration,
              WorkflowRun workflowRun)
 updateDetached. 
 | 
WorkflowRunParam | 
WorkflowRunParamDAOHibernate.updateDetached(Registration registration,
              WorkflowRunParam workflowRunParam)
 updateDetached. 
 | 
| Modifier and Type | Class and Description | 
|---|---|
class  | 
RegistrationDTO  | 
| Modifier and Type | Method and Description | 
|---|---|
Registration | 
SequencerRunWizardDTO.getDomainObject()
 Getter for the field  
domainObject. | 
Registration | 
RegistrationDTO.getDomainObject()
 Getter for the field  
domainObject. | 
Registration | 
Sample.getOwner()
 Getter for the field  
owner. | 
Registration | 
WorkflowRun.getOwner()
 Getter for the field  
owner. | 
Registration | 
File.getOwner()
 Getter for the field  
owner. | 
Registration | 
Workflow.getOwner()
 Getter for the field  
owner. | 
Registration | 
Lane.getOwner()
 Getter for the field  
owner. | 
Registration | 
IUS.getOwner()
 Getter for the field  
owner. | 
Registration | 
SequencerRun.getOwner()
 Getter for the field  
owner. | 
Registration | 
Experiment.getOwner()
 Getter for the field  
owner. | 
Registration | 
Invoice.getOwner()
 Getter for the field  
owner. | 
Registration | 
SequencerRunDTO.getOwner()
 Getter for the field  
owner. | 
Registration | 
Study.getOwner()
 Getter for the field  
owner. | 
Registration | 
Processing.getOwner()
 Getter for the field  
owner. | 
Registration | 
ShareWorkflowRun.getRegistration()
 Getter for the field  
registration. | 
Registration | 
ShareStudy.getRegistration()
 Getter for the field  
registration. | 
| Modifier and Type | Method and Description | 
|---|---|
int | 
Registration.compareTo(Registration t) | 
boolean | 
Sample.givesPermissionInternal(Registration registration,
                       Set<Integer> considered)
Short-circuit permission checking by providing a set of entities that have already been checked 
 | 
boolean | 
WorkflowParam.givesPermissionInternal(Registration registration,
                       Set<Integer> considered)
Short-circuit permission checking by providing a set of entities that have already been checked 
 | 
boolean | 
Expense.givesPermissionInternal(Registration registration,
                       Set<Integer> considered)
Short-circuit permission checking by providing a set of entities that have already been checked 
 | 
boolean | 
WorkflowRun.givesPermissionInternal(Registration registration,
                       Set<Integer> considered)
Short-circuit permission checking by providing a set of entities that have already been checked 
 | 
boolean | 
File.givesPermissionInternal(Registration registration,
                       Set<Integer> considered)  | 
boolean | 
Workflow.givesPermissionInternal(Registration registration,
                       Set<Integer> considered)
Short-circuit permission checking by providing a set of entities that have already been checked 
 | 
boolean | 
Lane.givesPermissionInternal(Registration registration,
                       Set<Integer> considered)  | 
boolean | 
IUS.givesPermissionInternal(Registration registration,
                       Set<Integer> considered)  | 
boolean | 
WorkflowRunParam.givesPermissionInternal(Registration registration,
                       Set<Integer> considered)
Short-circuit permission checking by providing a set of entities that have already been checked 
 | 
boolean | 
Registration.givesPermissionInternal(Registration registration,
                       Set<Integer> considered)
Short-circuit permission checking by providing a set of entities that have already been checked 
 | 
boolean | 
SequencerRun.givesPermissionInternal(Registration registration,
                       Set<Integer> considered)
Short-circuit permission checking by providing a set of entities that have already been checked 
 | 
boolean | 
Experiment.givesPermissionInternal(Registration registration,
                       Set<Integer> considered)  | 
boolean | 
Invoice.givesPermissionInternal(Registration registration,
                       Set<Integer> considered)  | 
boolean | 
WorkflowParamValue.givesPermissionInternal(Registration registration,
                       Set<Integer> considered)
Short-circuit permission checking by providing a set of entities that have already been checked 
 | 
boolean | 
Study.givesPermissionInternal(Registration registration,
                       Set<Integer> considered)
Short-circuit permission checking by providing a set of entities that have already been checked 
 | 
boolean | 
Processing.givesPermissionInternal(Registration registration,
                       Set<Integer> considered)
Short-circuit permission checking by providing a set of entities that have already been checked 
 | 
void | 
SequencerRunWizardDTO.setDomainObject(Registration domainObject)
 Setter for the field  
domainObject. | 
void | 
RegistrationDTO.setDomainObject(Registration domainObject)
 Setter for the field  
domainObject. | 
void | 
Sample.setOwner(Registration owner)
 Setter for the field  
owner. | 
void | 
WorkflowRun.setOwner(Registration owner)
 Setter for the field  
owner. | 
void | 
File.setOwner(Registration owner)
 Setter for the field  
owner. | 
void | 
Workflow.setOwner(Registration owner)
 Setter for the field  
owner. | 
void | 
Lane.setOwner(Registration owner)
 Setter for the field  
owner. | 
void | 
IUS.setOwner(Registration owner)
 Setter for the field  
owner. | 
void | 
SequencerRun.setOwner(Registration owner)
 Setter for the field  
owner. | 
void | 
Experiment.setOwner(Registration owner)
 Setter for the field  
owner. | 
void | 
Invoice.setOwner(Registration owner)
 Setter for the field  
owner. | 
void | 
SequencerRunDTO.setOwner(Registration owner)
 Setter for the field  
owner. | 
void | 
Study.setOwner(Registration owner)
 Setter for the field  
owner. | 
void | 
Processing.setOwner(Registration owner)
 Setter for the field  
owner. | 
void | 
ShareWorkflowRun.setRegistration(Registration registration)
 Setter for the field  
registration. | 
void | 
ShareStudy.setRegistration(Registration registration)
 Setter for the field  
registration. | 
| Modifier and Type | Method and Description | 
|---|---|
boolean | 
PermissionsAware.givesPermission(Registration registration)  | 
boolean | 
PermissionsAware.givesPermission(Registration registration,
               Set<Integer> considered)  | 
abstract boolean | 
PermissionsAware.givesPermissionInternal(Registration registration,
                       Set<Integer> considered)
Short-circuit permission checking by providing a set of entities that have already been checked 
 | 
| Modifier and Type | Field and Description | 
|---|---|
protected Registration | 
BasicResource.registration  | 
protected Registration | 
BasicRestlet.registration  | 
| Modifier and Type | Method and Description | 
|---|---|
static Registration | 
Security.getRegistration(javax.servlet.http.HttpServletRequest request)
 getRegistration. 
 | 
static Registration | 
Security.requireRegistration(javax.servlet.http.HttpServletRequest request,
                   javax.servlet.http.HttpServletResponse response)
 requireRegistration. 
 | 
| Modifier and Type | Method and Description | 
|---|---|
static String | 
TreeNodeHtmlUtil.getAllHtml(Experiment experiment,
          Registration registration,
          Integer openingNodeId,
          String treeType)
 getAllHtml. 
 | 
static String | 
SequencerRunHtmlUtil.getAllHtml(IUS ius,
          Registration registration,
          String openingNodeId,
          boolean isOpenProc,
          boolean isVisibleProc,
          String treeType)
 getAllHtml. 
 | 
static String | 
StudyHtmlUtil.getAllHtml(IUS ius,
          Registration registration,
          String openingNodeId,
          Integer currPosId,
          List<String> listNodeId,
          boolean isOpenProc,
          boolean isVisibleProc,
          String treeType)
 getAllHtml. 
 | 
static String | 
TreeNodeHtmlUtil.getAllHtml(Lane lane,
          Registration registration,
          Integer openingNodeId,
          String treeType)
 getAllHtml. 
 | 
static String | 
SequencerRunHtmlUtil.getAllHtml(Lane lane,
          Registration registration,
          String openingNodeId,
          String treeType)
 getAllHtml. 
 | 
static String | 
SequencerRunHtmlUtil.getAllHtml(Processing processing,
          Registration registration,
          String openingNodeId,
          Integer currPosId,
          List<String> listNodeId,
          boolean isFirstCall,
          boolean isViewCurrentNode,
          String treeType)
 getAllHtml. 
 | 
static String | 
StudyHtmlUtil.getAllHtml(Processing processing,
          Registration registration,
          String openingNodeId,
          Integer currPosId,
          List<String> listNodeId,
          boolean isFirstCall,
          boolean isViewCurrentNode,
          String treeType)
 getAllHtml. 
 | 
static String | 
TreeNodeHtmlUtil.getAllHtml(Sample sample,
          Registration registration,
          Integer openingNodeId,
          String treeType)
 getAllHtml. 
 | 
static String | 
TreeNodeHtmlUtil.getAllHtml(Study study,
          Registration registration,
          String treeType)
 getAllHtml. 
 | 
static String | 
NodeHtmlUtil.getAnalysisWorkflowHtml(WorkflowRun workflowRun,
                       Registration registration,
                       String typeTree,
                       boolean isOpen,
                       boolean isLast,
                       String treeType)
 getAnalysisWorkflowHtml. 
 | 
static String | 
NodeHtmlUtil.getExperimentHtml(Experiment experiment,
                 Registration registration,
                 String typeTree,
                 String openingNodeId,
                 boolean isOpenProc,
                 String treeType)
 getExperimentHtml. 
 | 
static String | 
SequencerRunHtmlUtil.getFileHtml(Processing proc,
           Registration registration)
 getFileHtml. 
 | 
static String | 
StudyHtmlUtil.getFileHtml(Processing proc,
           Registration registration,
           List<String> listStudyNodeId,
           String treeType)
 getFileHtml. 
 | 
static String | 
WorkflowRunHtmlUtil.getFileHtml(Processing proc,
           WorkflowRun workflowRun,
           Registration registration,
           String typeTree)
 getFileHtml. 
 | 
static String | 
SequencerRunHtmlUtil.getHtml(Object obj,
       Registration registration,
       List<String> listSeqencerRunNodeId,
       String treeType)
 getHtml. 
 | 
static String | 
StudyHtmlUtil.getHtml(Object obj,
       Registration registration,
       List<String> listStudyNodeId,
       String treeType)
 getHtml. 
 | 
static String | 
TreeNodeHtmlUtil.getHtml(Object obj,
       Registration registration,
       String treeType)
 getHtml. 
 | 
static String | 
WorkflowRunHtmlUtil.getHtml(Processing processing,
       WorkflowRun workflowRun,
       Registration registration,
       String typeTree,
       List<String> listWorkflowNodeId,
       String treeType)
 getHtml. 
 | 
static String | 
WorkflowRunHtmlUtil.getHtml(Sample sample,
       WorkflowRun workflowRun,
       Registration registration,
       String typeTree)
 getHtml. 
 | 
static String | 
WorkflowRunHtmlUtil.getHtml(WorkflowRun workflowRun,
       Registration registration,
       String typeTree,
       boolean isWorkflowRunWithSample,
       String treeType)
 getHtml. 
 | 
static String | 
NodeHtmlUtil.getIUSHtml(IUS ius,
          Registration registration,
          String typeTree,
          String openingNodeId,
          boolean isOpenProc,
          boolean isVisibleProc,
          String treeType)
 getIUSHtml. 
 | 
static String | 
TreeNodeHtmlUtil.getLaneHtml(Lane lane,
           Registration registration,
           Integer openingNodeId)
 getLaneHtml. 
 | 
static String | 
NodeHtmlUtil.getLaneHtml(Lane lane,
           Registration registration,
           String typeTree,
           String openingNodeId,
           String treeType)
 getLaneHtml. 
 | 
static String | 
TreeNodeHtmlUtil.getNodeHtml(Processing processing,
           Registration registration)
 getNodeHtml. 
 | 
static String | 
NodeHtmlUtil.getNodeHtml(Processing processing,
           Registration registration,
           String typeTree,
           boolean isOpenWfr,
           boolean isOpenProc,
           boolean isVisibleProc,
           boolean isInnerWFR,
           boolean isLastNode,
           String treeType)
 getNodeHtml. 
 | 
static String | 
NodeHtmlUtil.getProcessingHtml(Processing processing,
                 Registration registration,
                 String typeTree,
                 String openingNodeId,
                 String treeType)
 getProcessingHtml. 
 | 
static String | 
TreeNodeHtmlUtil.getSampleHtml(Sample sample,
             Registration registration,
             Integer openingNodeId)
 getSampleHtml. 
 | 
static String | 
NodeHtmlUtil.getSampleHtml(Sample sample,
             Registration registration,
             String typeTree,
             String openingNodeId,
             boolean isEnd,
             boolean isOpenProc,
             String treeType)
 getSampleHtml. 
 | 
static String | 
NodeHtmlUtil.getSequencerRunHtml(SequencerRun sequencerRun,
                   Registration registration,
                   String openingNodeId,
                   String treeType)
 getSequencerRunHtml. 
 | 
static String | 
TreeNodeHtmlUtil.getStydyHtml(Study study,
            Registration registration,
            Integer openingNodeId,
            String treeType)
 getStydyHtml. 
 | 
static String | 
NodeHtmlUtil.getStydyHtml(Study study,
            Registration registration,
            String openingNodeId,
            boolean isOpenProc,
            String treeType)
 getStydyHtml. 
 | 
static String | 
NodeHtmlUtil.getWorkflowRunHtml(WorkflowRun workflowRun,
                  Registration registration,
                  String typeTree,
                  String openingNodeId,
                  String treeType)
 getWorkflowRunHtml. 
 | 
static String | 
NodeHtmlUtil.getWorkflowRunHtmlWithIUSs(WorkflowRun workflowRun,
                          Registration registration,
                          String typeTree,
                          String openingNodeId,
                          String treeType)
 getWorkflowRunHtmlWithIUSs. 
 | 
| Modifier and Type | Method and Description | 
|---|---|
void | 
LoginController.DeleteTempFile(Registration registration)
 DeleteTempFile. 
 | 
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