IUSServiceImpl (SeqWare 1.1.2 API)

java.lang.Object
- net.sourceforge.seqware.common.business.impl.IUSServiceImpl

All Implemented Interfaces:

IUSService
```
public class IUSServiceImpl
extends Object
implements IUSService
```
IUSServiceImpl class.

Version:

$Id: $Id

Author:

boconnor

Field Summary
- Fields inherited from interface net.sourceforge.seqware.common.business.IUSService
  NAME

Constructor Summary

Constructors
Constructor and Description

IUSServiceImpl()
Constructor for IUSServiceImpl.

Constructors
Constructor and Description
`IUSServiceImpl()` Constructor for IUSServiceImpl.

Method Summary

Methods
Modifier and Type	Method and Description
`void`	`delete(IUS ius, boolean deleteRealFiles)` delete.
`List<IUS>`	`find(String sequencerRunName, Integer lane, String sampleName)` find.
`List<IUS>`	`findBelongsToStudy(Study study)` findBelongsToStudy.
`List<IUS>`	`findByCriteria(String criteria, boolean isCaseSens)` findByCriteria.
`IUS`	`findByID(Integer id)` findByID.
`List<IUS>`	`findByOwnerID(Integer registrationId)` findByOwnerID.
`IUS`	`findBySWAccession(Integer swAccession)` findBySWAccession.
`List<File>`	`getFiles(Integer iusId)` getFiles.
`List<File>`	`getFiles(Integer iusId, String metaType)` getFiles.
`Integer`	`insert(IUS obj)` insert.
`Integer`	`insert(Registration registration, IUS ius)` insert.
`boolean`	`isHasFile(Integer iusId)` isHasFile.
`boolean`	`isHasFile(Integer iusId, String metaType)` isHasFile.
`List<IUS>`	`list()` list.
`SortedSet<IUS>`	`listWithHasFile(SortedSet<IUS> list, String metaType)` listWithHasFile.
`void`	`setFileDAO(FileDAO fileDAO)` Setter for the field `fileDAO`.
`void`	`setIUSDAO(IUSDAO dao)` setIUSDAO.
`SortedSet<IUS>`	`setWithHasFile(SortedSet<IUS> list)` setWithHasFile.
`void`	`update(IUS obj)` update.
`void`	`update(Registration registration, IUS ius)` update.
`IUS`	`updateDetached(IUS ius)` updateDetached.
`IUS`	`updateDetached(Registration registration, IUS ius)` updateDetached.

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Constructor Detail
  - IUSServiceImpl
```
public IUSServiceImpl()
```
    Constructor for IUSServiceImpl.
- Method Detail
  - setIUSDAO
```
public void setIUSDAO(IUSDAO dao)
```
    setIUSDAO.
    
    Specified by:
    
    setIUSDAO in interface IUSService
    
    Parameters:
    dao - a IUSDAO object.
  - setFileDAO
```
public void setFileDAO(FileDAO fileDAO)
```
    Setter for the field fileDAO.
    
    Parameters:
    fileDAO - a FileDAO object.
  - insert
```
public Integer insert(IUS obj)
```
    insert.
    
    Specified by:
    
    insert in interface IUSService
    
    Parameters:
    obj -
    
    Returns:
  - delete
```
public void delete(IUS ius,
          boolean deleteRealFiles)
```
    delete.
    
    Specified by:
    
    delete in interface IUSService
    
    Parameters:
    ius -
    deleteRealFiles -
  - update
```
public void update(IUS obj)
```
    update.
    
    Specified by:
    
    update in interface IUSService
    
    Parameters:
    obj -
  - getFiles
```
public List<File> getFiles(Integer iusId)
```
    getFiles.
    
    Specified by:
    
    getFiles in interface IUSService
    
    Parameters:
    iusId - a Integer object.
    
    Returns:
    a List object.
  - getFiles
```
public List<File> getFiles(Integer iusId,
                  String metaType)
```
    getFiles.
    
    Specified by:
    
    getFiles in interface IUSService
    
    Parameters:
    iusId - a Integer object.
    metaType - a String object.
    
    Returns:
    a List object.
  - isHasFile
```
public boolean isHasFile(Integer iusId,
                String metaType)
```
    isHasFile.
    
    Specified by:
    
    isHasFile in interface IUSService
    
    Parameters:
    iusId - a Integer object.
    metaType - a String object.
    
    Returns:
    a boolean.
  - isHasFile
```
public boolean isHasFile(Integer iusId)
```
    isHasFile.
    
    Specified by:
    
    isHasFile in interface IUSService
    
    Parameters:
    iusId - a Integer object.
    
    Returns:
    a boolean.
  - setWithHasFile
```
public SortedSet<IUS> setWithHasFile(SortedSet<IUS> list)
```
    setWithHasFile.
    
    Specified by:
    
    setWithHasFile in interface IUSService
    
    Parameters:
    list - a SortedSet object.
    
    Returns:
    a SortedSet object.
  - listWithHasFile
```
public SortedSet<IUS> listWithHasFile(SortedSet<IUS> list,
                             String metaType)
```
    listWithHasFile.
    
    Specified by:
    
    listWithHasFile in interface IUSService
    
    Parameters:
    list - a SortedSet object.
    metaType - a String object.
    
    Returns:
    a SortedSet object.
  - findByID
```
public IUS findByID(Integer id)
```
    findByID.
    
    Specified by:
    
    findByID in interface IUSService
    
    Parameters:
    id - a Integer object.
    
    Returns:
    a IUS object.
  - findBySWAccession
```
public IUS findBySWAccession(Integer swAccession)
```
    findBySWAccession.
    
    Specified by:
    
    findBySWAccession in interface IUSService
    
    Parameters:
    swAccession - a Integer object.
    
    Returns:
    a IUS object.
  - findByOwnerID
```
public List<IUS> findByOwnerID(Integer registrationId)
```
    findByOwnerID.
    
    Specified by:
    
    findByOwnerID in interface IUSService
    
    Parameters:
    registrationId - a Integer object.
    
    Returns:
    a List object.
  - findByCriteria
```
public List<IUS> findByCriteria(String criteria,
                       boolean isCaseSens)
```
    findByCriteria.
    
    Specified by:
    
    findByCriteria in interface IUSService
    
    Parameters:
    criteria - a String object.
    isCaseSens - a boolean.
    
    Returns:
    a List object.
  - updateDetached
```
public IUS updateDetached(IUS ius)
```
    updateDetached.
    
    Specified by:
    
    updateDetached in interface IUSService
    
    Parameters:
    ius - a IUS object.
    
    Returns:
    a IUS object.
  - findBelongsToStudy
```
public List<IUS> findBelongsToStudy(Study study)
```
    findBelongsToStudy.
    
    Specified by:
    
    findBelongsToStudy in interface IUSService
    
    Parameters:
    study - a Study object.
    
    Returns:
    a List object.
  - list
```
public List<IUS> list()
```
    list.
    
    Specified by:
    
    list in interface IUSService
    
    Returns:
    a List object.
  - update
```
public void update(Registration registration,
          IUS ius)
```
    update.
    
    Specified by:
    
    update in interface IUSService
    
    Parameters:
    registration - a Registration object.
    ius - a IUS object.
  - insert
```
public Integer insert(Registration registration,
             IUS ius)
```
    insert.
    
    Specified by:
    
    insert in interface IUSService
    
    Parameters:
    registration - a Registration object.
    ius - a IUS object.
    
    Returns:
  - updateDetached
```
public IUS updateDetached(Registration registration,
                 IUS ius)
```
    updateDetached.
    
    Specified by:
    
    updateDetached in interface IUSService
    
    Parameters:
    registration - a Registration object.
    ius - a IUS object.
    
    Returns:
    a IUS object.
  - find
```
public List<IUS> find(String sequencerRunName,
             Integer lane,
             String sampleName)
```
    find.
    
    Specified by:
    
    find in interface IUSService
    
    Parameters:
    sequencerRunName - a String object.
    lane - a Integer object.
    sampleName - a String object.
    
    Returns:
    a List object.

Class IUSServiceImpl

Field Summary

Fields inherited from interface net.sourceforge.seqware.common.business.IUSService

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Constructor Detail

IUSServiceImpl

Method Detail

setIUSDAO

setFileDAO

insert

delete

update

getFiles

getFiles

isHasFile

isHasFile

setWithHasFile

listWithHasFile

findByID

findBySWAccession

findByOwnerID

findByCriteria

updateDetached

findBelongsToStudy

list

update

insert

updateDetached

find