IUSService (SeqWare 1.1.2 API)

All Known Implementing Classes:

IUSServiceImpl
```
public interface IUSService
```
IUSService interface.

Version:

$Id: $Id

Author:

boconnor

Field Summary

Fields
Modifier and Type Field and Description

static String NAME
Constant NAME="IUSService"

Fields
Modifier and Type	Field and Description
`static String`	`NAME` Constant `NAME="IUSService"`

Method Summary

Methods
Modifier and Type	Method and Description
`void`	`delete(IUS ius, boolean deleteRealFiles)` delete.
`List<IUS>`	`find(String sequencerRunName, Integer lane, String sampleName)` find.
`List<IUS>`	`findBelongsToStudy(Study study)` findBelongsToStudy.
`List<IUS>`	`findByCriteria(String criteria, boolean isCaseSens)` findByCriteria.
`IUS`	`findByID(Integer id)` findByID.
`List<IUS>`	`findByOwnerID(Integer registrationId)` findByOwnerID.
`IUS`	`findBySWAccession(Integer swAccession)` findBySWAccession.
`List<File>`	`getFiles(Integer iusId)` getFiles.
`List<File>`	`getFiles(Integer iusId, String metaType)` getFiles.
`Integer`	`insert(IUS ius)` insert.
`Integer`	`insert(Registration registration, IUS ius)` insert.
`boolean`	`isHasFile(Integer iusId)` isHasFile.
`boolean`	`isHasFile(Integer iusId, String metaType)` isHasFile.
`List<IUS>`	`list()` list.
`SortedSet<IUS>`	`listWithHasFile(SortedSet<IUS> list, String metaType)` listWithHasFile.
`void`	`setIUSDAO(IUSDAO dao)` setIUSDAO.
`SortedSet<IUS>`	`setWithHasFile(SortedSet<IUS> list)` setWithHasFile.
`void`	`update(IUS ius)` update.
`void`	`update(Registration registration, IUS ius)` update.
`IUS`	`updateDetached(IUS ius)` updateDetached.
`IUS`	`updateDetached(Registration registration, IUS ius)` updateDetached.

- Field Detail
  - NAME
```
static final String NAME
```
    Constant NAME="IUSService"
    
    See Also:
    Constant Field Values
- Method Detail
  - setIUSDAO
```
void setIUSDAO(IUSDAO dao)
```
    setIUSDAO.
    
    Parameters:
    dao - a IUSDAO object.
  - insert
```
Integer insert(IUS ius)
```
    insert.
    
    Parameters:
    ius - a IUS object.
    
    Returns:
  - insert
```
Integer insert(Registration registration,
             IUS ius)
```
    insert.
    
    Parameters:
    registration - a Registration object.
    ius - a IUS object.
    
    Returns:
  - update
```
void update(IUS ius)
```
    update.
    
    Parameters:
    ius - a IUS object.
  - update
```
void update(Registration registration,
          IUS ius)
```
    update.
    
    Parameters:
    registration - a Registration object.
    ius - a IUS object.
  - delete
```
void delete(IUS ius,
          boolean deleteRealFiles)
```
    delete.
    
    Parameters:
    ius -
    deleteRealFiles -
  - findByID
```
IUS findByID(Integer id)
```
    findByID.
    
    Parameters:
    id - a Integer object.
    
    Returns:
    a IUS object.
  - findBySWAccession
```
IUS findBySWAccession(Integer swAccession)
```
    findBySWAccession.
    
    Parameters:
    swAccession - a Integer object.
    
    Returns:
    a IUS object.
  - getFiles
```
List<File> getFiles(Integer iusId)
```
    getFiles.
    
    Parameters:
    iusId - a Integer object.
    
    Returns:
    a List object.
  - isHasFile
```
boolean isHasFile(Integer iusId)
```
    isHasFile.
    
    Parameters:
    iusId - a Integer object.
    
    Returns:
    a boolean.
  - getFiles
```
List<File> getFiles(Integer iusId,
                  String metaType)
```
    getFiles.
    
    Parameters:
    iusId - a Integer object.
    metaType - a String object.
    
    Returns:
    a List object.
  - isHasFile
```
boolean isHasFile(Integer iusId,
                String metaType)
```
    isHasFile.
    
    Parameters:
    iusId - a Integer object.
    metaType - a String object.
    
    Returns:
    a boolean.
  - setWithHasFile
```
SortedSet<IUS> setWithHasFile(SortedSet<IUS> list)
```
    setWithHasFile.
    
    Parameters:
    list - a SortedSet object.
    
    Returns:
    a SortedSet object.
  - listWithHasFile
```
SortedSet<IUS> listWithHasFile(SortedSet<IUS> list,
                             String metaType)
```
    listWithHasFile.
    
    Parameters:
    list - a SortedSet object.
    metaType - a String object.
    
    Returns:
    a SortedSet object.
  - updateDetached
```
IUS updateDetached(IUS ius)
```
    updateDetached.
    
    Parameters:
    ius - a IUS object.
    
    Returns:
    a IUS object.
  - updateDetached
```
IUS updateDetached(Registration registration,
                 IUS ius)
```
    updateDetached.
    
    Parameters:
    registration - a Registration object.
    ius - a IUS object.
    
    Returns:
    a IUS object.
  - findByOwnerID
```
List<IUS> findByOwnerID(Integer registrationId)
```
    findByOwnerID.
    
    Parameters:
    registrationId - a Integer object.
    
    Returns:
    a List object.
  - findByCriteria
```
List<IUS> findByCriteria(String criteria,
                       boolean isCaseSens)
```
    findByCriteria.
    
    Parameters:
    criteria - a String object.
    isCaseSens - a boolean.
    
    Returns:
    a List object.
  - findBelongsToStudy
```
List<IUS> findBelongsToStudy(Study study)
```
    findBelongsToStudy.
    
    Parameters:
    study - a Study object.
    
    Returns:
    a List object.
  - find
```
List<IUS> find(String sequencerRunName,
             Integer lane,
             String sampleName)
```
    find.
    
    Parameters:
    sequencerRunName - a String object.
    lane - a Integer object.
    sampleName - a String object.
    
    Returns:
    a List object.
  - list
```
List<IUS> list()
```
    list.
    
    Returns:
    a List object.

Interface IUSService

Field Summary

Method Summary

Field Detail

NAME

Method Detail

setIUSDAO

insert

insert

update

update

delete

findByID

findBySWAccession

getFiles

isHasFile

getFiles

isHasFile

setWithHasFile

listWithHasFile

updateDetached

updateDetached

findByOwnerID

findByCriteria

findBelongsToStudy

find

list