LaneService (SeqWare 1.1.2 API)

All Known Implementing Classes:

LaneServiceImpl
```
public interface LaneService
```
LaneService interface.

Version:

$Id: $Id

Author:

boconnor

Field Summary

Fields
Modifier and Type Field and Description

static String NAME
Constant NAME="laneService"

Fields
Modifier and Type	Field and Description
`static String`	`NAME` Constant `NAME="laneService"`

Method Summary

Methods
Modifier and Type	Method and Description
`void`	`delete(Lane lane, boolean deleteRealFiles)` delete.
`List<Lane>`	`findByCriteria(String criteria, boolean isCaseSens)` findByCriteria.
`Lane`	`findByID(Integer laneID)` findByID.
`Lane`	`findByName(String name)` findByName.
`List<Lane>`	`findByOwnerID(Integer registrationId)` findByOwnerID.
`Lane`	`findBySWAccession(Integer swAccession)` findBySWAccession.
`List<File>`	`getFiles(Integer laneId)` getFiles.
`List<File>`	`getFiles(Integer studyId, String metaType)` getFiles.
`boolean`	`hasNameBeenUsed(String oldName, String newName)` hasNameBeenUsed.
`void`	`insert(Lane lane)` insert.
`Integer`	`insert(Registration registration, Lane lane)` insert.
`Integer`	`insertLane(Registration registration, Sample sample, UploadSequence uploadSequence, FileType fileType)` insertLane.
`boolean`	`isHasFile(Integer laneId)` isHasFile.
`boolean`	`isHasFile(Integer studyId, String metaType)` isHasFile.
`List<Lane>`	`list()` list.
`List<Lane>`	`list(List<Integer> laneIds)` list.
`List<File>`	`listFile(Registration reqistration, String typeNode, List<File> list, String[] ids, String[] statuses)` listFile.
`SortedSet<Lane>`	`listWithHasFile(SortedSet<Lane> list, String metaType)` listWithHasFile.
`void`	`setLaneDAO(LaneDAO laneDAO)` setLaneDAO.
`SortedSet<Lane>`	`setWithHasFile(SortedSet<Lane> list)` setWithHasFile.
`void`	`update(Lane lane)` update.
`void`	`update(Registration registration, Lane lane)` update.
`Lane`	`updateDetached(Lane lane)` updateDetached.
`Lane`	`updateDetached(Registration registration, Lane lane)` updateDetached.

- Field Detail
  - NAME
```
static final String NAME
```
    Constant NAME="laneService"
    
    See Also:
    Constant Field Values
- Method Detail
  - setLaneDAO
```
void setLaneDAO(LaneDAO laneDAO)
```
    setLaneDAO.
    
    Parameters:
    laneDAO - a LaneDAO object.
  - insert
```
void insert(Lane lane)
```
    insert.
    
    Parameters:
    lane - a Lane object.
  - insert
```
Integer insert(Registration registration,
             Lane lane)
```
    insert.
    
    Parameters:
    registration - a Registration object.
    lane - a Lane object.
    
    Returns:
  - update
```
void update(Lane lane)
```
    update.
    
    Parameters:
    lane - a Lane object.
  - update
```
void update(Registration registration,
          Lane lane)
```
    update.
    
    Parameters:
    registration - a Registration object.
    lane - a Lane object.
  - delete
```
void delete(Lane lane,
          boolean deleteRealFiles)
```
    delete.
    
    Parameters:
    lane -
    deleteRealFiles -
  - findByName
```
Lane findByName(String name)
```
    findByName.
    
    Parameters:
    name - a String object.
    
    Returns:
    a Lane object.
  - findByID
```
Lane findByID(Integer laneID)
```
    findByID.
    
    Parameters:
    laneID - a Integer object.
    
    Returns:
    a Lane object.
  - findBySWAccession
```
Lane findBySWAccession(Integer swAccession)
```
    findBySWAccession.
    
    Parameters:
    swAccession - a Integer object.
    
    Returns:
    a Lane object.
  - hasNameBeenUsed
```
boolean hasNameBeenUsed(String oldName,
                      String newName)
```
    hasNameBeenUsed.
    
    Parameters:
    oldName - a String object.
    newName - a String object.
    
    Returns:
    a boolean.
  - insertLane
```
Integer insertLane(Registration registration,
                 Sample sample,
                 UploadSequence uploadSequence,
                 FileType fileType)
                   throws Exception
```
    insertLane.
    
    Parameters:
    registration - a Registration object.
    sample - a Sample object.
    uploadSequence - a UploadSequence object.
    fileType - a FileType object.
    
    Returns:
    a Integer object.
    
    Throws:
    
    Exception - if any.
  - listFile
```
List<File> listFile(Registration reqistration,
                  String typeNode,
                  List<File> list,
                  String[] ids,
                  String[] statuses)
```
    listFile.
    
    Parameters:
    reqistration - a Registration object.
    typeNode - a String object.
    list - a List object.
    ids - an array of String objects.
    statuses - an array of String objects.
    
    Returns:
    a List object.
  - getFiles
```
List<File> getFiles(Integer laneId)
```
    getFiles.
    
    Parameters:
    laneId - a Integer object.
    
    Returns:
    a List object.
  - isHasFile
```
boolean isHasFile(Integer laneId)
```
    isHasFile.
    
    Parameters:
    laneId - a Integer object.
    
    Returns:
    a boolean.
  - getFiles
```
List<File> getFiles(Integer studyId,
                  String metaType)
```
    getFiles.
    
    Parameters:
    studyId - a Integer object.
    metaType - a String object.
    
    Returns:
    a List object.
  - isHasFile
```
boolean isHasFile(Integer studyId,
                String metaType)
```
    isHasFile.
    
    Parameters:
    studyId - a Integer object.
    metaType - a String object.
    
    Returns:
    a boolean.
  - setWithHasFile
```
SortedSet<Lane> setWithHasFile(SortedSet<Lane> list)
```
    setWithHasFile.
    
    Parameters:
    list - a SortedSet object.
    
    Returns:
    a SortedSet object.
  - listWithHasFile
```
SortedSet<Lane> listWithHasFile(SortedSet<Lane> list,
                              String metaType)
```
    listWithHasFile.
    
    Parameters:
    list - a SortedSet object.
    metaType - a String object.
    
    Returns:
    a SortedSet object.
  - list
```
List<Lane> list(List<Integer> laneIds)
```
    list.
    
    Parameters:
    laneIds - a List object.
    
    Returns:
    a List object.
  - updateDetached
```
Lane updateDetached(Lane lane)
```
    updateDetached.
    
    Parameters:
    lane - a Lane object.
    
    Returns:
    a Lane object.
  - updateDetached
```
Lane updateDetached(Registration registration,
                  Lane lane)
```
    updateDetached.
    
    Parameters:
    registration - a Registration object.
    lane - a Lane object.
    
    Returns:
    a Lane object.
  - findByOwnerID
```
List<Lane> findByOwnerID(Integer registrationId)
```
    findByOwnerID.
    
    Parameters:
    registrationId - a Integer object.
    
    Returns:
    a List object.
  - findByCriteria
```
List<Lane> findByCriteria(String criteria,
                        boolean isCaseSens)
```
    findByCriteria.
    
    Parameters:
    criteria - a String object.
    isCaseSens - a boolean.
    
    Returns:
    a List object.
  - list
```
List<Lane> list()
```
    list.
    
    Returns:
    a List object.

Interface LaneService

Field Summary

Method Summary

Field Detail

NAME

Method Detail

setLaneDAO

insert

insert

update

update

delete

findByName

findByID

findBySWAccession

hasNameBeenUsed

insertLane

listFile

getFiles

isHasFile

getFiles

isHasFile

setWithHasFile

listWithHasFile

list

updateDetached

updateDetached

findByOwnerID

findByCriteria

list