LaneServiceImpl (SeqWare 1.1.2 API)

java.lang.Object
- net.sourceforge.seqware.common.business.impl.LaneServiceImpl

All Implemented Interfaces:

LaneService
```
public class LaneServiceImpl
extends Object
implements LaneService
```
LaneServiceImpl class.

Version:

$Id: $Id

Author:

boconnor

Field Summary
- Fields inherited from interface net.sourceforge.seqware.common.business.LaneService
  NAME

Constructor Summary

Constructors
Constructor and Description

LaneServiceImpl()
Constructor for LaneServiceImpl.

Constructors
Constructor and Description
`LaneServiceImpl()` Constructor for LaneServiceImpl.

Method Summary

Methods
Modifier and Type	Method and Description
`void`	`delete(Lane lane, boolean deleteRealFiles)` delete.
`List<Lane>`	`findByCriteria(String criteria, boolean isCaseSens)` findByCriteria.
`Lane`	`findByID(Integer laneID)` findByID.
`Lane`	`findByName(String name)` findByName.
`List<Lane>`	`findByOwnerID(Integer registrationId)` findByOwnerID.
`Lane`	`findBySWAccession(Integer swAccession)` findBySWAccession.
`List<File>`	`getFiles(Integer laneId)` getFiles.
`List<File>`	`getFiles(Integer studyId, String metaType)` getFiles.
`boolean`	`hasNameBeenUsed(String oldName, String newName)` hasNameBeenUsed.
`void`	`insert(Lane lane)` insert.
`Integer`	`insert(Registration registration, Lane lane)` insert.
`Integer`	`insertLane(Registration registration, Sample sample, UploadSequence uploadSeqence, FileType fileType)` insertLane.
`boolean`	`isHasFile(Integer laneId)` isHasFile.
`boolean`	`isHasFile(Integer studyId, String metaType)` isHasFile.
`List<Lane>`	`list()` list.
`List<Lane>`	`list(List<Integer> laneIds)` list.
`List<File>`	`listFile(Registration reqistration, String typeNode, List<File> list, String[] ids, String[] statuses)` listFile.
`SortedSet<Lane>`	`listWithHasFile(SortedSet<Lane> list, String metaType)` listWithHasFile.
`void`	`setFileDAO(FileDAO fileDAO)` Sets a private member variable with an instance of an implementation of FileDAO.
`void`	`setIUSDAO(IUSDAO IUSDAO)` Sets a private member variable with an instance of an implementation of IUSDAO.
`void`	`setLaneDAO(LaneDAO laneDAO)` setLaneDAO.
`void`	`setProcessingDAO(ProcessingDAO processingDAO)` Sets a private member variable with an instance of an implementation of ProcessingDAO.
`SortedSet<Lane>`	`setWithHasFile(SortedSet<Lane> list)` setWithHasFile.
`void`	`update(Lane lane)` update.
`void`	`update(Registration registration, Lane lane)` update.
`Lane`	`updateDetached(Lane lane)` updateDetached.
`Lane`	`updateDetached(Registration registration, Lane lane)` updateDetached.
`Integer`	`updateLane(Sample sample, org.springframework.web.multipart.MultipartFile fileOne, org.springframework.web.multipart.MultipartFile fileTwo, String typeFile, String folderStore, Registration registration)` updateLane.

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Constructor Detail
  - LaneServiceImpl
```
public LaneServiceImpl()
```
    Constructor for LaneServiceImpl.
- Method Detail
  - setLaneDAO
```
public void setLaneDAO(LaneDAO laneDAO)
```
    setLaneDAO.
    Sets a private member variable with an instance of an implementation of LaneDAO. This method is called by the Spring framework at run time.
    
    Specified by:
    
    setLaneDAO in interface LaneService
    
    Parameters:
    laneDAO - a LaneDAO object.
    See Also:
    LaneDAO
  - setProcessingDAO
```
public void setProcessingDAO(ProcessingDAO processingDAO)
```
    Sets a private member variable with an instance of an implementation of ProcessingDAO. This method is called by the Spring framework at run time.
    
    Parameters:
    processingDAO - implementation of ProcessingDAO
    See Also:
    ProcessingDAO
  - setFileDAO
```
public void setFileDAO(FileDAO fileDAO)
```
    Sets a private member variable with an instance of an implementation of FileDAO. This method is called by the Spring framework at run time.
    
    Parameters:
    fileDAO - implementation of FileDAO
    See Also:
    fileDAO
  - setIUSDAO
```
public void setIUSDAO(IUSDAO IUSDAO)
```
    Sets a private member variable with an instance of an implementation of IUSDAO. This method is called by the Spring framework at run time.
    
    Parameters:
    IUSDAO - a IUSDAO object.
    See Also:
    iusDAO
  - getFiles
```
public List<File> getFiles(Integer laneId)
```
    getFiles.
    
    Specified by:
    
    getFiles in interface LaneService
    
    Parameters:
    laneId - a Integer object.
    
    Returns:
    a List object.
  - getFiles
```
public List<File> getFiles(Integer studyId,
                  String metaType)
```
    getFiles.
    
    Specified by:
    
    getFiles in interface LaneService
    
    Parameters:
    studyId - a Integer object.
    metaType - a String object.
    
    Returns:
    a List object.
  - isHasFile
```
public boolean isHasFile(Integer studyId,
                String metaType)
```
    isHasFile.
    
    Specified by:
    
    isHasFile in interface LaneService
    
    Parameters:
    studyId - a Integer object.
    metaType - a String object.
    
    Returns:
    a boolean.
  - isHasFile
```
public boolean isHasFile(Integer laneId)
```
    isHasFile.
    
    Specified by:
    
    isHasFile in interface LaneService
    
    Parameters:
    laneId - a Integer object.
    
    Returns:
    a boolean.
  - setWithHasFile
```
public SortedSet<Lane> setWithHasFile(SortedSet<Lane> list)
```
    setWithHasFile.
    
    Specified by:
    
    setWithHasFile in interface LaneService
    
    Parameters:
    list - a SortedSet object.
    
    Returns:
    a SortedSet object.
  - listWithHasFile
```
public SortedSet<Lane> listWithHasFile(SortedSet<Lane> list,
                              String metaType)
```
    listWithHasFile.
    
    Specified by:
    
    listWithHasFile in interface LaneService
    
    Parameters:
    list - a SortedSet object.
    metaType - a String object.
    
    Returns:
    a SortedSet object.
  - insertLane
```
public Integer insertLane(Registration registration,
                 Sample sample,
                 UploadSequence uploadSeqence,
                 FileType fileType)
                   throws Exception
```
    insertLane.
    
    Specified by:
    
    insertLane in interface LaneService
    
    Parameters:
    uploadSeqence -
    registration - a Registration object.
    sample - a Sample object.
    fileType - a FileType object.
    
    Returns:
    a Integer object.
    
    Throws:
    
    Exception - if any.
  - updateLane
```
public Integer updateLane(Sample sample,
                 org.springframework.web.multipart.MultipartFile fileOne,
                 org.springframework.web.multipart.MultipartFile fileTwo,
                 String typeFile,
                 String folderStore,
                 Registration registration)
                   throws Exception
```
    updateLane.
    
    Parameters:
    sample - a Sample object.
    fileOne - a MultipartFile object.
    fileTwo - a MultipartFile object.
    typeFile - a String object.
    folderStore - a String object.
    registration - a Registration object.
    
    Returns:
    a Integer object.
    
    Throws:
    
    Exception - if any.
  - list
```
public List<Lane> list(List<Integer> laneIds)
```
    list.
    
    Specified by:
    
    list in interface LaneService
    
    Parameters:
    laneIds - a List object.
    
    Returns:
    a List object.
  - insert
```
public void insert(Lane lane)
```
    insert.
    Inserts an instance of Lane into the database.
    
    Specified by:
    
    insert in interface LaneService
    
    Parameters:
    lane - a Lane object.
  - update
```
public void update(Lane lane)
```
    update.
    Updates an instance of Lane in the database.
    
    Specified by:
    
    update in interface LaneService
    
    Parameters:
    lane - a Lane object.
  - delete
```
public void delete(Lane lane,
          boolean deleteRealFiles)
```
    delete.
    Deletes an instance of Lane in the database.
    
    Specified by:
    
    delete in interface LaneService
    
    Parameters:
    lane -
    deleteRealFiles -
  - findByName
```
public Lane findByName(String name)
```
    findByName.
    Finds an instance of Lane in the database by the Lane emailAddress, and copies the Lane properties to an instance of Lane.
    
    Specified by:
    
    findByName in interface LaneService
    
    Parameters:
    name - a String object.
    
    Returns:
    a Lane object.
  - findByID
```
public Lane findByID(Integer laneID)
```
    findByID.
    
    Specified by:
    
    findByID in interface LaneService
    
    Parameters:
    laneID - a Integer object.
    
    Returns:
    a Lane object.
  - findBySWAccession
```
public Lane findBySWAccession(Integer swAccession)
```
    findBySWAccession.
    
    Specified by:
    
    findBySWAccession in interface LaneService
    
    Parameters:
    swAccession - a Integer object.
    
    Returns:
    a Lane object.
  - findByOwnerID
```
public List<Lane> findByOwnerID(Integer registrationId)
```
    findByOwnerID.
    
    Specified by:
    
    findByOwnerID in interface LaneService
    
    Parameters:
    registrationId - a Integer object.
    
    Returns:
    a List object.
  - hasNameBeenUsed
```
public boolean hasNameBeenUsed(String oldName,
                      String newName)
```
    hasNameBeenUsed.
    Determines if an email address has already been used.
    
    Specified by:
    
    hasNameBeenUsed in interface LaneService
    
    Parameters:
    oldName - a String object.
    newName - a String object.
    
    Returns:
    a boolean.
  - listFile
```
public List<File> listFile(Registration reqistration,
                  String typeNode,
                  List<File> list,
                  String[] ids,
                  String[] statuses)
```
    listFile.
    
    Specified by:
    
    listFile in interface LaneService
    
    Parameters:
    reqistration - a Registration object.
    typeNode - a String object.
    list - a List object.
    ids - an array of String objects.
    statuses - an array of String objects.
    
    Returns:
    a List object.
  - findByCriteria
```
public List<Lane> findByCriteria(String criteria,
                        boolean isCaseSens)
```
    findByCriteria.
    
    Specified by:
    
    findByCriteria in interface LaneService
    
    Parameters:
    criteria - a String object.
    isCaseSens - a boolean.
    
    Returns:
    a List object.
  - updateDetached
```
public Lane updateDetached(Lane lane)
```
    updateDetached.
    
    Specified by:
    
    updateDetached in interface LaneService
    
    Parameters:
    lane - a Lane object.
    
    Returns:
    a Lane object.
  - list
```
public List<Lane> list()
```
    list.
    
    Specified by:
    
    list in interface LaneService
    
    Returns:
    a List object.
  - update
```
public void update(Registration registration,
          Lane lane)
```
    update.
    
    Specified by:
    
    update in interface LaneService
    
    Parameters:
    registration - a Registration object.
    lane - a Lane object.
  - insert
```
public Integer insert(Registration registration,
             Lane lane)
```
    insert.
    
    Specified by:
    
    insert in interface LaneService
    
    Parameters:
    registration - a Registration object.
    lane - a Lane object.
    
    Returns:
  - updateDetached
```
public Lane updateDetached(Registration registration,
                  Lane lane)
```
    updateDetached.
    
    Specified by:
    
    updateDetached in interface LaneService
    
    Parameters:
    registration - a Registration object.
    lane - a Lane object.
    
    Returns:
    a Lane object.

Class LaneServiceImpl

Field Summary

Fields inherited from interface net.sourceforge.seqware.common.business.LaneService

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Constructor Detail

LaneServiceImpl

Method Detail

setLaneDAO

setProcessingDAO

setFileDAO

setIUSDAO

getFiles

getFiles

isHasFile

isHasFile

setWithHasFile

listWithHasFile

insertLane

updateLane

list

insert

update

delete

findByName

findByID

findBySWAccession

findByOwnerID

hasNameBeenUsed

listFile

findByCriteria

updateDetached

list

update

insert

updateDetached