IUSDAO (SeqWare 1.1.2 API)

All Known Implementing Classes:

IUSDAOHibernate
```
public interface IUSDAO
```
IUSDAO interface.

Version:

$Id: $Id

Author:

boconnor

Method Summary

Methods
Modifier and Type	Method and Description
`void`	`delete(IUS obj)` delete.
`List<IUS>`	`find(String sequencerRunName, Integer lane, String sampleName)` find.
`List<IUS>`	`findBelongsToStudy(Study study)` findBelongsToStudy.
`List<IUS>`	`findByCriteria(String criteria, boolean isCaseSens)` findByCriteria.
`IUS`	`findByID(Integer id)` findByID.
`List<IUS>`	`findByOwnerID(Integer registrationId)` findByOwnerID.
`IUS`	`findBySWAccession(Integer swAccession)` findBySWAccession.
`List<File>`	`getFiles(Integer iusId)` getFiles.
`List<File>`	`getFiles(Integer iusId, String metaType)` getFiles.
`Integer`	`insert(IUS obj)` insert.
`Integer`	`insert(Registration registration, IUS obj)` insert.
`boolean`	`isHasFile(Integer iusId)` isHasFile.
`boolean`	`isHasFile(Integer iusId, String metaType)` isHasFile.
`List<IUS>`	`list()` list.
`void`	`update(IUS obj)` update.
`void`	`update(Registration registration, IUS ius)` update.
`IUS`	`updateDetached(IUS ius)` updateDetached.
`IUS`	`updateDetached(Registration registration, IUS ius)` updateDetached.

- Method Detail
  - insert
```
Integer insert(IUS obj)
```
    insert.
    
    Parameters:
    obj - a IUS object.
    
    Returns:
  - insert
```
Integer insert(Registration registration,
             IUS obj)
```
    insert.
    
    Parameters:
    registration - a Registration object.
    obj - a IUS object.
    
    Returns:
  - update
```
void update(IUS obj)
```
    update.
    
    Parameters:
    obj - a IUS object.
  - update
```
void update(Registration registration,
          IUS ius)
```
    update.
    
    Parameters:
    registration - a Registration object.
    ius - a IUS object.
  - delete
```
void delete(IUS obj)
```
    delete.
    
    Parameters:
    obj - a IUS object.
  - findByID
```
IUS findByID(Integer id)
```
    findByID.
    
    Parameters:
    id - a Integer object.
    
    Returns:
    a IUS object.
  - getFiles
```
List<File> getFiles(Integer iusId)
```
    getFiles.
    
    Parameters:
    iusId - a Integer object.
    
    Returns:
    a List object.
  - isHasFile
```
boolean isHasFile(Integer iusId)
```
    isHasFile.
    
    Parameters:
    iusId - a Integer object.
    
    Returns:
    a boolean.
  - getFiles
```
List<File> getFiles(Integer iusId,
                  String metaType)
```
    getFiles.
    
    Parameters:
    iusId - a Integer object.
    metaType - a String object.
    
    Returns:
    a List object.
  - isHasFile
```
boolean isHasFile(Integer iusId,
                String metaType)
```
    isHasFile.
    
    Parameters:
    iusId - a Integer object.
    metaType - a String object.
    
    Returns:
    a boolean.
  - findBySWAccession
```
IUS findBySWAccession(Integer swAccession)
```
    findBySWAccession.
    
    Parameters:
    swAccession - a Integer object.
    
    Returns:
    a IUS object.
  - updateDetached
```
IUS updateDetached(IUS ius)
```
    updateDetached.
    
    Parameters:
    ius - a IUS object.
    
    Returns:
    a IUS object.
  - updateDetached
```
IUS updateDetached(Registration registration,
                 IUS ius)
```
    updateDetached.
    
    Parameters:
    registration - a Registration object.
    ius - a IUS object.
    
    Returns:
    a IUS object.
  - findByOwnerID
```
List<IUS> findByOwnerID(Integer registrationId)
```
    findByOwnerID.
    
    Parameters:
    registrationId - a Integer object.
    
    Returns:
    a List object.
  - findByCriteria
```
List<IUS> findByCriteria(String criteria,
                       boolean isCaseSens)
```
    findByCriteria.
    
    Parameters:
    criteria - a String object.
    isCaseSens - a boolean.
    
    Returns:
    a List object.
  - findBelongsToStudy
```
List<IUS> findBelongsToStudy(Study study)
```
    findBelongsToStudy.
    
    Parameters:
    study - a Study object.
    
    Returns:
    a List object.
  - find
```
List<IUS> find(String sequencerRunName,
             Integer lane,
             String sampleName)
```
    find.
    
    Parameters:
    sequencerRunName - a String object.
    lane - a Integer object.
    sampleName - a String object.
    
    Returns:
    a List object.
  - list
```
List<IUS> list()
```
    list.
    
    Returns:
    a List object.

Interface IUSDAO

Method Summary

Method Detail

insert

insert

update

update

delete

findByID

getFiles

isHasFile

getFiles

isHasFile

findBySWAccession

updateDetached

updateDetached

findByOwnerID

findByCriteria

findBelongsToStudy

find

list