ExperimentService (SeqWare 1.1.2 API)

All Known Implementing Classes:

ExperimentServiceImpl
```
public interface ExperimentService
```
ExperimentService interface.

Version:

$Id: $Id

Author:

boconnor

Field Summary

Fields
Modifier and Type Field and Description

static String NAME
Constant NAME="ExperimentService"

Fields
Modifier and Type	Field and Description
`static String`	`NAME` Constant `NAME="ExperimentService"`

Method Summary

Methods
Modifier and Type	Method and Description
`void`	`delete(Experiment experiment, boolean deleteRealFiles)` delete.
`List<Experiment>`	`findByCriteria(String criteria, boolean isCaseSens)` findByCriteria.
`Experiment`	`findByID(Integer expID)` findByID.
`List<Experiment>`	`findByOwnerID(Integer registrationID)` findByOwnerID.
`Experiment`	`findBySWAccession(Integer swAccession)` findBySWAccession.
`Experiment`	`findByTitle(String name)` findByTitle.
`List<File>`	`getFiles(Integer expId)` getFiles.
`List<File>`	`getFiles(Integer studyId, String metaType)` getFiles.
`boolean`	`hasTitleBeenUsed(String oldName, String newName)` hasTitleBeenUsed.
`Integer`	`insert(Experiment experiment)` insert.
`Integer`	`insert(Registration registration, Experiment experiment)` insert.
`boolean`	`isHasFile(Integer expId)` isHasFile.
`boolean`	`isHasFile(Integer studyId, String metaType)` isHasFile.
`List<Experiment>`	`list()` list.
`List<Experiment>`	`list(Registration registration)` list.
`List<Experiment>`	`list(Study study)` list.
`SortedSet<Experiment>`	`listWithHasFile(SortedSet<Experiment> list, String metaType)` listWithHasFile.
`void`	`merge(Experiment experiment)` merge.
`void`	`setExperimentDAO(ExperimentDAO experimentDAO)` setExperimentDAO.
`SortedSet<Experiment>`	`setWithHasFile(SortedSet<Experiment> list)` setWithHasFile.
`void`	`update(Experiment experiment)` update.
`void`	`update(Registration registration, Experiment experiment)` update.
`Experiment`	`updateDetached(Experiment experiment)` updateDetached.
`Experiment`	`updateDetached(Registration registration, Experiment experiment)` updateDetached.

- Field Detail
  - NAME
```
static final String NAME
```
    Constant NAME="ExperimentService"
    
    See Also:
    Constant Field Values
- Method Detail
  - setExperimentDAO
```
void setExperimentDAO(ExperimentDAO experimentDAO)
```
    setExperimentDAO.
    
    Parameters:
    experimentDAO - a ExperimentDAO object.
  - insert
```
Integer insert(Experiment experiment)
```
    insert.
    
    Parameters:
    experiment - a Experiment object.
    
    Returns:
    a Integer object.
  - insert
```
Integer insert(Registration registration,
             Experiment experiment)
```
    insert.
    
    Parameters:
    registration - a Registration object.
    experiment - a Experiment object.
    
    Returns:
    a Integer object.
  - update
```
void update(Experiment experiment)
```
    update.
    
    Parameters:
    experiment - a Experiment object.
  - update
```
void update(Registration registration,
          Experiment experiment)
```
    update.
    
    Parameters:
    registration - a Registration object.
    experiment - a Experiment object.
  - delete
```
void delete(Experiment experiment,
          boolean deleteRealFiles)
```
    delete.
    
    Parameters:
    experiment -
    deleteRealFiles -
  - list
```
List<Experiment> list()
```
    list.
    
    Returns:
    a List object.
  - list
```
List<Experiment> list(Registration registration)
```
    list.
    
    Parameters:
    registration - a Registration object.
    
    Returns:
    a List object.
  - list
```
List<Experiment> list(Study study)
```
    list.
    
    Parameters:
    study - a Study object.
    
    Returns:
    a List object.
  - findByTitle
```
Experiment findByTitle(String name)
```
    findByTitle.
    
    Parameters:
    name - a String object.
    
    Returns:
    a Experiment object.
  - findByID
```
Experiment findByID(Integer expID)
```
    findByID.
    
    Parameters:
    expID - a Integer object.
    
    Returns:
    a Experiment object.
  - findBySWAccession
```
Experiment findBySWAccession(Integer swAccession)
```
    findBySWAccession.
    
    Parameters:
    swAccession - a Integer object.
    
    Returns:
    a Experiment object.
  - hasTitleBeenUsed
```
boolean hasTitleBeenUsed(String oldName,
                       String newName)
```
    hasTitleBeenUsed.
    
    Parameters:
    oldName - a String object.
    newName - a String object.
    
    Returns:
    a boolean.
  - getFiles
```
List<File> getFiles(Integer expId)
```
    getFiles.
    
    Parameters:
    expId - a Integer object.
    
    Returns:
    a List object.
  - isHasFile
```
boolean isHasFile(Integer expId)
```
    isHasFile.
    
    Parameters:
    expId - a Integer object.
    
    Returns:
    a boolean.
  - getFiles
```
List<File> getFiles(Integer studyId,
                  String metaType)
```
    getFiles.
    
    Parameters:
    studyId - a Integer object.
    metaType - a String object.
    
    Returns:
    a List object.
  - isHasFile
```
boolean isHasFile(Integer studyId,
                String metaType)
```
    isHasFile.
    
    Parameters:
    studyId - a Integer object.
    metaType - a String object.
    
    Returns:
    a boolean.
  - setWithHasFile
```
SortedSet<Experiment> setWithHasFile(SortedSet<Experiment> list)
```
    setWithHasFile.
    
    Parameters:
    list - a SortedSet object.
    
    Returns:
    a SortedSet object.
  - listWithHasFile
```
SortedSet<Experiment> listWithHasFile(SortedSet<Experiment> list,
                                    String metaType)
```
    listWithHasFile.
    
    Parameters:
    list - a SortedSet object.
    metaType - a String object.
    
    Returns:
    a SortedSet object.
  - updateDetached
```
Experiment updateDetached(Experiment experiment)
```
    updateDetached.
    
    Parameters:
    experiment - a Experiment object.
    
    Returns:
    a Experiment object.
  - updateDetached
```
Experiment updateDetached(Registration registration,
                        Experiment experiment)
```
    updateDetached.
    
    Parameters:
    registration - a Registration object.
    experiment - a Experiment object.
    
    Returns:
    a Experiment object.
  - findByOwnerID
```
List<Experiment> findByOwnerID(Integer registrationID)
```
    findByOwnerID.
    
    Parameters:
    registrationID - a Integer object.
    
    Returns:
    a List object.
  - findByCriteria
```
List<Experiment> findByCriteria(String criteria,
                              boolean isCaseSens)
```
    findByCriteria.
    
    Parameters:
    criteria - a String object.
    isCaseSens - a boolean.
    
    Returns:
    a List object.
  - merge
```
void merge(Experiment experiment)
```
    merge.
    
    Parameters:
    experiment - a Experiment object.

Interface ExperimentService

Field Summary

Method Summary

Field Detail

NAME

Method Detail

setExperimentDAO

insert

insert

update

update

delete

list

list

list

findByTitle

findByID

findBySWAccession

hasTitleBeenUsed

getFiles

isHasFile

getFiles

isHasFile

setWithHasFile

listWithHasFile

updateDetached

updateDetached

findByOwnerID

findByCriteria

merge