ExperimentDAO (SeqWare 1.1.2 API)

All Known Implementing Classes:

ExperimentDAOHibernate
```
public interface ExperimentDAO
```
ExperimentDAO interface.

Version:

$Id: $Id

Author:

boconnor

Method Summary

Methods
Modifier and Type	Method and Description
`void`	`delete(Experiment sequencerRun)` delete.
`List<Experiment>`	`findByCriteria(String criteria, boolean isCaseSens)` findByCriteria.
`Experiment`	`findByID(Integer studyID)` findByID.
`List<Experiment>`	`findByOwnerID(Integer registrationID)` findByOwnerID.
`Experiment`	`findBySWAccession(Integer swAccession)` findBySWAccession.
`Experiment`	`findByTitle(String title)` findByTitle.
`List<File>`	`getFiles(Integer experimentId)` getFiles.
`List<File>`	`getFiles(Integer expId, String metaType)` getFiles.
`Integer`	`insert(Experiment sequencerRun)` insert.
`Integer`	`insert(Registration registration, Experiment sequencerRun)` insert.
`boolean`	`isHasFile(Integer experimentId)` isHasFile.
`boolean`	`isHasFile(Integer expId, String metaType)` isHasFile.
`List<Experiment>`	`list()` list.
`List<Experiment>`	`list(Registration registration)` list.
`List<Experiment>`	`list(Study study)` list.
`void`	`merge(Experiment experiment)` merge.
`void`	`update(Experiment sequencerRun)` update.
`void`	`update(Registration registration, Experiment experiment)` update.
`Experiment`	`updateDetached(Experiment experiment)` updateDetached.
`Experiment`	`updateDetached(Registration registration, Experiment experiment)` updateDetached.

- Method Detail
  - insert
```
Integer insert(Experiment sequencerRun)
```
    insert.
    
    Parameters:
    sequencerRun - a Experiment object.
    
    Returns:
    a Integer object.
  - insert
```
Integer insert(Registration registration,
             Experiment sequencerRun)
```
    insert.
    
    Parameters:
    registration - a Registration object.
    sequencerRun - a Experiment object.
    
    Returns:
    a Integer object.
  - update
```
void update(Experiment sequencerRun)
```
    update.
    
    Parameters:
    sequencerRun - a Experiment object.
  - update
```
void update(Registration registration,
          Experiment experiment)
```
    update.
    
    Parameters:
    registration - a Registration object.
    experiment - a Experiment object.
  - delete
```
void delete(Experiment sequencerRun)
```
    delete.
    
    Parameters:
    sequencerRun - a Experiment object.
  - list
```
List<Experiment> list()
```
    list.
    
    Returns:
    a List object.
  - list
```
List<Experiment> list(Registration registration)
```
    list.
    
    Parameters:
    registration - a Registration object.
    
    Returns:
    a List object.
  - list
```
List<Experiment> list(Study study)
```
    list.
    
    Parameters:
    study - a Study object.
    
    Returns:
    a List object.
  - findByTitle
```
Experiment findByTitle(String title)
```
    findByTitle.
    
    Parameters:
    title - a String object.
    
    Returns:
    a Experiment object.
  - findByID
```
Experiment findByID(Integer studyID)
```
    findByID.
    
    Parameters:
    studyID - a Integer object.
    
    Returns:
    a Experiment object.
  - findBySWAccession
```
Experiment findBySWAccession(Integer swAccession)
```
    findBySWAccession.
    
    Parameters:
    swAccession - a Integer object.
    
    Returns:
    a Experiment object.
  - getFiles
```
List<File> getFiles(Integer experimentId)
```
    getFiles.
    
    Parameters:
    experimentId - a Integer object.
    
    Returns:
    a List object.
  - isHasFile
```
boolean isHasFile(Integer experimentId)
```
    isHasFile.
    
    Parameters:
    experimentId - a Integer object.
    
    Returns:
    a boolean.
  - getFiles
```
List<File> getFiles(Integer expId,
                  String metaType)
```
    getFiles.
    
    Parameters:
    expId - a Integer object.
    metaType - a String object.
    
    Returns:
    a List object.
  - isHasFile
```
boolean isHasFile(Integer expId,
                String metaType)
```
    isHasFile.
    
    Parameters:
    expId - a Integer object.
    metaType - a String object.
    
    Returns:
    a boolean.
  - updateDetached
```
Experiment updateDetached(Experiment experiment)
```
    updateDetached.
    
    Parameters:
    experiment - a Experiment object.
    
    Returns:
    a Experiment object.
  - updateDetached
```
Experiment updateDetached(Registration registration,
                        Experiment experiment)
```
    updateDetached.
    
    Parameters:
    registration - a Registration object.
    experiment - a Experiment object.
    
    Returns:
    a Experiment object.
  - findByOwnerID
```
List<Experiment> findByOwnerID(Integer registrationID)
```
    findByOwnerID.
    
    Parameters:
    registrationID - a Integer object.
    
    Returns:
    a List object.
  - findByCriteria
```
List<Experiment> findByCriteria(String criteria,
                              boolean isCaseSens)
```
    findByCriteria.
    
    Parameters:
    criteria - a String object.
    isCaseSens - a boolean.
    
    Returns:
    a List object.
  - merge
```
void merge(Experiment experiment)
```
    merge.
    
    Parameters:
    experiment - a Experiment object.

Interface ExperimentDAO

Method Summary

Method Detail

insert

insert

update

update

delete

list

list

list

findByTitle

findByID

findBySWAccession

getFiles

isHasFile

getFiles

isHasFile

updateDetached

updateDetached

findByOwnerID

findByCriteria

merge