Experiment (SeqWare 1.1.2 API)

java.lang.Object
- net.sourceforge.seqware.common.security.PermissionsAware
- - net.sourceforge.seqware.common.model.Experiment

All Implemented Interfaces:: Serializable, Comparable<Experiment>, Annotatable<ExperimentAttribute>, FirstTierModel, ParentAccessionModel

public class Experiment
extends PermissionsAware
implements Serializable, Comparable<Experiment>, ParentAccessionModel, Annotatable<ExperimentAttribute>, FirstTierModel

See Also:: Serialized Form

Constructor Summary

Constructors
Constructor and Description

Experiment()
Constructor for Experiment.

Constructors
Constructor and Description
`Experiment()` Constructor for Experiment.

Method Summary

Methods
Modifier and Type	Method and Description
`int`	`compareTo(Experiment that)`
`boolean`	`equals(Object other)`
`String`	`getAccession()` Getter for the field `accession`.
`String`	`getAlias()` Getter for the field `alias`.
`Set<ExperimentAttribute>`	`getAnnotations()` Get the annotations for this model
`String`	`getBaseCaller()` Getter for the field `baseCaller`.
`String`	`getCenterName()` Getter for the field `centerName`.
`Date`	`getCreateTimestamp()` Getter for the field `createTimestamp`.
`String`	`getDescription()` Getter for the field `description`.
`Long`	`getExpectedNumberReads()` Getter for the field `expectedNumberReads`.
`Integer`	`getExpectedNumberRuns()` Getter for the field `expectedNumberRuns`.
`Long`	`getExpectedNumberSpots()` Getter for the field `expectedNumberSpots`.
`Set<ExperimentAttribute>`	`getExperimentAttributes()` Getter for the field `experimentAttributes`.
`Integer`	`getExperimentId()` Getter for the field `experimentId`.
`ExperimentLibraryDesign`	`getExperimentLibraryDesign()` Getter for the field `experimentLibraryDesign`.
`ExperimentSpotDesign`	`getExperimentSpotDesign()` Getter for the field `experimentSpotDesign`.
`String`	`getExpLibDesignDesc()` Getter for the field `expLibDesignDesc`.
`String`	`getExpLibDesignName()` Getter for the field `expLibDesignName`.
`String`	`getExpLibDesignProtocol()` Getter for the field `expLibDesignProtocol`.
`Integer`	`getExpLibDesignSelection()` Getter for the field `expLibDesignSelection`.
`Integer`	`getExpLibDesignSource()` Getter for the field `expLibDesignSource`.
`Integer`	`getExpLibDesignStrategy()` Getter for the field `expLibDesignStrategy`.
`String`	`getExpSpotDesignAdapterSpec()` Getter for the field `expSpotDesignAdapterSpec`.
`Integer`	`getExpSpotDesignReadsPerSpot()` Getter for the field `expSpotDesignReadsPerSpot`.
`String`	`getExpSpotDesignTagSpec()` Getter for the field `expSpotDesignTagSpec`.
`Boolean`	`getIsHasFile()` Getter for the field `isHasFile`.
`Boolean`	`getIsSelected()` Getter for the field `isSelected`.
`String`	`getJsonEscapeDescription()` getJsonEscapeDescription.
`String`	`getJsonEscapeDescription200()` getJsonEscapeDescription200.
`String`	`getJsonEscapeName()` getJsonEscapeName.
`String`	`getJsonEscapeTitle()` getJsonEscapeTitle.
`String`	`getName()` Getter for the field `name`.
`Registration`	`getOwner()` Getter for the field `owner`.
`Platform`	`getPlatform()` Getter for the field `platform`.
`Integer`	`getPlatformInt()` Getter for the field `platformInt`.
`Set<Processing>`	`getProcessings()` Getter for the field `processings`.
`Integer`	`getQualityMultiplier()` Getter for the field `qualityMultiplier`.
`Integer`	`getQualityNumberOfLevels()` Getter for the field `qualityNumberOfLevels`.
`String`	`getQualityScorer()` Getter for the field `qualityScorer`.
`String`	`getQualityType()` Getter for the field `qualityType`.
`SortedSet<Sample>`	`getSamples()` Getter for the field `samples`.
`String`	`getSequenceSpace()` Getter for the field `sequenceSpace`.
`static long`	`getSerialVersionUID()` Getter for the field `serialVersionUID`.
`String`	`getSpotDesignReadSpec()` Getter for the field `spotDesignReadSpec`.
`String`	`getStatus()` Getter for the field `status`.
`String`	`getStrExpectedNumberReads()` Getter for the field `strExpectedNumberReads`.
`String`	`getStrExpectedNumberRuns()` Getter for the field `strExpectedNumberRuns`.
`Study`	`getStudy()` Getter for the field `study`.
`Integer`	`getSwAccession()` Getter for the field `swAccession`.
`String`	`getTitle()` Getter for the field `title`.
`Date`	`getUpdateTimestamp()` Getter for the field `updateTimestamp`.
`boolean`	`givesPermissionInternal(Registration registration, Set<Integer> considered)` Short-circuit permission checking by providing a set of entities that have already been checked
`int`	`hashCode()`
`void`	`setAccession(String accession)` Setter for the field `accession`.
`void`	`setAlias(String alias)` Setter for the field `alias`.
`void`	`setBaseCaller(String baseCaller)` Setter for the field `baseCaller`.
`void`	`setCenterName(String centerName)` Setter for the field `centerName`.
`void`	`setCreateTimestamp(Date createTimestamp)` Setter for the field `createTimestamp`.
`void`	`setDescription(String description)` Setter for the field `description`.
`void`	`setExpectedNumberReads(Long expectedNumberReads)` Setter for the field `expectedNumberReads`.
`void`	`setExpectedNumberRuns(Integer expectedNumberRuns)` Setter for the field `expectedNumberRuns`.
`void`	`setExpectedNumberSpots(Long expectedNumberSpots)` Setter for the field `expectedNumberSpots`.
`void`	`setExperimentAttributes(Set<ExperimentAttribute> experimentAttributes)` Setter for the field `experimentAttributes`.
`void`	`setExperimentId(Integer experimentId)` Setter for the field `experimentId`.
`void`	`setExperimentLibraryDesign(ExperimentLibraryDesign experimentLibraryDesign)` Setter for the field `experimentLibraryDesign`.
`void`	`setExperimentSpotDesign(ExperimentSpotDesign experimentSpotDesign)` Setter for the field `experimentSpotDesign`.
`void`	`setExpLibDesignDesc(String expLibDesignDesc)` Setter for the field `expLibDesignDesc`.
`void`	`setExpLibDesignName(String expLibDesignName)` Setter for the field `expLibDesignName`.
`void`	`setExpLibDesignProtocol(String expLibDesignProtocol)` Setter for the field `expLibDesignProtocol`.
`void`	`setExpLibDesignSelection(Integer expLibDesignSelection)` Setter for the field `expLibDesignSelection`.
`void`	`setExpLibDesignSource(Integer expLibDesignSource)` Setter for the field `expLibDesignSource`.
`void`	`setExpLibDesignStrategy(Integer expLibDesignStrategy)` Setter for the field `expLibDesignStrategy`.
`void`	`setExpSpotDesignAdapterSpec(String expSpotDesignAdapterSpec)` Setter for the field `expSpotDesignAdapterSpec`.
`void`	`setExpSpotDesignReadsPerSpot(Integer expSpotDesignReadsPerSpot)` Setter for the field `expSpotDesignReadsPerSpot`.
`void`	`setExpSpotDesignTagSpec(String expSpotDesignTagSpec)` Setter for the field `expSpotDesignTagSpec`.
`void`	`setIsHasFile(Boolean isHasFile)` Setter for the field `isHasFile`.
`void`	`setIsSelected(Boolean isSelected)` Setter for the field `isSelected`.
`void`	`setName(String name)` Setter for the field `name`.
`void`	`setOwner(Registration owner)` Setter for the field `owner`.
`void`	`setPlatform(Platform platform)` Setter for the field `platform`.
`void`	`setPlatformInt(Integer platformInt)` Setter for the field `platformInt`.
`void`	`setProcessings(Set<Processing> processings)` Setter for the field `processings`.
`void`	`setQualityMultiplier(Integer qualityMultiplier)` Setter for the field `qualityMultiplier`.
`void`	`setQualityNumberOfLevels(Integer qualityNumberOfLevels)` Setter for the field `qualityNumberOfLevels`.
`void`	`setQualityScorer(String qualityScorer)` Setter for the field `qualityScorer`.
`void`	`setQualityType(String qualityType)` Setter for the field `qualityType`.
`void`	`setSamples(SortedSet<Sample> samples)` Setter for the field `samples`.
`void`	`setSequenceSpace(String sequenceSpace)` Setter for the field `sequenceSpace`.
`void`	`setSpotDesignReadSpec(String spotDesignReadSpec)` Setter for the field `spotDesignReadSpec`.
`void`	`setStatus(String status)` Setter for the field `status`.
`void`	`setStrExpectedNumberReads(String strExpectedNumberReads)` Setter for the field `strExpectedNumberReads`.
`void`	`setStrExpectedNumberRuns(String strExpectedNumberRuns)` Setter for the field `strExpectedNumberRuns`.
`void`	`setStudy(Study study)` Setter for the field `study`.
`void`	`setSwAccession(Integer swAccession)` Setter for the field `swAccession`.
`void`	`setTitle(String title)` Setter for the field `title`.
`void`	`setUpdateTimestamp(Date updateTimestamp)` Setter for the field `updateTimestamp`.
`String`	`toString()`

Methods inherited from class net.sourceforge.seqware.common.security.PermissionsAware
givesPermission, givesPermission

Methods inherited from class java.lang.Object
clone, finalize, getClass, notify, notifyAll, wait, wait, wait

- Constructor Detail
  - Experiment
```
public Experiment()
```
    Constructor for Experiment.
- Method Detail
  - compareTo
```
public int compareTo(Experiment that)
```
    Specified by:
    
    compareTo in interface Comparable<Experiment>
    
    Parameters:
    that -
  - toString
```
public String toString()
```
    Overrides:
    
    toString in class Object
  - equals
```
public boolean equals(Object other)
```
    Overrides:
    
    equals in class Object
    
    Parameters:
    other -
  - hashCode
```
public int hashCode()
```
    Overrides:
    
    hashCode in class Object
  - getPlatform
```
public Platform getPlatform()
```
    Getter for the field platform.
    
    Returns:
    a Platform object.
  - setPlatform
```
public void setPlatform(Platform platform)
```
    Setter for the field platform.
    
    Parameters:
    platform - a Platform object.
  - getExperimentLibraryDesign
```
public ExperimentLibraryDesign getExperimentLibraryDesign()
```
    Getter for the field experimentLibraryDesign.
    
    Returns:
    a ExperimentLibraryDesign object.
  - setExperimentLibraryDesign
```
public void setExperimentLibraryDesign(ExperimentLibraryDesign experimentLibraryDesign)
```
    Setter for the field experimentLibraryDesign.
    
    Parameters:
    experimentLibraryDesign - a ExperimentLibraryDesign object.
  - getExpLibDesignName
```
public String getExpLibDesignName()
```
    Getter for the field expLibDesignName.
    
    Returns:
    a String object.
  - setExpLibDesignName
```
public void setExpLibDesignName(String expLibDesignName)
```
    Setter for the field expLibDesignName.
    
    Parameters:
    expLibDesignName - a String object.
  - getExpLibDesignDesc
```
public String getExpLibDesignDesc()
```
    Getter for the field expLibDesignDesc.
    
    Returns:
    a String object.
  - setExpLibDesignDesc
```
public void setExpLibDesignDesc(String expLibDesignDesc)
```
    Setter for the field expLibDesignDesc.
    
    Parameters:
    expLibDesignDesc - a String object.
  - getExpLibDesignProtocol
```
public String getExpLibDesignProtocol()
```
    Getter for the field expLibDesignProtocol.
    
    Returns:
    a String object.
  - setExpLibDesignProtocol
```
public void setExpLibDesignProtocol(String expLibDesignProtocol)
```
    Setter for the field expLibDesignProtocol.
    
    Parameters:
    expLibDesignProtocol - a String object.
  - getExpLibDesignStrategy
```
public Integer getExpLibDesignStrategy()
```
    Getter for the field expLibDesignStrategy.
    
    Returns:
    a Integer object.
  - setExpLibDesignStrategy
```
public void setExpLibDesignStrategy(Integer expLibDesignStrategy)
```
    Setter for the field expLibDesignStrategy.
    
    Parameters:
    expLibDesignStrategy - a Integer object.
  - getExpLibDesignSource
```
public Integer getExpLibDesignSource()
```
    Getter for the field expLibDesignSource.
    
    Returns:
    a Integer object.
  - setExpLibDesignSource
```
public void setExpLibDesignSource(Integer expLibDesignSource)
```
    Setter for the field expLibDesignSource.
    
    Parameters:
    expLibDesignSource - a Integer object.
  - getExpLibDesignSelection
```
public Integer getExpLibDesignSelection()
```
    Getter for the field expLibDesignSelection.
    
    Returns:
    a Integer object.
  - setExpLibDesignSelection
```
public void setExpLibDesignSelection(Integer expLibDesignSelection)
```
    Setter for the field expLibDesignSelection.
    
    Parameters:
    expLibDesignSelection - a Integer object.
  - getSpotDesignReadSpec
```
public String getSpotDesignReadSpec()
```
    Getter for the field spotDesignReadSpec.
    
    Returns:
    a String object.
  - setSpotDesignReadSpec
```
public void setSpotDesignReadSpec(String spotDesignReadSpec)
```
    Setter for the field spotDesignReadSpec.
    
    Parameters:
    spotDesignReadSpec - a String object.
  - getPlatformInt
```
public Integer getPlatformInt()
```
    Getter for the field platformInt.
    
    Returns:
    a Integer object.
  - setPlatformInt
```
public void setPlatformInt(Integer platformInt)
```
    Setter for the field platformInt.
    
    Parameters:
    platformInt - a Integer object.
  - getExperimentId
```
public Integer getExperimentId()
```
    Getter for the field experimentId.
    
    Returns:
    a Integer object.
  - setExperimentId
```
public void setExperimentId(Integer experimentId)
```
    Setter for the field experimentId.
    
    Parameters:
    experimentId - a Integer object.
  - getSwAccession
```
public Integer getSwAccession()
```
    Getter for the field swAccession.
    
    Specified by:
    
    getSwAccession in interface FirstTierModel
    
    Returns:
    a Integer object.
  - setSwAccession
```
public void setSwAccession(Integer swAccession)
```
    Setter for the field swAccession.
    
    Parameters:
    swAccession - a Integer object.
  - getTitle
```
public String getTitle()
```
    Getter for the field title.
    
    Returns:
    a String object.
  - getJsonEscapeTitle
```
public String getJsonEscapeTitle()
```
    getJsonEscapeTitle.
    
    Returns:
    a String object.
  - setTitle
```
public void setTitle(String title)
```
    Setter for the field title.
    
    Parameters:
    title - a String object.
  - getName
```
public String getName()
```
    Getter for the field name.
    
    Returns:
    a String object.
  - getJsonEscapeName
```
public String getJsonEscapeName()
```
    getJsonEscapeName.
    
    Returns:
    a String object.
  - setName
```
public void setName(String name)
```
    Setter for the field name.
    
    Parameters:
    name - a String object.
  - getJsonEscapeDescription
```
public String getJsonEscapeDescription()
```
    getJsonEscapeDescription.
    
    Returns:
    a String object.
  - getJsonEscapeDescription200
```
public String getJsonEscapeDescription200()
```
    getJsonEscapeDescription200.
    
    Returns:
    a String object.
  - getDescription
```
public String getDescription()
```
    Getter for the field description.
    
    Returns:
    a String object.
  - setDescription
```
public void setDescription(String description)
```
    Setter for the field description.
    
    Parameters:
    description - a String object.
  - getAlias
```
public String getAlias()
```
    Getter for the field alias.
    
    Returns:
    a String object.
  - setAlias
```
public void setAlias(String alias)
```
    Setter for the field alias.
    
    Parameters:
    alias - a String object.
  - getAccession
```
public String getAccession()
```
    Getter for the field accession.
    
    Returns:
    a String object.
  - setAccession
```
public void setAccession(String accession)
```
    Setter for the field accession.
    
    Parameters:
    accession - a String object.
  - getStatus
```
public String getStatus()
```
    Getter for the field status.
    
    Returns:
    a String object.
  - setStatus
```
public void setStatus(String status)
```
    Setter for the field status.
    
    Parameters:
    status - a String object.
  - getCenterName
```
public String getCenterName()
```
    Getter for the field centerName.
    
    Returns:
    a String object.
  - setCenterName
```
public void setCenterName(String centerName)
```
    Setter for the field centerName.
    
    Parameters:
    centerName - a String object.
  - getSequenceSpace
```
public String getSequenceSpace()
```
    Getter for the field sequenceSpace.
    
    Returns:
    a String object.
  - setSequenceSpace
```
public void setSequenceSpace(String sequenceSpace)
```
    Setter for the field sequenceSpace.
    
    Parameters:
    sequenceSpace - a String object.
  - getBaseCaller
```
public String getBaseCaller()
```
    Getter for the field baseCaller.
    
    Returns:
    a String object.
  - setBaseCaller
```
public void setBaseCaller(String baseCaller)
```
    Setter for the field baseCaller.
    
    Parameters:
    baseCaller - a String object.
  - getQualityScorer
```
public String getQualityScorer()
```
    Getter for the field qualityScorer.
    
    Returns:
    a String object.
  - setQualityScorer
```
public void setQualityScorer(String qualityScorer)
```
    Setter for the field qualityScorer.
    
    Parameters:
    qualityScorer - a String object.
  - getQualityNumberOfLevels
```
public Integer getQualityNumberOfLevels()
```
    Getter for the field qualityNumberOfLevels.
    
    Returns:
    a Integer object.
  - setQualityNumberOfLevels
```
public void setQualityNumberOfLevels(Integer qualityNumberOfLevels)
```
    Setter for the field qualityNumberOfLevels.
    
    Parameters:
    qualityNumberOfLevels - a Integer object.
  - getQualityMultiplier
```
public Integer getQualityMultiplier()
```
    Getter for the field qualityMultiplier.
    
    Returns:
    a Integer object.
  - setQualityMultiplier
```
public void setQualityMultiplier(Integer qualityMultiplier)
```
    Setter for the field qualityMultiplier.
    
    Parameters:
    qualityMultiplier - a Integer object.
  - getQualityType
```
public String getQualityType()
```
    Getter for the field qualityType.
    
    Returns:
    a String object.
  - setQualityType
```
public void setQualityType(String qualityType)
```
    Setter for the field qualityType.
    
    Parameters:
    qualityType - a String object.
  - getExpectedNumberRuns
```
public Integer getExpectedNumberRuns()
```
    Getter for the field expectedNumberRuns.
    
    Returns:
    a Integer object.
  - setExpectedNumberRuns
```
public void setExpectedNumberRuns(Integer expectedNumberRuns)
```
    Setter for the field expectedNumberRuns.
    
    Parameters:
    expectedNumberRuns - a Integer object.
  - getExpectedNumberSpots
```
public Long getExpectedNumberSpots()
```
    Getter for the field expectedNumberSpots.
    
    Returns:
    a Long object.
  - setExpectedNumberSpots
```
public void setExpectedNumberSpots(Long expectedNumberSpots)
```
    Setter for the field expectedNumberSpots.
    
    Parameters:
    expectedNumberSpots - a Long object.
  - getExpectedNumberReads
```
public Long getExpectedNumberReads()
```
    Getter for the field expectedNumberReads.
    
    Returns:
    a Long object.
  - setExpectedNumberReads
```
public void setExpectedNumberReads(Long expectedNumberReads)
```
    Setter for the field expectedNumberReads.
    
    Parameters:
    expectedNumberReads - a Long object.
  - getOwner
```
public Registration getOwner()
```
    Getter for the field owner.
    
    Returns:
    a Registration object.
  - setOwner
```
public void setOwner(Registration owner)
```
    Setter for the field owner.
    
    Parameters:
    owner - a Registration object.
  - getStudy
```
public Study getStudy()
```
    Getter for the field study.
    
    Returns:
    a Study object.
  - setStudy
```
public void setStudy(Study study)
```
    Setter for the field study.
    
    Parameters:
    study - a Study object.
  - getCreateTimestamp
```
public Date getCreateTimestamp()
```
    Getter for the field createTimestamp.
    
    Returns:
    a Date object.
  - setCreateTimestamp
```
public void setCreateTimestamp(Date createTimestamp)
```
    Setter for the field createTimestamp.
    
    Parameters:
    createTimestamp - a Date object.
  - getUpdateTimestamp
```
public Date getUpdateTimestamp()
```
    Getter for the field updateTimestamp.
    
    Returns:
    a Date object.
  - setUpdateTimestamp
```
public void setUpdateTimestamp(Date updateTimestamp)
```
    Setter for the field updateTimestamp.
    
    Parameters:
    updateTimestamp - a Date object.
  - getSerialVersionUID
```
public static long getSerialVersionUID()
```
    Getter for the field serialVersionUID.
    
    Returns:
    a long.
  - getSamples
```
public SortedSet<Sample> getSamples()
```
    Getter for the field samples.
    
    Returns:
    a SortedSet object.
  - setSamples
```
public void setSamples(SortedSet<Sample> samples)
```
    Setter for the field samples.
    
    Parameters:
    samples - a SortedSet object.
  - getExpSpotDesignTagSpec
```
public String getExpSpotDesignTagSpec()
```
    Getter for the field expSpotDesignTagSpec.
    
    Returns:
    a String object.
  - setExpSpotDesignTagSpec
```
public void setExpSpotDesignTagSpec(String expSpotDesignTagSpec)
```
    Setter for the field expSpotDesignTagSpec.
    
    Parameters:
    expSpotDesignTagSpec - a String object.
  - getExpSpotDesignAdapterSpec
```
public String getExpSpotDesignAdapterSpec()
```
    Getter for the field expSpotDesignAdapterSpec.
    
    Returns:
    a String object.
  - setExpSpotDesignAdapterSpec
```
public void setExpSpotDesignAdapterSpec(String expSpotDesignAdapterSpec)
```
    Setter for the field expSpotDesignAdapterSpec.
    
    Parameters:
    expSpotDesignAdapterSpec - a String object.
  - getExpSpotDesignReadsPerSpot
```
public Integer getExpSpotDesignReadsPerSpot()
```
    Getter for the field expSpotDesignReadsPerSpot.
    
    Returns:
    a Integer object.
  - setExpSpotDesignReadsPerSpot
```
public void setExpSpotDesignReadsPerSpot(Integer expSpotDesignReadsPerSpot)
```
    Setter for the field expSpotDesignReadsPerSpot.
    
    Parameters:
    expSpotDesignReadsPerSpot - a Integer object.
  - getExperimentSpotDesign
```
public ExperimentSpotDesign getExperimentSpotDesign()
```
    Getter for the field experimentSpotDesign.
    
    Returns:
    a ExperimentSpotDesign object.
  - setExperimentSpotDesign
```
public void setExperimentSpotDesign(ExperimentSpotDesign experimentSpotDesign)
```
    Setter for the field experimentSpotDesign.
    
    Parameters:
    experimentSpotDesign - a ExperimentSpotDesign object.
  - getIsSelected
```
public Boolean getIsSelected()
```
    Getter for the field isSelected.
    
    Returns:
    a Boolean object.
  - setIsSelected
```
public void setIsSelected(Boolean isSelected)
```
    Setter for the field isSelected.
    
    Parameters:
    isSelected - a Boolean object.
  - getIsHasFile
```
public Boolean getIsHasFile()
```
    Getter for the field isHasFile.
    
    Returns:
    a Boolean object.
  - setIsHasFile
```
public void setIsHasFile(Boolean isHasFile)
```
    Setter for the field isHasFile.
    
    Parameters:
    isHasFile - a Boolean object.
  - getStrExpectedNumberRuns
```
public String getStrExpectedNumberRuns()
```
    Getter for the field strExpectedNumberRuns.
    
    Returns:
    a String object.
  - setStrExpectedNumberRuns
```
public void setStrExpectedNumberRuns(String strExpectedNumberRuns)
```
    Setter for the field strExpectedNumberRuns.
    
    Parameters:
    strExpectedNumberRuns - a String object.
  - getStrExpectedNumberReads
```
public String getStrExpectedNumberReads()
```
    Getter for the field strExpectedNumberReads.
    
    Returns:
    a String object.
  - setStrExpectedNumberReads
```
public void setStrExpectedNumberReads(String strExpectedNumberReads)
```
    Setter for the field strExpectedNumberReads.
    
    Parameters:
    strExpectedNumberReads - a String object.
  - getProcessings
```
public Set<Processing> getProcessings()
```
    Getter for the field processings.
    
    Returns:
    a Set object.
  - setProcessings
```
public void setProcessings(Set<Processing> processings)
```
    Setter for the field processings.
    
    Parameters:
    processings - a Set object.
  - getExperimentAttributes
```
public Set<ExperimentAttribute> getExperimentAttributes()
```
    Getter for the field experimentAttributes.
    
    Returns:
    a Set object.
  - setExperimentAttributes
```
public void setExperimentAttributes(Set<ExperimentAttribute> experimentAttributes)
```
    Setter for the field experimentAttributes.
    
    Parameters:
    experimentAttributes - a Set object.
  - givesPermissionInternal
```
public boolean givesPermissionInternal(Registration registration,
                              Set<Integer> considered)
```
    Description copied from class: PermissionsAware
    
    Short-circuit permission checking by providing a set of entities that have already been checked
    
    Specified by:
    
    givesPermissionInternal in class PermissionsAware
    
    Returns:
  - getAnnotations
```
public Set<ExperimentAttribute> getAnnotations()
```
    Description copied from interface: Annotatable
    
    Get the annotations for this model
    
    Specified by:
    
    getAnnotations in interface Annotatable<ExperimentAttribute>
    
    Returns:

Class Experiment

Constructor Summary

Method Summary

Methods inherited from class net.sourceforge.seqware.common.security.PermissionsAware

Methods inherited from class java.lang.Object

Constructor Detail

Experiment

Method Detail

compareTo

toString

equals

hashCode

getPlatform

setPlatform

getExperimentLibraryDesign

setExperimentLibraryDesign

getExpLibDesignName

setExpLibDesignName

getExpLibDesignDesc

setExpLibDesignDesc

getExpLibDesignProtocol

setExpLibDesignProtocol

getExpLibDesignStrategy

setExpLibDesignStrategy

getExpLibDesignSource

setExpLibDesignSource

getExpLibDesignSelection

setExpLibDesignSelection

getSpotDesignReadSpec

setSpotDesignReadSpec

getPlatformInt

setPlatformInt

getExperimentId

setExperimentId

getSwAccession

setSwAccession

getTitle

getJsonEscapeTitle

setTitle

getName

getJsonEscapeName

setName

getJsonEscapeDescription

getJsonEscapeDescription200

getDescription

setDescription

getAlias

setAlias

getAccession

setAccession

getStatus

setStatus

getCenterName

setCenterName

getSequenceSpace

setSequenceSpace

getBaseCaller

setBaseCaller

getQualityScorer

setQualityScorer

getQualityNumberOfLevels

setQualityNumberOfLevels

getQualityMultiplier

setQualityMultiplier

getQualityType

setQualityType

getExpectedNumberRuns

setExpectedNumberRuns

getExpectedNumberSpots

setExpectedNumberSpots

getExpectedNumberReads

setExpectedNumberReads

getOwner

setOwner

getStudy

setStudy

getCreateTimestamp

setCreateTimestamp

getUpdateTimestamp

setUpdateTimestamp