ExperimentSpotDesign (SeqWare 1.1.2 API)

java.lang.Object
- net.sourceforge.seqware.common.model.ExperimentSpotDesign

All Implemented Interfaces:

Serializable, Comparable<ExperimentSpotDesign>, SecondTierModel
```
public class ExperimentSpotDesign
extends Object
implements Serializable, Comparable<ExperimentSpotDesign>, SecondTierModel
```
ExperimentSpotDesign class.

Version:

$Id: $Id

Author:

boconnor

See Also:
Serialized Form

Constructor Summary

Constructors
Constructor and Description

ExperimentSpotDesign()
Constructor for ExperimentSpotDesign.

Constructors
Constructor and Description
`ExperimentSpotDesign()` Constructor for ExperimentSpotDesign.

Method Summary

Methods
Modifier and Type	Method and Description
`int`	`compareTo(ExperimentSpotDesign that)` compareTo.
`boolean`	`equals(Object other)`
`String`	`getAdapterSpec()` Getter for the field `adapterSpec`.
`Integer`	`getDecodeMethod()` Getter for the field `decodeMethod`.
`Integer`	`getExperimentSpotDesignId()` Getter for the field `experimentSpotDesignId`.
`int`	`getModelId()` Get the id for this model
`String`	`getReadSpec()` Getter for the field `readSpec`.
`SortedSet<ExperimentSpotDesignReadSpec>`	`getReadSpecs()` Getter for the field `readSpecs`.
`Integer`	`getReadsPerSpot()` Getter for the field `readsPerSpot`.
`static long`	`getSerialVersionUID()` Getter for the field `serialVersionUID`.
`String`	`getTagSpec()` Getter for the field `tagSpec`.
`int`	`hashCode()` hashCode.
`void`	`setAdapterSpec(String adapterSpec)` Setter for the field `adapterSpec`.
`void`	`setDecodeMethod(Integer decodeMethod)` Setter for the field `decodeMethod`.
`void`	`setExperimentSpotDesignId(Integer experimentSpotDesignId)` Setter for the field `experimentSpotDesignId`.
`void`	`setReadSpec(String readSpec)` Setter for the field `readSpec`.
`void`	`setReadSpecs(SortedSet<ExperimentSpotDesignReadSpec> readSpecs)` Setter for the field `readSpecs`.
`void`	`setReadsPerSpot(Integer readsPerSpot)` Setter for the field `readsPerSpot`.
`void`	`setTagSpec(String tagSpec)` Setter for the field `tagSpec`.
`String`	`toString()` toString.

Methods inherited from class java.lang.Object
clone, finalize, getClass, notify, notifyAll, wait, wait, wait

- Constructor Detail
  - ExperimentSpotDesign
```
public ExperimentSpotDesign()
```
    Constructor for ExperimentSpotDesign.
- Method Detail
  - compareTo
```
public int compareTo(ExperimentSpotDesign that)
```
    compareTo.
    
    Specified by:
    
    compareTo in interface Comparable<ExperimentSpotDesign>
    
    Parameters:
    that - a ExperimentSpotDesign object.
    
    Returns:
    a int.
  - toString
```
public String toString()
```
    toString.
    
    Overrides:
    
    toString in class Object
    
    Returns:
    a String object.
  - equals
```
public boolean equals(Object other)
```
    Overrides:
    
    equals in class Object
    
    Parameters:
    other -
  - hashCode
```
public int hashCode()
```
    hashCode.
    
    Overrides:
    
    hashCode in class Object
    
    Returns:
    a int.
  - getExperimentSpotDesignId
```
public Integer getExperimentSpotDesignId()
```
    Getter for the field experimentSpotDesignId.
    
    Returns:
    a Integer object.
  - setExperimentSpotDesignId
```
public void setExperimentSpotDesignId(Integer experimentSpotDesignId)
```
    Setter for the field experimentSpotDesignId.
    
    Parameters:
    experimentSpotDesignId - a Integer object.
  - getDecodeMethod
```
public Integer getDecodeMethod()
```
    Getter for the field decodeMethod.
    
    Returns:
    a Integer object.
  - setDecodeMethod
```
public void setDecodeMethod(Integer decodeMethod)
```
    Setter for the field decodeMethod.
    
    Parameters:
    decodeMethod - a Integer object.
  - getReadsPerSpot
```
public Integer getReadsPerSpot()
```
    Getter for the field readsPerSpot.
    
    Returns:
    a Integer object.
  - setReadsPerSpot
```
public void setReadsPerSpot(Integer readsPerSpot)
```
    Setter for the field readsPerSpot.
    
    Parameters:
    readsPerSpot - a Integer object.
  - getReadSpec
```
public String getReadSpec()
```
    Getter for the field readSpec.
    
    Returns:
    a String object.
  - setReadSpec
```
public void setReadSpec(String readSpec)
```
    Setter for the field readSpec.
    
    Parameters:
    readSpec - a String object.
  - getTagSpec
```
public String getTagSpec()
```
    Getter for the field tagSpec.
    
    Returns:
    a String object.
  - setTagSpec
```
public void setTagSpec(String tagSpec)
```
    Setter for the field tagSpec.
    
    Parameters:
    tagSpec - a String object.
  - getAdapterSpec
```
public String getAdapterSpec()
```
    Getter for the field adapterSpec.
    
    Returns:
    a String object.
  - setAdapterSpec
```
public void setAdapterSpec(String adapterSpec)
```
    Setter for the field adapterSpec.
    
    Parameters:
    adapterSpec - a String object.
  - getSerialVersionUID
```
public static long getSerialVersionUID()
```
    Getter for the field serialVersionUID.
    
    Returns:
    a long.
  - getReadSpecs
```
public SortedSet<ExperimentSpotDesignReadSpec> getReadSpecs()
```
    Getter for the field readSpecs.
    
    Returns:
    a SortedSet object.
  - setReadSpecs
```
public void setReadSpecs(SortedSet<ExperimentSpotDesignReadSpec> readSpecs)
```
    Setter for the field readSpecs.
    
    Parameters:
    readSpecs - a SortedSet object.
  - getModelId
```
public int getModelId()
```
    Description copied from interface: SecondTierModel
    
    Get the id for this model
    
    Specified by:
    
    getModelId in interface SecondTierModel
    
    Returns:

Class ExperimentSpotDesign

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Constructor Detail

ExperimentSpotDesign

Method Detail

compareTo

toString

equals

hashCode

getExperimentSpotDesignId

setExperimentSpotDesignId

getDecodeMethod

setDecodeMethod

getReadsPerSpot

setReadsPerSpot

getReadSpec

setReadSpec

getTagSpec

setTagSpec

getAdapterSpec

setAdapterSpec

getSerialVersionUID

getReadSpecs

setReadSpecs

getModelId