Serialized Form (SeqWare 1.1.2 API)

Package io.seqware.webservice.generated.model
- Class io.seqware.webservice.generated.model.Expense extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - expenseId
```
Integer expenseId
```
    - workflowRunId
```
Integer workflowRunId
```
    - agent
```
String agent
```
    - expenseType
```
String expenseType
```
    - description
```
String description
```
    - pricePerUnit
```
BigInteger pricePerUnit
```
    - totalUnits
```
BigInteger totalUnits
```
    - totalPrice
```
BigInteger totalPrice
```
    - addedSurcharge
```
BigInteger addedSurcharge
```
    - swAccession
```
Integer swAccession
```
    - expenseFinishedTstmp
```
Date expenseFinishedTstmp
```
    - invoiceId
```
Invoice invoiceId
```
    - expenseAttributeCollection
```
Collection<E> expenseAttributeCollection
```
- Class io.seqware.webservice.generated.model.ExpenseAttribute extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - expenseAttributeId
```
Integer expenseAttributeId
```
    - tag
```
String tag
```
    - value
```
String value
```
    - units
```
String units
```
    - expenseId
```
Expense expenseId
```
- Class io.seqware.webservice.generated.model.Experiment extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - experimentId
```
Integer experimentId
```
    - name
```
String name
```
    - title
```
String title
```
    - description
```
String description
```
    - alias
```
String alias
```
    - accession
```
String accession
```
    - status
```
String status
```
    - centerName
```
String centerName
```
    - sequenceSpace
```
String sequenceSpace
```
    - baseCaller
```
String baseCaller
```
    - qualityScorer
```
String qualityScorer
```
    - qualityNumberOfLevels
```
Integer qualityNumberOfLevels
```
    - qualityMultiplier
```
Integer qualityMultiplier
```
    - qualityType
```
String qualityType
```
    - expectedNumberRuns
```
Integer expectedNumberRuns
```
    - expectedNumberSpots
```
BigInteger expectedNumberSpots
```
    - expectedNumberReads
```
BigInteger expectedNumberReads
```
    - swAccession
```
Integer swAccession
```
    - createTstmp
```
Date createTstmp
```
    - updateTstmp
```
Timestamp updateTstmp
```
    - experimentAttributeCollection
```
Collection<E> experimentAttributeCollection
```
    - studyId
```
Study studyId
```
    - ownerId
```
Registration ownerId
```
    - platformId
```
Platform platformId
```
    - experimentSpotDesignId
```
ExperimentSpotDesign experimentSpotDesignId
```
    - experimentLibraryDesignId
```
ExperimentLibraryDesign experimentLibraryDesignId
```
    - processingExperimentsCollection
```
Collection<E> processingExperimentsCollection
```
    - sampleCollection
```
Collection<E> sampleCollection
```
    - experimentLinkCollection
```
Collection<E> experimentLinkCollection
```
- Class io.seqware.webservice.generated.model.ExperimentAttribute extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - experimentAttributeId
```
Integer experimentAttributeId
```
    - tag
```
String tag
```
    - value
```
String value
```
    - units
```
String units
```
    - experimentId
```
Experiment experimentId
```
- Class io.seqware.webservice.generated.model.ExperimentLibraryDesign extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - experimentLibraryDesignId
```
Integer experimentLibraryDesignId
```
    - name
```
String name
```
    - description
```
String description
```
    - constructionProtocol
```
String constructionProtocol
```
    - layout
```
String layout
```
    - pairedOrientation
```
String pairedOrientation
```
    - nominalLength
```
Integer nominalLength
```
    - nominalSdev
```
Double nominalSdev
```
    - experimentCollection
```
Collection<E> experimentCollection
```
    - strategy
```
LibraryStrategy strategy
```
    - source
```
LibrarySource source
```
    - selection
```
LibrarySelection selection
```
- Class io.seqware.webservice.generated.model.ExperimentLink extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - experimentLinkId
```
Integer experimentLinkId
```
    - label
```
String label
```
    - url
```
String url
```
    - db
```
String db
```
    - id
```
String id
```
    - experimentId
```
Experiment experimentId
```
- Class io.seqware.webservice.generated.model.ExperimentSpotDesign extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - experimentSpotDesignId
```
Integer experimentSpotDesignId
```
    - decodeMethod
```
Integer decodeMethod
```
    - readsPerSpot
```
Integer readsPerSpot
```
    - readSpec
```
String readSpec
```
    - tagSpec
```
String tagSpec
```
    - adapterSpec
```
String adapterSpec
```
    - experimentCollection
```
Collection<E> experimentCollection
```
    - experimentSpotDesignReadSpecCollection
```
Collection<E> experimentSpotDesignReadSpecCollection
```
- Class io.seqware.webservice.generated.model.ExperimentSpotDesignReadSpec extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - experimentSpotDesignReadSpecId
```
Integer experimentSpotDesignReadSpecId
```
    - readIndex
```
Integer readIndex
```
    - readLabel
```
String readLabel
```
    - readClass
```
String readClass
```
    - readType
```
String readType
```
    - baseCoord
```
Integer baseCoord
```
    - cycleCoord
```
Integer cycleCoord
```
    - length
```
Integer length
```
    - expectedBasecall
```
String expectedBasecall
```
    - experimentSpotDesignId
```
ExperimentSpotDesign experimentSpotDesignId
```
- Class io.seqware.webservice.generated.model.File extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - workflowRunCollection
```
Collection<E> workflowRunCollection
```
    - fileId
```
Integer fileId
```
    - filePath
```
String filePath
```
    - md5sum
```
String md5sum
```
    - url
```
String url
```
    - urlLabel
```
String urlLabel
```
    - type
```
String type
```
    - metaType
```
String metaType
```
    - description
```
String description
```
    - swAccession
```
Integer swAccession
```
    - size
```
BigInteger size
```
    - skip
```
Boolean skip
```
    - fileAttributeCollection
```
Collection<E> fileAttributeCollection
```
    - ownerId
```
Registration ownerId
```
    - fileTypeId
```
FileType fileTypeId
```
    - processingFilesCollection
```
Collection<E> processingFilesCollection
```
- Class io.seqware.webservice.generated.model.FileAttribute extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - fileAttributeId
```
Integer fileAttributeId
```
    - tag
```
String tag
```
    - value
```
String value
```
    - unit
```
String unit
```
    - fileId
```
File fileId
```
- Class io.seqware.webservice.generated.model.FileReport extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - rowId
```
Integer rowId
```
    - studyId
```
Integer studyId
```
    - iusId
```
Integer iusId
```
    - laneId
```
Integer laneId
```
    - fileId
```
Integer fileId
```
    - sampleId
```
Integer sampleId
```
    - experimentId
```
Integer experimentId
```
    - childSampleId
```
Integer childSampleId
```
    - processingId
```
Integer processingId
```
- Class io.seqware.webservice.generated.model.FileType extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - fileTypeId
```
Integer fileTypeId
```
    - displayName
```
String displayName
```
    - metaType
```
String metaType
```
    - extension
```
String extension
```
    - fileCollection
```
Collection<E> fileCollection
```
- Class io.seqware.webservice.generated.model.Invoice extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - invoiceId
```
Integer invoiceId
```
    - startDate
```
Date startDate
```
    - endDate
```
Date endDate
```
    - state
```
String state
```
    - finalized
```
Boolean finalized
```
    - fullyPaid
```
Boolean fullyPaid
```
    - paidAmount
```
BigInteger paidAmount
```
    - daysUntilDue
```
Integer daysUntilDue
```
    - externalId
```
String externalId
```
    - clientNotes
```
String clientNotes
```
    - notes
```
String notes
```
    - swAccession
```
Integer swAccession
```
    - createTstmp
```
Date createTstmp
```
    - ownerId
```
Registration ownerId
```
    - invoiceAttributeCollection
```
Collection<E> invoiceAttributeCollection
```
    - expenseCollection
```
Collection<E> expenseCollection
```
- Class io.seqware.webservice.generated.model.InvoiceAttribute extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - invoiceAttributeId
```
Integer invoiceAttributeId
```
    - tag
```
String tag
```
    - value
```
String value
```
    - units
```
String units
```
    - invoiceId
```
Invoice invoiceId
```
- Class io.seqware.webservice.generated.model.Ius extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - iusId
```
Integer iusId
```
    - name
```
String name
```
    - alias
```
String alias
```
    - description
```
String description
```
    - tag
```
String tag
```
    - swAccession
```
Integer swAccession
```
    - createTstmp
```
Date createTstmp
```
    - updateTstmp
```
Timestamp updateTstmp
```
    - skip
```
Boolean skip
```
    - iusWorkflowRunsCollection
```
Collection<E> iusWorkflowRunsCollection
```
    - iusAttributeCollection
```
Collection<E> iusAttributeCollection
```
    - sampleId
```
Sample sampleId
```
    - ownerId
```
Registration ownerId
```
    - laneId
```
Lane laneId
```
    - processingIusCollection
```
Collection<E> processingIusCollection
```
- Class io.seqware.webservice.generated.model.IusAttribute extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - iusAttributeId
```
Integer iusAttributeId
```
    - tag
```
String tag
```
    - value
```
String value
```
    - units
```
String units
```
    - iusId
```
Ius iusId
```
- Class io.seqware.webservice.generated.model.IusWorkflowRuns extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - iusWorkflowRunsId
```
Integer iusWorkflowRunsId
```
    - workflowRunId
```
WorkflowRun workflowRunId
```
    - iusId
```
Ius iusId
```
- Class io.seqware.webservice.generated.model.Lane extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - laneId
```
Integer laneId
```
    - name
```
String name
```
    - alias
```
String alias
```
    - description
```
String description
```
    - laneIndex
```
Integer laneIndex
```
    - cycleDescriptor
```
String cycleDescriptor
```
    - cycleCount
```
Integer cycleCount
```
    - cycleSequence
```
String cycleSequence
```
    - skip
```
Boolean skip
```
    - tags
```
String tags
```
    - regions
```
String regions
```
    - swAccession
```
Integer swAccession
```
    - createTstmp
```
Date createTstmp
```
    - updateTstmp
```
Timestamp updateTstmp
```
    - laneAttributeCollection
```
Collection<E> laneAttributeCollection
```
    - processingLanesCollection
```
Collection<E> processingLanesCollection
```
    - laneWorkflowRunsCollection
```
Collection<E> laneWorkflowRunsCollection
```
    - studyType
```
StudyType studyType
```
    - sequencerRunId
```
SequencerRun sequencerRunId
```
    - sampleId
```
Sample sampleId
```
    - ownerId
```
Registration ownerId
```
    - organismId
```
Organism organismId
```
    - libraryStrategy
```
LibraryStrategy libraryStrategy
```
    - librarySource
```
LibrarySource librarySource
```
    - librarySelection
```
LibrarySelection librarySelection
```
    - type
```
LaneType type
```
    - iusCollection
```
Collection<E> iusCollection
```
- Class io.seqware.webservice.generated.model.LaneAttribute extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - laneAttributeId
```
Integer laneAttributeId
```
    - tag
```
String tag
```
    - value
```
String value
```
    - units
```
String units
```
    - laneId
```
Lane laneId
```
- Class io.seqware.webservice.generated.model.LaneType extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - laneTypeId
```
Integer laneTypeId
```
    - code
```
String code
```
    - name
```
String name
```
    - laneCollection
```
Collection<E> laneCollection
```
- Class io.seqware.webservice.generated.model.LaneWorkflowRuns extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - laneWorkflowRunsId
```
Integer laneWorkflowRunsId
```
    - workflowRunId
```
WorkflowRun workflowRunId
```
    - laneId
```
Lane laneId
```
- Class io.seqware.webservice.generated.model.LibrarySelection extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - librarySelectionId
```
Integer librarySelectionId
```
    - name
```
String name
```
    - description
```
String description
```
    - laneCollection
```
Collection<E> laneCollection
```
    - experimentLibraryDesignCollection
```
Collection<E> experimentLibraryDesignCollection
```
- Class io.seqware.webservice.generated.model.LibrarySource extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - librarySourceId
```
Integer librarySourceId
```
    - name
```
String name
```
    - description
```
String description
```
    - laneCollection
```
Collection<E> laneCollection
```
    - experimentLibraryDesignCollection
```
Collection<E> experimentLibraryDesignCollection
```
- Class io.seqware.webservice.generated.model.LibraryStrategy extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - libraryStrategyId
```
Integer libraryStrategyId
```
    - name
```
String name
```
    - description
```
String description
```
    - laneCollection
```
Collection<E> laneCollection
```
    - experimentLibraryDesignCollection
```
Collection<E> experimentLibraryDesignCollection
```
- Class io.seqware.webservice.generated.model.Organism extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - organismId
```
Integer organismId
```
    - code
```
String code
```
    - name
```
String name
```
    - accession
```
String accession
```
    - ncbiTaxid
```
Integer ncbiTaxid
```
    - laneCollection
```
Collection<E> laneCollection
```
    - sampleCollection
```
Collection<E> sampleCollection
```
- Class io.seqware.webservice.generated.model.Platform extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - platformId
```
Integer platformId
```
    - name
```
String name
```
    - instrumentModel
```
String instrumentModel
```
    - description
```
String description
```
    - experimentCollection
```
Collection<E> experimentCollection
```
    - sequencerRunCollection
```
Collection<E> sequencerRunCollection
```
- Class io.seqware.webservice.generated.model.Processing extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - processingId
```
Integer processingId
```
    - algorithm
```
String algorithm
```
    - status
```
String status
```
    - description
```
String description
```
    - url
```
String url
```
    - urlLabel
```
String urlLabel
```
    - version
```
String version
```
    - parameters
```
String parameters
```
    - stdout
```
String stdout
```
    - stderr
```
String stderr
```
    - exitStatus
```
Integer exitStatus
```
    - processExitStatus
```
Integer processExitStatus
```
    - taskGroup
```
Boolean taskGroup
```
    - swAccession
```
Integer swAccession
```
    - runStartTstmp
```
Date runStartTstmp
```
    - runStopTstmp
```
Date runStopTstmp
```
    - createTstmp
```
Date createTstmp
```
    - updateTstmp
```
Timestamp updateTstmp
```
    - processingAttributeCollection
```
Collection<E> processingAttributeCollection
```
    - workflowRunId
```
WorkflowRun workflowRunId
```
    - ancestorWorkflowRunId
```
WorkflowRun ancestorWorkflowRunId
```
    - ownerId
```
Registration ownerId
```
    - processingLanesCollection
```
Collection<E> processingLanesCollection
```
    - processingExperimentsCollection
```
Collection<E> processingExperimentsCollection
```
    - processingSequencerRunsCollection
```
Collection<E> processingSequencerRunsCollection
```
    - processingSamplesCollection
```
Collection<E> processingSamplesCollection
```
    - processingIusCollection
```
Collection<E> processingIusCollection
```
    - processingRelationshipCollection
```
Collection<E> processingRelationshipCollection
```
    - processingRelationshipCollection1
```
Collection<E> processingRelationshipCollection1
```
    - processingStudiesCollection
```
Collection<E> processingStudiesCollection
```
    - processingFilesCollection
```
Collection<E> processingFilesCollection
```
- Class io.seqware.webservice.generated.model.ProcessingAttribute extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - processingAttributeId
```
Integer processingAttributeId
```
    - tag
```
String tag
```
    - value
```
String value
```
    - units
```
String units
```
    - processingId
```
Processing processingId
```
- Class io.seqware.webservice.generated.model.ProcessingExperiments extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - processingExperimentsId
```
Integer processingExperimentsId
```
    - description
```
String description
```
    - label
```
String label
```
    - url
```
String url
```
    - swAccession
```
Integer swAccession
```
    - processingId
```
Processing processingId
```
    - experimentId
```
Experiment experimentId
```
- Class io.seqware.webservice.generated.model.ProcessingFiles extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - processingFilesId
```
Integer processingFilesId
```
    - processingId
```
Processing processingId
```
    - fileId
```
File fileId
```
- Class io.seqware.webservice.generated.model.ProcessingIus extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - processingIusId
```
Integer processingIusId
```
    - description
```
String description
```
    - label
```
String label
```
    - url
```
String url
```
    - swAccession
```
Integer swAccession
```
    - processingId
```
Processing processingId
```
    - iusId
```
Ius iusId
```
- Class io.seqware.webservice.generated.model.ProcessingLanes extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - processingLanesId
```
Integer processingLanesId
```
    - description
```
String description
```
    - label
```
String label
```
    - url
```
String url
```
    - swAccession
```
Integer swAccession
```
    - processingId
```
Processing processingId
```
    - laneId
```
Lane laneId
```
- Class io.seqware.webservice.generated.model.ProcessingRelationship extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - processingRelationshipId
```
Integer processingRelationshipId
```
    - relationship
```
String relationship
```
    - parentId
```
Processing parentId
```
    - childId
```
Processing childId
```
- Class io.seqware.webservice.generated.model.ProcessingSamples extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - processingSamplesId
```
Integer processingSamplesId
```
    - description
```
String description
```
    - label
```
String label
```
    - url
```
String url
```
    - swAccession
```
Integer swAccession
```
    - sampleId
```
Sample sampleId
```
    - processingId
```
Processing processingId
```
- Class io.seqware.webservice.generated.model.ProcessingSequencerRuns extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - processingSequencerRunsId
```
Integer processingSequencerRunsId
```
    - description
```
String description
```
    - label
```
String label
```
    - url
```
String url
```
    - swAccession
```
Integer swAccession
```
    - sequencerRunId
```
SequencerRun sequencerRunId
```
    - processingId
```
Processing processingId
```
- Class io.seqware.webservice.generated.model.ProcessingStudies extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - processingStudiesId
```
Integer processingStudiesId
```
    - description
```
String description
```
    - label
```
String label
```
    - url
```
String url
```
    - swAccession
```
Integer swAccession
```
    - studyId
```
Study studyId
```
    - processingId
```
Processing processingId
```
- Class io.seqware.webservice.generated.model.Registration extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - registrationId
```
Integer registrationId
```
    - email
```
String email
```
    - password
```
String password
```
    - passwordHint
```
String passwordHint
```
    - firstName
```
String firstName
```
    - lastName
```
String lastName
```
    - institution
```
String institution
```
    - invitationCode
```
String invitationCode
```
    - limsAdmin
```
boolean limsAdmin
```
    - createTstmp
```
Date createTstmp
```
    - lastUpdateTstmp
```
Date lastUpdateTstmp
```
    - developerMl
```
boolean developerMl
```
    - userMl
```
boolean userMl
```
    - payee
```
boolean payee
```
    - invoiceCollection
```
Collection<E> invoiceCollection
```
    - studyCollection
```
Collection<E> studyCollection
```
    - fileCollection
```
Collection<E> fileCollection
```
    - experimentCollection
```
Collection<E> experimentCollection
```
    - processingCollection
```
Collection<E> processingCollection
```
    - workflowRunCollection
```
Collection<E> workflowRunCollection
```
    - sequencerRunCollection
```
Collection<E> sequencerRunCollection
```
    - workflowCollection
```
Collection<E> workflowCollection
```
    - laneCollection
```
Collection<E> laneCollection
```
    - shareWorkflowRunCollection
```
Collection<E> shareWorkflowRunCollection
```
    - sampleCollection
```
Collection<E> sampleCollection
```
    - shareStudyCollection
```
Collection<E> shareStudyCollection
```
    - iusCollection
```
Collection<E> iusCollection
```
- Class io.seqware.webservice.generated.model.Sample extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - sampleId
```
Integer sampleId
```
    - name
```
String name
```
    - title
```
String title
```
    - alias
```
String alias
```
    - type
```
String type
```
    - scientificName
```
String scientificName
```
    - commonName
```
String commonName
```
    - anonymizedName
```
String anonymizedName
```
    - individualName
```
String individualName
```
    - description
```
String description
```
    - taxonId
```
Integer taxonId
```
    - tags
```
String tags
```
    - adapters
```
String adapters
```
    - regions
```
String regions
```
    - expectedNumberRuns
```
Integer expectedNumberRuns
```
    - expectedNumberSpots
```
Integer expectedNumberSpots
```
    - expectedNumberReads
```
Integer expectedNumberReads
```
    - skip
```
Boolean skip
```
    - isPublic
```
Boolean isPublic
```
    - swAccession
```
Integer swAccession
```
    - createTstmp
```
Date createTstmp
```
    - updateTstmp
```
Timestamp updateTstmp
```
    - sampleCollection
```
Collection<E> sampleCollection
```
    - sampleCollection1
```
Collection<E> sampleCollection1
```
    - laneCollection
```
Collection<E> laneCollection
```
    - ownerId
```
Registration ownerId
```
    - organismId
```
Organism organismId
```
    - experimentId
```
Experiment experimentId
```
    - iusCollection
```
Collection<E> iusCollection
```
    - processingSamplesCollection
```
Collection<E> processingSamplesCollection
```
    - sampleAttributeCollection
```
Collection<E> sampleAttributeCollection
```
    - sampleRelationshipCollection
```
Collection<E> sampleRelationshipCollection
```
    - sampleRelationshipCollection1
```
Collection<E> sampleRelationshipCollection1
```
- Class io.seqware.webservice.generated.model.SampleAttribute extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - sampleAttributeId
```
Integer sampleAttributeId
```
    - tag
```
String tag
```
    - value
```
String value
```
    - units
```
String units
```
    - sampleId
```
Sample sampleId
```
- Class io.seqware.webservice.generated.model.SampleRelationship extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - sampleRelationshipId
```
Integer sampleRelationshipId
```
    - relationship
```
String relationship
```
    - parentId
```
Sample parentId
```
    - childId
```
Sample childId
```
- Class io.seqware.webservice.generated.model.SampleReport extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - studyId
```
Integer studyId
```
    - childSampleId
```
Integer childSampleId
```
    - workflowId
```
Integer workflowId
```
    - status
```
String status
```
    - sequencerRunId
```
Integer sequencerRunId
```
    - laneId
```
Integer laneId
```
    - iusId
```
Integer iusId
```
    - rowId
```
Integer rowId
```
- Class io.seqware.webservice.generated.model.SequencerRun extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - sequencerRunId
```
Integer sequencerRunId
```
    - name
```
String name
```
    - description
```
String description
```
    - status
```
String status
```
    - instrumentName
```
String instrumentName
```
    - cycleDescriptor
```
String cycleDescriptor
```
    - cycleCount
```
Integer cycleCount
```
    - cycleSequence
```
String cycleSequence
```
    - filePath
```
String filePath
```
    - pairedEnd
```
Boolean pairedEnd
```
    - process
```
Boolean process
```
    - refLane
```
Integer refLane
```
    - pairedFilePath
```
String pairedFilePath
```
    - useIparIntensities
```
Boolean useIparIntensities
```
    - colorMatrix
```
String colorMatrix
```
    - colorMatrixCode
```
String colorMatrixCode
```
    - slideCount
```
Integer slideCount
```
    - slide1LaneCount
```
Integer slide1LaneCount
```
    - slide1FilePath
```
String slide1FilePath
```
    - slide2LaneCount
```
Integer slide2LaneCount
```
    - slide2FilePath
```
String slide2FilePath
```
    - flowSequence
```
String flowSequence
```
    - flowCount
```
Integer flowCount
```
    - runCenter
```
String runCenter
```
    - baseCaller
```
String baseCaller
```
    - qualityScorer
```
String qualityScorer
```
    - swAccession
```
Integer swAccession
```
    - createTstmp
```
Date createTstmp
```
    - updateTstmp
```
Timestamp updateTstmp
```
    - skip
```
Boolean skip
```
    - ownerId
```
Registration ownerId
```
    - platformId
```
Platform platformId
```
    - processingSequencerRunsCollection
```
Collection<E> processingSequencerRunsCollection
```
    - laneCollection
```
Collection<E> laneCollection
```
    - sequencerRunAttributeCollection
```
Collection<E> sequencerRunAttributeCollection
```
- Class io.seqware.webservice.generated.model.SequencerRunAttribute extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - sequencerRunAttributeId
```
Integer sequencerRunAttributeId
```
    - tag
```
String tag
```
    - value
```
String value
```
    - units
```
String units
```
    - sampleId
```
SequencerRun sampleId
```
- Class io.seqware.webservice.generated.model.ShareStudy extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - shareStudyId
```
Integer shareStudyId
```
    - active
```
Boolean active
```
    - swAccession
```
Integer swAccession
```
    - createTstmp
```
Date createTstmp
```
    - updateTstmp
```
Date updateTstmp
```
    - studyId
```
Study studyId
```
    - registrationId
```
Registration registrationId
```
- Class io.seqware.webservice.generated.model.ShareWorkflowRun extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - shareWorkflowRunId
```
Integer shareWorkflowRunId
```
    - active
```
Boolean active
```
    - swAccession
```
Integer swAccession
```
    - createTstmp
```
Date createTstmp
```
    - updateTstmp
```
Date updateTstmp
```
    - workflowRunId
```
WorkflowRun workflowRunId
```
    - registrationId
```
Registration registrationId
```
- Class io.seqware.webservice.generated.model.Study extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - studyId
```
Integer studyId
```
    - title
```
String title
```
    - alias
```
String alias
```
    - description
```
String description
```
    - accession
```
String accession
```
    - abstract1
```
String abstract1
```
    - newType
```
String newType
```
    - centerName
```
String centerName
```
    - centerProjectName
```
String centerProjectName
```
    - projectId
```
int projectId
```
    - status
```
String status
```
    - swAccession
```
Integer swAccession
```
    - createTstmp
```
Date createTstmp
```
    - updateTstmp
```
Timestamp updateTstmp
```
    - existingType
```
StudyType existingType
```
    - ownerId
```
Registration ownerId
```
    - experimentCollection
```
Collection<E> experimentCollection
```
    - studyAttributeCollection
```
Collection<E> studyAttributeCollection
```
    - shareStudyCollection
```
Collection<E> shareStudyCollection
```
    - processingStudiesCollection
```
Collection<E> processingStudiesCollection
```
- Class io.seqware.webservice.generated.model.StudyAttribute extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - studyAttributeId
```
Integer studyAttributeId
```
    - tag
```
String tag
```
    - value
```
String value
```
    - units
```
String units
```
    - studyId
```
Study studyId
```
- Class io.seqware.webservice.generated.model.StudyType extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - studyTypeId
```
Integer studyTypeId
```
    - name
```
String name
```
    - description
```
String description
```
    - studyCollection
```
Collection<E> studyCollection
```
    - laneCollection
```
Collection<E> laneCollection
```
- Class io.seqware.webservice.generated.model.Workflow extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - workflowId
```
Integer workflowId
```
    - name
```
String name
```
    - description
```
String description
```
    - inputAlgorithm
```
String inputAlgorithm
```
    - version
```
String version
```
    - seqwareVersion
```
String seqwareVersion
```
    - baseIniFile
```
String baseIniFile
```
    - cmd
```
String cmd
```
    - currentWorkingDir
```
String currentWorkingDir
```
    - host
```
String host
```
    - username
```
String username
```
    - workflowTemplate
```
String workflowTemplate
```
    - createTstmp
```
Date createTstmp
```
    - updateTstmp
```
Timestamp updateTstmp
```
    - swAccession
```
Integer swAccession
```
    - permanentBundleLocation
```
String permanentBundleLocation
```
    - workflowClass
```
String workflowClass
```
    - workflowType
```
String workflowType
```
    - workflowEngine
```
String workflowEngine
```
    - workflowParamCollection
```
Collection<E> workflowParamCollection
```
    - workflowRunCollection
```
Collection<E> workflowRunCollection
```
    - workflowAttributeCollection
```
Collection<E> workflowAttributeCollection
```
    - ownerId
```
Registration ownerId
```
- Class io.seqware.webservice.generated.model.WorkflowAttribute extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - workflowAttributeId
```
Integer workflowAttributeId
```
    - tag
```
String tag
```
    - value
```
String value
```
    - unit
```
String unit
```
    - workflowId
```
Workflow workflowId
```
- Class io.seqware.webservice.generated.model.WorkflowParam extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - workflowParamId
```
Integer workflowParamId
```
    - type
```
String type
```
    - key
```
String key
```
    - display
```
Boolean display
```
    - displayName
```
String displayName
```
    - fileMetaType
```
String fileMetaType
```
    - defaultValue
```
String defaultValue
```
    - workflowParamValueCollection
```
Collection<E> workflowParamValueCollection
```
    - workflowId
```
Workflow workflowId
```
- Class io.seqware.webservice.generated.model.WorkflowParamValue extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - workflowParamValueId
```
Integer workflowParamValueId
```
    - displayName
```
String displayName
```
    - value
```
String value
```
    - workflowParamId
```
WorkflowParam workflowParamId
```
- Class io.seqware.webservice.generated.model.WorkflowRun extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - fileCollection
```
Collection<E> fileCollection
```
    - workflowRunId
```
Integer workflowRunId
```
    - name
```
String name
```
    - iniFile
```
String iniFile
```
    - cmd
```
String cmd
```
    - workflowTemplate
```
String workflowTemplate
```
    - dax
```
String dax
```
    - status
```
String status
```
    - statusCmd
```
String statusCmd
```
    - seqwareRevision
```
String seqwareRevision
```
    - host
```
String host
```
    - currentWorkingDir
```
String currentWorkingDir
```
    - username
```
String username
```
    - stderr
```
String stderr
```
    - stdout
```
String stdout
```
    - createTstmp
```
Date createTstmp
```
    - updateTstmp
```
Timestamp updateTstmp
```
    - swAccession
```
Integer swAccession
```
    - workflowEngine
```
String workflowEngine
```
    - processingCollection
```
Collection<E> processingCollection
```
    - processingCollection1
```
Collection<E> processingCollection1
```
    - workflowId
```
Workflow workflowId
```
    - ownerId
```
Registration ownerId
```
    - iusWorkflowRunsCollection
```
Collection<E> iusWorkflowRunsCollection
```
    - workflowRunAttributeCollection
```
Collection<E> workflowRunAttributeCollection
```
    - laneWorkflowRunsCollection
```
Collection<E> laneWorkflowRunsCollection
```
    - shareWorkflowRunCollection
```
Collection<E> shareWorkflowRunCollection
```
    - workflowRunParamCollection
```
Collection<E> workflowRunParamCollection
```
- Class io.seqware.webservice.generated.model.WorkflowRunAttribute extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - workflowRunAttributeId
```
Integer workflowRunAttributeId
```
    - tag
```
String tag
```
    - value
```
String value
```
    - unit
```
String unit
```
    - workflowRunId
```
WorkflowRun workflowRunId
```
- Class io.seqware.webservice.generated.model.WorkflowRunParam extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - workflowRunParamId
```
Integer workflowRunParamId
```
    - type
```
String type
```
    - key
```
String key
```
    - parentProcessingAccession
```
Integer parentProcessingAccession
```
    - value
```
String value
```
    - workflowRunId
```
WorkflowRun workflowRunId
```
Package net.sourceforge.seqware.common.business
- Class net.sourceforge.seqware.common.business.UploadFile extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - typeNode
```
String typeNode
```
    - id
```
Integer id
```
    - nameNode
```
String nameNode
```
    - fileTypeId
```
Integer fileTypeId
```
    - fileType
```
FileType fileType
```
    - file
```
org.springframework.web.multipart.MultipartFile file
```
    - fileURL
```
String fileURL
```
    - strStartURL
```
String strStartURL
```
    - useURL
```
Boolean useURL
```
    - folderStore
```
String folderStore
```
Package net.sourceforge.seqware.common.err
- Class net.sourceforge.seqware.common.err.NotFoundException extends RuntimeException implements Serializable
  
  serialVersionUID:
  
  1L
Package net.sourceforge.seqware.common.model
- Class net.sourceforge.seqware.common.model.Expense extends PermissionsAware implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - expenseId
```
Integer expenseId
```
    - invoice
```
Invoice invoice
```
    - workflowRun
```
WorkflowRun workflowRun
```
    - agent
```
String agent
```
    - expenseType
```
String expenseType
```
    - description
```
String description
```
    - pricePerUnit
```
Double pricePerUnit
```
    - totalUnits
```
Double totalUnits
```
    - totalPrice
```
Double totalPrice
```
    - addedSurcharge
```
Double addedSurcharge
```
    - swAccession
```
Integer swAccession
```
    - finishedTimestamp
```
Date finishedTimestamp
```
- Class net.sourceforge.seqware.common.model.Experiment extends PermissionsAware implements Serializable
  
  serialVersionUID:
  
  2L
  - Serialized Fields
    - experimentId
```
Integer experimentId
```
    - swAccession
```
Integer swAccession
```
    - title
```
String title
```
    - name
```
String name
```
    - description
```
String description
```
    - alias
```
String alias
```
    - accession
```
String accession
```
    - status
```
String status
```
    - centerName
```
String centerName
```
    - sequenceSpace
```
String sequenceSpace
```
    - baseCaller
```
String baseCaller
```
    - qualityScorer
```
String qualityScorer
```
    - qualityNumberOfLevels
```
Integer qualityNumberOfLevels
```
    - qualityMultiplier
```
Integer qualityMultiplier
```
    - qualityType
```
String qualityType
```
    - expectedNumberRuns
```
Integer expectedNumberRuns
```
    - expectedNumberSpots
```
Long expectedNumberSpots
```
    - expectedNumberReads
```
Long expectedNumberReads
```
    - owner
```
Registration owner
```
    - study
```
Study study
```
    - experimentLibraryDesign
```
ExperimentLibraryDesign experimentLibraryDesign
```
    - experimentSpotDesign
```
ExperimentSpotDesign experimentSpotDesign
```
    - platform
```
Platform platform
```
    - expLibDesignName
```
String expLibDesignName
```
    - expLibDesignDesc
```
String expLibDesignDesc
```
    - expLibDesignProtocol
```
String expLibDesignProtocol
```
    - expLibDesignStrategy
```
Integer expLibDesignStrategy
```
    - expLibDesignSource
```
Integer expLibDesignSource
```
    - expLibDesignSelection
```
Integer expLibDesignSelection
```
    - spotDesignReadSpec
```
String spotDesignReadSpec
```
    - expSpotDesignTagSpec
```
String expSpotDesignTagSpec
```
    - expSpotDesignAdapterSpec
```
String expSpotDesignAdapterSpec
```
    - expSpotDesignReadsPerSpot
```
Integer expSpotDesignReadsPerSpot
```
    - processings
```
Set<E> processings
```
    - experimentAttributes
```
Set<E> experimentAttributes
```
    - platformInt
```
Integer platformInt
```
    - samples
```
SortedSet<E> samples
```
    - createTimestamp
```
Date createTimestamp
```
    - updateTimestamp
```
Date updateTimestamp
```
    - isSelected
```
Boolean isSelected
```
    - isHasFile
```
Boolean isHasFile
```
    - strExpectedNumberRuns
```
String strExpectedNumberRuns
```
    - strExpectedNumberReads
```
String strExpectedNumberReads
```
- Class net.sourceforge.seqware.common.model.ExperimentAttribute extends Attribute<Experiment,ExperimentAttribute> implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - experimentAttributeId
```
int experimentAttributeId
```
    - experiment
```
Experiment experiment
```
    - tag
```
String tag
```
    - value
```
String value
```
    - units
```
String units
```
- Class net.sourceforge.seqware.common.model.ExperimentLibraryDesign extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - experimentLibraryDesignId
```
Integer experimentLibraryDesignId
```
    - name
```
String name
```
    - description
```
String description
```
    - constructionProtocol
```
String constructionProtocol
```
    - strategy
```
LibraryStrategy strategy
```
    - source
```
LibrarySource source
```
    - selection
```
LibrarySelection selection
```
    - layout
```
String layout
```
    - pairedOrientation
```
String pairedOrientation
```
    - nominalLength
```
Integer nominalLength
```
    - nominalSdev
```
Long nominalSdev
```
- Class net.sourceforge.seqware.common.model.ExperimentSpotDesign extends Object implements Serializable
  
  serialVersionUID:
  
  173283927487293893L
  - Serialized Fields
    - experimentSpotDesignId
```
Integer experimentSpotDesignId
```
    - decodeMethod
```
Integer decodeMethod
```
    - readsPerSpot
```
Integer readsPerSpot
```
    - readSpec
```
String readSpec
```
    - tagSpec
```
String tagSpec
```
    - adapterSpec
```
String adapterSpec
```
    - readSpecs
```
SortedSet<E> readSpecs
```
- Class net.sourceforge.seqware.common.model.ExperimentSpotDesignReadSpec extends Object implements Serializable
  
  serialVersionUID:
  
  17328392935613893L
  - Serialized Fields
    - experimentSpotDesignReadSpecId
```
Integer experimentSpotDesignReadSpecId
```
    - experimentSpotDesign
```
ExperimentSpotDesign experimentSpotDesign
```
    - readIndex
```
Integer readIndex
```
    - readLabel
```
String readLabel
```
    - readClass
```
String readClass
```
    - readType
```
String readType
```
    - baseCoord
```
Integer baseCoord
```
    - cycleCoord
```
Integer cycleCoord
```
    - length
```
Integer length
```
    - expectedBaseCall
```
String expectedBaseCall
```
- Class net.sourceforge.seqware.common.model.File extends PermissionsAware implements Serializable
  
  serialVersionUID:
  
  3681322115923390568L
  - Serialized Fields
    - fileId
```
Integer fileId
```
    - filePath
```
String filePath
```
    - type
```
String type
```
    - metaType
```
String metaType
```
    - description
```
String description
```
    - swAccession
```
Integer swAccession
```
    - isSelected
```
Boolean isSelected
```
    - owner
```
Registration owner
```
    - url
```
String url
```
    - urlLabel
```
String urlLabel
```
    - md5sum
```
String md5sum
```
    - fileType
```
FileType fileType
```
    - processings
```
Set<E> processings
```
    - fileAttributes
```
Set<E> fileAttributes
```
    - size
```
Long size
```
    - skip
```
Boolean skip
```
- Class net.sourceforge.seqware.common.model.FileAttribute extends Attribute<File,FileAttribute> implements Serializable
  - Serialized Fields
    - fileAttributeId
```
Integer fileAttributeId
```
    - file
```
File file
```
    - tag
```
String tag
```
    - value
```
String value
```
    - unit
```
String unit
```
- Class net.sourceforge.seqware.common.model.FileReportRow extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - rowId
```
Integer rowId
```
    - study
```
Study study
```
    - experiment
```
Experiment experiment
```
    - sample
```
Sample sample
```
    - childSample
```
Sample childSample
```
    - ius
```
IUS ius
```
    - lane
```
Lane lane
```
    - processing
```
Processing processing
```
    - file
```
File file
```
- Class net.sourceforge.seqware.common.model.FileType extends Object implements Serializable
  
  serialVersionUID:
  
  2681345328115990568L
  - Serialized Fields
    - fileTypeId
```
Integer fileTypeId
```
    - displayName
```
String displayName
```
    - metaType
```
String metaType
```
    - extension
```
String extension
```
- Class net.sourceforge.seqware.common.model.Invoice extends PermissionsAware implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - invoiceId
```
Integer invoiceId
```
    - owner
```
Registration owner
```
    - startDate
```
Date startDate
```
    - endDate
```
Date endDate
```
    - state
```
InvoiceState state
```
    - finalized
```
boolean finalized
```
    - fullyPaid
```
boolean fullyPaid
```
    - paidAmount
```
Double paidAmount
```
    - daysUntilDue
```
Integer daysUntilDue
```
    - externalId
```
String externalId
```
    - clientNotes
```
String clientNotes
```
    - notes
```
String notes
```
    - swAccession
```
Integer swAccession
```
    - createTimestamp
```
Date createTimestamp
```
    - expenses
```
Set<E> expenses
```
- Class net.sourceforge.seqware.common.model.IUS extends PermissionsAware implements Serializable
  
  serialVersionUID:
  
  3472028115923390568L
  - Serialized Fields
    - iusId
```
Integer iusId
```
    - lane
```
Lane lane
```
    - owner
```
Registration owner
```
    - sample
```
Sample sample
```
    - name
```
String name
```
    - alias
```
String alias
```
    - description
```
String description
```
    - tag
```
String tag
```
    - swAccession
```
Integer swAccession
```
    - createTimestamp
```
Date createTimestamp
```
    - updateTimestamp
```
Date updateTimestamp
```
    - processings
```
Set<E> processings
```
    - workflowRuns
```
Set<E> workflowRuns
```
    - iusAttributes
```
Set<E> iusAttributes
```
    - skip
```
Boolean skip
```
    - isHasFile
```
Boolean isHasFile
```
    - isSelected
```
Boolean isSelected
```
- Class net.sourceforge.seqware.common.model.IUSAttribute extends Attribute<IUS,IUSAttribute> implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - iusAttributeId
```
Integer iusAttributeId
```
    - ius
```
IUS ius
```
    - tag
```
String tag
```
    - value
```
String value
```
    - units
```
String units
```
- Class net.sourceforge.seqware.common.model.Lane extends PermissionsAware implements Serializable
  
  serialVersionUID:
  
  5681328115923390568L
  - Serialized Fields
    - laneId
```
Integer laneId
```
    - laneIndex
```
Integer laneIndex
```
    - sequencerRun
```
SequencerRun sequencerRun
```
    - sample
```
Sample sample
```
    - name
```
String name
```
    - cycleDescriptor
```
String cycleDescriptor
```
    - sampleCode
```
String sampleCode
```
    - description
```
String description
```
    - organism
```
String organism
```
    - sampleType
```
String sampleType
```
    - tags
```
String tags
```
    - regions
```
String regions
```
    - skipTxt
```
String skipTxt
```
    - skip
```
Boolean skip
```
    - owner
```
Registration owner
```
    - createTimestamp
```
Date createTimestamp
```
    - updateTimestamp
```
Date updateTimestamp
```
    - processings
```
Set<E> processings
```
    - swAccession
```
Integer swAccession
```
    - ius
```
SortedSet<E> ius
```
    - workflowRuns
```
Set<E> workflowRuns
```
    - laneAttributes
```
Set<E> laneAttributes
```
    - isSelected
```
Boolean isSelected
```
    - isHasFile
```
Boolean isHasFile
```
    - studyType
```
StudyType studyType
```
    - libraryStrategy
```
LibraryStrategy libraryStrategy
```
    - librarySelection
```
LibrarySelection librarySelection
```
    - librarySource
```
LibrarySource librarySource
```
- Class net.sourceforge.seqware.common.model.LaneAttribute extends Attribute<Lane,LaneAttribute> implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - laneAttributeId
```
Integer laneAttributeId
```
    - lane
```
Lane lane
```
    - tag
```
String tag
```
    - value
```
String value
```
    - units
```
String units
```
- Class net.sourceforge.seqware.common.model.LibrarySelection extends Object implements Serializable
  
  serialVersionUID:
  
  3611345318915990568L
  - Serialized Fields
    - librarySelectionId
```
Integer librarySelectionId
```
    - name
```
String name
```
    - description
```
String description
```
- Class net.sourceforge.seqware.common.model.LibrarySource extends Object implements Serializable
  
  serialVersionUID:
  
  3681345318915990568L
  - Serialized Fields
    - librarySourceId
```
Integer librarySourceId
```
    - name
```
String name
```
    - description
```
String description
```
- Class net.sourceforge.seqware.common.model.LibraryStrategy extends Object implements Serializable
  
  serialVersionUID:
  
  3681345328915990568L
  - Serialized Fields
    - libraryStrategyId
```
Integer libraryStrategyId
```
    - name
```
String name
```
    - description
```
String description
```
- Class net.sourceforge.seqware.common.model.Organism extends Object implements Serializable
  
  serialVersionUID:
  
  3472028192033390568L
  - Serialized Fields
    - organismId
```
Integer organismId
```
    - name
```
String name
```
    - code
```
String code
```
    - accession
```
String accession
```
    - ncbiTaxId
```
Integer ncbiTaxId
```
- Class net.sourceforge.seqware.common.model.Platform extends Object implements Serializable
  
  serialVersionUID:
  
  3681345328115990568L
  - Serialized Fields
    - platformId
```
Integer platformId
```
    - name
```
String name
```
    - description
```
String description
```
    - instrumentModel
```
String instrumentModel
```
- Class net.sourceforge.seqware.common.model.Processing extends PermissionsAware implements Serializable
  
  serialVersionUID:
  
  4681328115923390568L
  - Serialized Fields
    - processingId
```
Integer processingId
```
    - filePath
```
String filePath
```
    - studies
```
Set<E> studies
```
    - samples
```
Set<E> samples
```
    - ius
```
Set<E> ius
```
    - lanes
```
Set<E> lanes
```
    - files
```
Set<E> files
```
    - sequencerRuns
```
Set<E> sequencerRuns
```
    - experiments
```
Set<E> experiments
```
    - children
```
Set<E> children
```
    - parents
```
Set<E> parents
```
    - processingAttributes
```
Set<E> processingAttributes
```
    - workflowRunByAncestorWorkflowRunId
```
WorkflowRun workflowRunByAncestorWorkflowRunId
```
    - algorithm
```
String algorithm
```
    - status
```
ProcessingStatus status
```
    - exitStatus
```
Integer exitStatus
```
    - processExitStatus
```
Integer processExitStatus
```
    - description
```
String description
```
    - url
```
String url
```
    - urlLabel
```
String urlLabel
```
    - version
```
String version
```
    - taskGroup
```
boolean taskGroup
```
    - createTimestamp
```
Date createTimestamp
```
    - updateTimestamp
```
Date updateTimestamp
```
    - runStartTimestamp
```
Date runStartTimestamp
```
    - runStopTimestamp
```
Date runStopTimestamp
```
    - swAccession
```
Integer swAccession
```
    - workflowRunId
```
Integer workflowRunId
```
    - owner
```
Registration owner
```
    - workflowRun
```
WorkflowRun workflowRun
```
    - isSelected
```
Boolean isSelected
```
    - isHasFile
```
Boolean isHasFile
```
    - parameters
```
String parameters
```
    - stdout
```
String stdout
```
    - stderr
```
String stderr
```
- Class net.sourceforge.seqware.common.model.ProcessingAttribute extends Attribute<Processing,ProcessingAttribute> implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - processingAttributeId
```
int processingAttributeId
```
    - processing
```
Processing processing
```
    - tag
```
String tag
```
    - value
```
String value
```
    - units
```
String units
```
- Class net.sourceforge.seqware.common.model.ProcessingExperiments extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - processingExperimentsId
```
int processingExperimentsId
```
    - processing
```
Processing processing
```
    - experiment
```
Experiment experiment
```
    - description
```
String description
```
    - label
```
String label
```
    - url
```
String url
```
    - swAccession
```
Integer swAccession
```
- Class net.sourceforge.seqware.common.model.ProcessingIus extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - processingIusId
```
int processingIusId
```
    - ius
```
IUS ius
```
    - processing
```
Processing processing
```
    - description
```
String description
```
    - label
```
String label
```
    - url
```
String url
```
    - swAccession
```
Integer swAccession
```
- Class net.sourceforge.seqware.common.model.ProcessingLanes extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - processingLanesId
```
int processingLanesId
```
    - processing
```
Processing processing
```
    - lane
```
Lane lane
```
    - description
```
String description
```
    - label
```
String label
```
    - url
```
String url
```
    - swAccession
```
Integer swAccession
```
- Class net.sourceforge.seqware.common.model.ProcessingRelationship extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - processingRelationshipId
```
int processingRelationshipId
```
    - processingByParentId
```
Processing processingByParentId
```
    - processingByChildId
```
Processing processingByChildId
```
    - relationship
```
String relationship
```
- Class net.sourceforge.seqware.common.model.ProcessingSamples extends Object implements Serializable
  
  serialVersionUID:
  
  -1L
  - Serialized Fields
    - processingSamplesId
```
int processingSamplesId
```
    - processing
```
Processing processing
```
    - sample
```
Sample sample
```
    - description
```
String description
```
    - label
```
String label
```
    - url
```
String url
```
    - swAccession
```
Integer swAccession
```
- Class net.sourceforge.seqware.common.model.ProcessingSequencerRuns extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - processingSequencerRunsId
```
int processingSequencerRunsId
```
    - processing
```
Processing processing
```
    - sequencerRun
```
SequencerRun sequencerRun
```
    - description
```
String description
```
    - label
```
String label
```
    - url
```
String url
```
    - swAccession
```
Integer swAccession
```
- Class net.sourceforge.seqware.common.model.ProcessingStudies extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - processingStudiesId
```
int processingStudiesId
```
    - processing
```
Processing processing
```
    - study
```
Study study
```
    - description
```
String description
```
    - label
```
String label
```
    - url
```
String url
```
    - swAccession
```
Integer swAccession
```
- Class net.sourceforge.seqware.common.model.Registration extends PermissionsAware implements Serializable
  
  serialVersionUID:
  
  -6290711918776330816L
  - Serialized Fields
    - registrationId
```
Integer registrationId
```
    - emailAddress
```
String emailAddress
```
    - password
```
String password
```
    - passwordHint
```
String passwordHint
```
    - firstName
```
String firstName
```
    - lastName
```
String lastName
```
    - institution
```
String institution
```
    - limsAdmin
```
boolean limsAdmin
```
    - payee
```
boolean payee
```
    - createTimestamp
```
Date createTimestamp
```
    - updateTimestamp
```
Date updateTimestamp
```
    - invitationCode
```
String invitationCode
```
    - joinUsersMailingList
```
boolean joinUsersMailingList
```
    - joinDevelopersMailingList
```
boolean joinDevelopersMailingList
```
    - logger
```
org.slf4j.Logger logger
```
- Class net.sourceforge.seqware.common.model.RegistrationDTO extends Registration implements Serializable
  
  serialVersionUID:
  
  8465486434105955512L
  - Serialized Fields
    - confirmEmailAddress
```
String confirmEmailAddress
```
    - confirmPassword
```
String confirmPassword
```
    - domainObject
```
Registration domainObject
```
- Class net.sourceforge.seqware.common.model.Sample extends PermissionsAware implements Serializable
  
  serialVersionUID:
  
  3681367228115990568L
  - Serialized Fields
    - sampleId
```
Integer sampleId
```
    - experiment
```
Experiment experiment
```
    - owner
```
Registration owner
```
    - anonymizedName
```
String anonymizedName
```
    - individualName
```
String individualName
```
    - swAccession
```
Integer swAccession
```
    - name
```
String name
```
    - title
```
String title
```
    - alias
```
String alias
```
    - description
```
String description
```
    - type
```
String type
```
    - organism
```
Organism organism
```
    - tags
```
String tags
```
    - adapters
```
String adapters
```
    - regions
```
String regions
```
    - expectedNumRuns
```
Integer expectedNumRuns
```
    - expectedNumSpots
```
Integer expectedNumSpots
```
    - expectedNumReads
```
Integer expectedNumReads
```
    - skip
```
Boolean skip
```
    - createTimestamp
```
Date createTimestamp
```
    - updateTimestamp
```
Date updateTimestamp
```
    - isSelected
```
Boolean isSelected
```
    - isHasFile
```
Boolean isHasFile
```
    - countFile
```
Integer countFile
```
    - strExpectedNumRuns
```
String strExpectedNumRuns
```
    - strExpectedNumReads
```
String strExpectedNumReads
```
    - lanes
```
SortedSet<E> lanes
```
    - ius
```
SortedSet<E> ius
```
    - processings
```
Set<E> processings
```
    - parents
```
Set<E> parents
```
    - children
```
Set<E> children
```
    - sampleAttributes
```
Set<E> sampleAttributes
```
    - organismId
```
Integer organismId
```
- Class net.sourceforge.seqware.common.model.SampleAttribute extends Attribute<Sample,SampleAttribute> implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - sampleAttributeId
```
int sampleAttributeId
```
    - sample
```
Sample sample
```
    - tag
```
String tag
```
    - value
```
String value
```
    - units
```
String units
```
- Class net.sourceforge.seqware.common.model.SequencerRun extends PermissionsAware implements Serializable
  
  serialVersionUID:
  
  3681328115923390568L
  - Serialized Fields
    - sequencerRunId
```
Integer sequencerRunId
```
    - owner
```
Registration owner
```
    - platform
```
Platform platform
```
    - name
```
String name
```
    - description
```
String description
```
    - instrumentName
```
String instrumentName
```
    - cycleDescriptor
```
String cycleDescriptor
```
    - cycleSequence
```
String cycleSequence
```
    - cycleCount
```
Integer cycleCount
```
    - status
```
SequencerRunStatus status
```
    - cycles
```
String cycles
```
    - refLane
```
Integer refLane
```
    - filePath
```
String filePath
```
    - process
```
boolean process
```
    - pairedEnd
```
Boolean pairedEnd
```
    - pairedFilePath
```
String pairedFilePath
```
    - useIparIntensities
```
Boolean useIparIntensities
```
    - colorMatrix
```
String colorMatrix
```
    - colorMatrixCode
```
String colorMatrixCode
```
    - slideOneLaneCount
```
Integer slideOneLaneCount
```
    - slideTwoLaneCount
```
Integer slideTwoLaneCount
```
    - slideOneFilePath
```
String slideOneFilePath
```
    - slideTwoFilePath
```
String slideTwoFilePath
```
    - flowSequence
```
String flowSequence
```
    - flowCount
```
Integer flowCount
```
    - runCenter
```
String runCenter
```
    - createTimestamp
```
Date createTimestamp
```
    - updateTimestamp
```
Date updateTimestamp
```
    - swAccession
```
Integer swAccession
```
    - platformInt
```
int platformInt
```
    - processingCount
```
Integer processingCount
```
    - processedCount
```
Integer processedCount
```
    - errorCount
```
Integer errorCount
```
    - skip
```
Boolean skip
```
    - html
```
String html
```
    - sequencerRunAttributes
```
Set<E> sequencerRunAttributes
```
    - processings
```
Set<E> processings
```
    - lanes
```
SortedSet<E> lanes
```
    - strRefLane
```
String strRefLane
```
- Class net.sourceforge.seqware.common.model.SequencerRunAttribute extends Attribute<SequencerRunWizardDTO,SequencerRunAttribute> implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - sequencerRunAttributeId
```
Integer sequencerRunAttributeId
```
    - sequencerRun
```
SequencerRunWizardDTO sequencerRun
```
    - tag
```
String tag
```
    - value
```
String value
```
    - units
```
String units
```
- Class net.sourceforge.seqware.common.model.SequencerRunDTO extends Object implements Serializable
  
  serialVersionUID:
  
  3681328115923390568L
  - Serialized Fields
    - sequencerRunId
```
Integer sequencerRunId
```
    - owner
```
Registration owner
```
    - platform
```
Platform platform
```
    - name
```
String name
```
    - description
```
String description
```
    - instrumentName
```
String instrumentName
```
    - cycleDescriptor
```
String cycleDescriptor
```
    - cycleSequence
```
String cycleSequence
```
    - cycleCount
```
Integer cycleCount
```
    - status
```
String status
```
    - cycles
```
String cycles
```
    - refLane
```
Integer refLane
```
    - filePath
```
String filePath
```
    - readyToProcess
```
String readyToProcess
```
    - pairedEnd
```
Boolean pairedEnd
```
    - pairedFilePath
```
String pairedFilePath
```
    - useIparIntensities
```
Boolean useIparIntensities
```
    - colorMatrix
```
String colorMatrix
```
    - colorMatrixCode
```
String colorMatrixCode
```
    - slideOneLaneCount
```
Integer slideOneLaneCount
```
    - slideTwoLaneCount
```
Integer slideTwoLaneCount
```
    - slideOneFilePath
```
String slideOneFilePath
```
    - slideTwoFilePath
```
String slideTwoFilePath
```
    - flowSequence
```
String flowSequence
```
    - flowCount
```
Integer flowCount
```
    - runCenter
```
String runCenter
```
    - createTimestamp
```
Date createTimestamp
```
    - updateTimestamp
```
Date updateTimestamp
```
    - processings
```
SortedSet<E> processings
```
    - lanes
```
SortedSet<E> lanes
```
    - lane1
```
Lane lane1
```
    - lane2
```
Lane lane2
```
    - lane3
```
Lane lane3
```
    - lane4
```
Lane lane4
```
    - lane5
```
Lane lane5
```
    - lane6
```
Lane lane6
```
    - lane7
```
Lane lane7
```
    - lane8
```
Lane lane8
```
- Class net.sourceforge.seqware.common.model.SequencerRunWizardDTO extends SequencerRun implements Serializable
  
  serialVersionUID:
  
  8465486434105955512L
  - Serialized Fields
    - domainObject
```
Registration domainObject
```
    - laneCount
```
int laneCount
```
    - strLaneCount
```
String strLaneCount
```
- Class net.sourceforge.seqware.common.model.ShareStudy extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - shareStudyId
```
Integer shareStudyId
```
    - studyId
```
Integer studyId
```
    - registration
```
Registration registration
```
    - active
```
Boolean active
```
    - swAccession
```
Integer swAccession
```
    - createTimestamp
```
Date createTimestamp
```
    - updateTimestamp
```
Date updateTimestamp
```
- Class net.sourceforge.seqware.common.model.ShareWorkflowRun extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - shareWorkflowRunId
```
Integer shareWorkflowRunId
```
    - workflowRunId
```
Integer workflowRunId
```
    - registration
```
Registration registration
```
    - active
```
Boolean active
```
    - swAccession
```
Integer swAccession
```
    - createTimestamp
```
Date createTimestamp
```
    - updateTimestamp
```
Date updateTimestamp
```
- Class net.sourceforge.seqware.common.model.Study extends PermissionsAware implements Serializable
  
  serialVersionUID:
  
  2L
  - Serialized Fields
    - studyId
```
Integer studyId
```
    - swAccession
```
Integer swAccession
```
    - title
```
String title
```
    - description
```
String description
```
    - alias
```
String alias
```
    - accession
```
String accession
```
    - status
```
String status
```
    - abstractStr
```
String abstractStr
```
    - newType
```
String newType
```
    - centerName
```
String centerName
```
    - centerProjectName
```
String centerProjectName
```
    - projectId
```
Integer projectId
```
    - createTimestamp
```
Date createTimestamp
```
    - updateTimestamp
```
Date updateTimestamp
```
    - isSelected
```
Boolean isSelected
```
    - isHasFile
```
Boolean isHasFile
```
    - html
```
String html
```
    - owner
```
Registration owner
```
    - existingType
```
StudyType existingType
```
    - existingTypeInt
```
Integer existingTypeInt
```
    - experiments
```
SortedSet<E> experiments
```
    - sharedStudies
```
SortedSet<E> sharedStudies
```
    - processings
```
Set<E> processings
```
    - studyAttributes
```
Set<E> studyAttributes
```
- Class net.sourceforge.seqware.common.model.StudyAttribute extends Attribute<Study,StudyAttribute> implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - studyAttributeId
```
int studyAttributeId
```
    - study
```
Study study
```
    - tag
```
String tag
```
    - value
```
String value
```
    - units
```
String units
```
- Class net.sourceforge.seqware.common.model.StudyType extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - studyTypeId
```
Integer studyTypeId
```
    - name
```
String name
```
    - description
```
String description
```
- Class net.sourceforge.seqware.common.model.UploadSequence extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - sample
```
Sample sample
```
    - sampleId
```
Integer sampleId
```
    - pathToFirstFile
```
String pathToFirstFile
```
    - pathToSecondFile
```
String pathToSecondFile
```
    - type
```
String type
```
    - fileTypeId
```
Integer fileTypeId
```
    - fileType
```
FileType fileType
```
    - fileOne
```
org.springframework.web.multipart.MultipartFile fileOne
```
    - fileTwo
```
org.springframework.web.multipart.MultipartFile fileTwo
```
    - fileURL
```
String fileURL
```
    - fileTwoURL
```
String fileTwoURL
```
    - strStartURL
```
String strStartURL
```
    - useOneURL
```
Boolean useOneURL
```
    - useTwoURL
```
Boolean useTwoURL
```
    - end
```
String end
```
    - folderStore
```
String folderStore
```
- Class net.sourceforge.seqware.common.model.Workflow extends PermissionsAware implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - workflowId
```
Integer workflowId
```
    - swAccession
```
Integer swAccession
```
    - name
```
String name
```
    - description
```
String description
```
    - inputAlgorithm
```
String inputAlgorithm
```
    - version
```
String version
```
    - seqwareVersion
```
String seqwareVersion
```
    - baseIniFile
```
String baseIniFile
```
    - cwd
```
String cwd
```
    - command
```
String command
```
    - template
```
String template
```
    - host
```
String host
```
      Deprecated. this does not seem to be in use and probably should not be
    - username
```
String username
```
    - permanentBundleLocation
```
String permanentBundleLocation
```
    - workflowClass
```
String workflowClass
```
    - workflowType
```
String workflowType
```
    - workflowEngine
```
String workflowEngine
```
    - createTimestamp
```
Date createTimestamp
```
    - updateTimestamp
```
Date updateTimestamp
```
    - isPrivate
```
boolean isPrivate
```
    - isPublic
```
boolean isPublic
```
    - owner
```
Registration owner
```
    - workflowRuns
```
SortedSet<E> workflowRuns
```
    - workflowParams
```
SortedSet<E> workflowParams
```
    - workflowAttributes
```
Set<E> workflowAttributes
```
- Class net.sourceforge.seqware.common.model.WorkflowAttribute extends Attribute<Workflow,WorkflowAttribute> implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - workflowAttributeId
```
Integer workflowAttributeId
```
    - workflow
```
Workflow workflow
```
    - tag
```
String tag
```
    - value
```
String value
```
    - unit
```
String unit
```
- Class net.sourceforge.seqware.common.model.WorkflowParam extends PermissionsAware implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - workflowParamId
```
Integer workflowParamId
```
    - workflow
```
Workflow workflow
```
    - type
```
String type
```
    - key
```
String key
```
    - defaultValue
```
String defaultValue
```
    - display
```
Boolean display
```
    - fileMetaType
```
String fileMetaType
```
    - displayName
```
String displayName
```
    - value
```
String value
```
    - displayValue
```
String displayValue
```
    - values
```
SortedSet<E> values
```
    - sample
```
Sample sample
```
    - files
```
List<E> files
```
- Class net.sourceforge.seqware.common.model.WorkflowParamValue extends PermissionsAware implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - workflowParamValueId
```
Integer workflowParamValueId
```
    - workflowParamId
```
Integer workflowParamId
```
    - displayName
```
String displayName
```
    - value
```
String value
```
    - workflowParam
```
WorkflowParam workflowParam
```
    - logger
```
org.slf4j.Logger logger
```
- Class net.sourceforge.seqware.common.model.WorkflowRun extends PermissionsAware implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - workflowRunId
```
Integer workflowRunId
```
    - workflow
```
Workflow workflow
```
    - swAccession
```
Integer swAccession
```
    - name
```
String name
```
    - createTimestamp
```
Date createTimestamp
```
    - updateTimestamp
```
Date updateTimestamp
```
    - isSelected
```
Boolean isSelected
```
    - owner
```
Registration owner
```
    - processings
```
SortedSet<E> processings
```
    - offspringProcessings
```
SortedSet<E> offspringProcessings
```
    - samples
```
SortedSet<E> samples
```
    - ius
```
SortedSet<E> ius
```
    - lanes
```
SortedSet<E> lanes
```
    - sharedWorkflowRuns
```
SortedSet<E> sharedWorkflowRuns
```
    - workflowRunParams
```
SortedSet<E> workflowRunParams
```
    - html
```
String html
```
    - isHasFile
```
Boolean isHasFile
```
    - status
```
WorkflowRunStatus status
```
    - statusCmd
```
String statusCmd
```
    - seqwareRevision
```
String seqwareRevision
```
    - host
```
String host
```
    - currentWorkingDir
```
String currentWorkingDir
```
    - userName
```
String userName
```
    - command
```
String command
```
    - template
```
String template
```
    - dax
```
String dax
```
    - iniFile
```
String iniFile
```
    - stdErr
```
String stdErr
```
    - stdOut
```
String stdOut
```
    - workflowRunAttributes
```
Set<E> workflowRunAttributes
```
    - workflowEngine
```
String workflowEngine
```
    - inputFileAccessions
```
Set<E> inputFileAccessions
```
    - workflowAccession
```
Integer workflowAccession
```
    - ownerUserName
```
String ownerUserName
```
- Class net.sourceforge.seqware.common.model.WorkflowRunAttribute extends Attribute<WorkflowRun,WorkflowRunAttribute> implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - workflowRunAttributeId
```
Integer workflowRunAttributeId
```
    - workflowRun
```
WorkflowRun workflowRun
```
    - tag
```
String tag
```
    - value
```
String value
```
    - unit
```
String unit
```
- Class net.sourceforge.seqware.common.model.WorkflowRunParam extends PermissionsAware implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - WorkflowRunParamId
```
Integer WorkflowRunParamId
```
    - type
```
String type
```
    - key
```
String key
```
    - value
```
String value
```
    - parentProcessingAccession
```
Integer parentProcessingAccession
```
    - workflowRun
```
WorkflowRun workflowRun
```
    - logger
```
org.slf4j.Logger logger
```
Package net.sourceforge.seqware.common.module
- Class net.sourceforge.seqware.common.module.ReturnValue extends Object implements Serializable
  - Serialized Fields
    - stdout
```
String stdout
```
    - stderr
```
String stderr
```
    - exitStatus
```
int exitStatus
```
    - processExitStatus
```
int processExitStatus
```
    - returnValue
```
int returnValue
```
    - algorithm
```
String algorithm
```
    - parameters
```
String parameters
```
    - description
```
String description
```
    - version
```
String version
```
    - url
```
String url
```
    - urlLabel
```
String urlLabel
```
    - runStartTstmp
```
Date runStartTstmp
```
    - runStopTstmp
```
Date runStopTstmp
```
    - files
```
ArrayList<E> files
```
    - attributes
```
Map<K,V> attributes
```
Package net.sourceforge.seqware.common.util
- Class net.sourceforge.seqware.common.util.ExitException extends SecurityException implements Serializable
  - Serialized Fields
    - status
```
int status
```
- Class net.sourceforge.seqware.common.util.Str.UnsafeName extends RuntimeException implements Serializable
Package net.sourceforge.seqware.pipeline.plugins.filelinker
- Class net.sourceforge.seqware.pipeline.plugins.filelinker.FileLinkerLineException extends RuntimeException implements Serializable
  
  serialVersionUID:
  
  1L
Package net.sourceforge.seqware.pipeline.runner
- Class net.sourceforge.seqware.pipeline.runner.PluginRunner.ExitException extends RuntimeException implements Serializable
  - Serialized Fields
    - exitCode
```
int exitCode
```
Package net.sourceforge.solexatools.webapp.controller
- Class net.sourceforge.solexatools.webapp.controller.SequencerRunReportTableController extends Object implements Serializable
  
  serialVersionUID:
  
  1L
  - Serialized Fields
    - orderFieldSeqRun
```
String orderFieldSeqRun
```
    - orderTypeSeqRun
```
String orderTypeSeqRun
```
    - orderFieldFile
```
String orderFieldFile
```
    - orderTypeFile
```
String orderTypeFile
```
    - isProgressDownloaded
```
boolean isProgressDownloaded
```
    - isFileDownloaded
```
boolean isFileDownloaded
```
    - sequencerRunService
```
SequencerRunService sequencerRunService
```
    - sampleReportService
```
SampleReportService sampleReportService
```
    - fileReportService
```
FileReportService fileReportService
```
    - workflows
```
List<E> workflows
```

Serialized Form

Package io.seqware.webservice.generated.model

Class io.seqware.webservice.generated.model.Expense extends Object implements Serializable

Serialized Fields

expenseId

workflowRunId

agent

expenseType

description

pricePerUnit

totalUnits

totalPrice

addedSurcharge

swAccession

expenseFinishedTstmp

invoiceId

expenseAttributeCollection

Class io.seqware.webservice.generated.model.ExpenseAttribute extends Object implements Serializable

Serialized Fields

expenseAttributeId

tag

value

units

expenseId

Class io.seqware.webservice.generated.model.Experiment extends Object implements Serializable

Serialized Fields

experimentId

name

title

description

alias

accession

status

centerName

sequenceSpace

baseCaller

qualityScorer

qualityNumberOfLevels

qualityMultiplier

qualityType

expectedNumberRuns

expectedNumberSpots

expectedNumberReads

swAccession

createTstmp

updateTstmp

experimentAttributeCollection

studyId

ownerId

platformId

experimentSpotDesignId

experimentLibraryDesignId

processingExperimentsCollection

sampleCollection

experimentLinkCollection

Class io.seqware.webservice.generated.model.ExperimentAttribute extends Object implements Serializable

Serialized Fields

experimentAttributeId

tag

value

units

experimentId

Class io.seqware.webservice.generated.model.ExperimentLibraryDesign extends Object implements Serializable

Serialized Fields

experimentLibraryDesignId

name

description

constructionProtocol

layout

pairedOrientation

nominalLength

nominalSdev

experimentCollection

strategy

source

selection

Class io.seqware.webservice.generated.model.ExperimentLink extends Object implements Serializable

Serialized Fields

experimentLinkId

label