Constructor Detail

• Sample

  public Sample()

• Sample

  public Sample(Integer sampleId)

• Sample

  public Sample(Integer sampleId,
        Date createTstmp)

Method Detail

• getSampleId

  public Integer getSampleId()

• setSampleId

  public void setSampleId(Integer sampleId)

• getName

  public String getName()

• setName

  public void setName(String name)

• getTitle

  public String getTitle()

• setTitle

  public void setTitle(String title)

• getAlias

  public String getAlias()

• setAlias

  public void setAlias(String alias)

• getType

  public String getType()

• setType

  public void setType(String type)

• getScientificName

  public String getScientificName()

• setScientificName

  public void setScientificName(String scientificName)

• getCommonName

  public String getCommonName()

• setCommonName

  public void setCommonName(String commonName)

• getAnonymizedName

  public String getAnonymizedName()

• setAnonymizedName

  public void setAnonymizedName(String anonymizedName)

• getIndividualName

  public String getIndividualName()

• setIndividualName

  public void setIndividualName(String individualName)

• getDescription

  public String getDescription()

• setDescription

  public void setDescription(String description)

• getTaxonId

  public Integer getTaxonId()

• setTaxonId

  public void setTaxonId(Integer taxonId)

• getTags

  public String getTags()

• setTags

  public void setTags(String tags)

• getAdapters

  public String getAdapters()

• setAdapters

  public void setAdapters(String adapters)

• getRegions

  public String getRegions()

• setRegions

  public void setRegions(String regions)

• getExpectedNumberRuns

  public Integer getExpectedNumberRuns()

• setExpectedNumberRuns

  public void setExpectedNumberRuns(Integer expectedNumberRuns)

• getExpectedNumberSpots

  public Integer getExpectedNumberSpots()

• setExpectedNumberSpots

  public void setExpectedNumberSpots(Integer expectedNumberSpots)

• getExpectedNumberReads

  public Integer getExpectedNumberReads()

• setExpectedNumberReads

  public void setExpectedNumberReads(Integer expectedNumberReads)

• getSkip

  public Boolean getSkip()

• setSkip

  public void setSkip(Boolean skip)

• getIsPublic

  public Boolean getIsPublic()

• setIsPublic

  public void setIsPublic(Boolean isPublic)

• getSwAccession

  public Integer getSwAccession()

• setSwAccession

  public void setSwAccession(Integer swAccession)

• getCreateTstmp

  public Date getCreateTstmp()

• setCreateTstmp

  public void setCreateTstmp(Date createTstmp)

• getUpdateTstmp

  public Timestamp getUpdateTstmp()

• setUpdateTstmp

  public void setUpdateTstmp(Timestamp updateTstmp)

• getSampleCollection

  public Collection<Sample> getSampleCollection()

• setSampleCollection

  public void setSampleCollection(Collection<Sample> sampleCollection)

• getSampleCollection1

  public Collection<Sample> getSampleCollection1()

• setSampleCollection1

  public void setSampleCollection1(Collection<Sample> sampleCollection1)

• getLaneCollection

  public Collection<Lane> getLaneCollection()

• setLaneCollection

  public void setLaneCollection(Collection<Lane> laneCollection)

• getOwnerId

  public Registration getOwnerId()

• setOwnerId

  public void setOwnerId(Registration ownerId)

• getOrganismId

  public Organism getOrganismId()

• setOrganismId

  public void setOrganismId(Organism organismId)

• getExperimentId

  public Experiment getExperimentId()

• setExperimentId

  public void setExperimentId(Experiment experimentId)

• getIusCollection

  public Collection<Ius> getIusCollection()

• setIusCollection

  public void setIusCollection(Collection<Ius> iusCollection)

• getProcessingSamplesCollection

  public Collection<ProcessingSamples> getProcessingSamplesCollection()

• setProcessingSamplesCollection

  public void setProcessingSamplesCollection(Collection<ProcessingSamples> processingSamplesCollection)

• getSampleAttributeCollection

  public Collection<SampleAttribute> getSampleAttributeCollection()

• setSampleAttributeCollection

  public void setSampleAttributeCollection(Collection<SampleAttribute> sampleAttributeCollection)

• getSampleRelationshipCollection

  public Collection<SampleRelationship> getSampleRelationshipCollection()

• setSampleRelationshipCollection

  public void setSampleRelationshipCollection(Collection<SampleRelationship> sampleRelationshipCollection)

• getSampleRelationshipCollection1

  public Collection<SampleRelationship> getSampleRelationshipCollection1()

• setSampleRelationshipCollection1

  public void setSampleRelationshipCollection1(Collection<SampleRelationship> sampleRelationshipCollection1)

• hashCode

  public int hashCode()

  Overrides:

  hashCode in class Object

• equals

  public boolean equals(Object object)

  Overrides:

  equals in class Object

• toString

  public String toString()

  Overrides:

  toString in class Object

• onCycleDetected

  public Object onCycleDetected(com.sun.xml.bind.CycleRecoverable.Context cntxt)

  from http://wiki.eclipse.org/EclipseLink/Release/2.4.0/JAXB_RI_Extensions/Cycle_Recoverable

  Specified by:

  onCycleDetected in interface com.sun.xml.bind.CycleRecoverable

  Parameters:

  cntxt -

  Returns:

• toXml

  public void toXml()

  For debugging (silly generated classes have no model base class) TODO: create a base class and fix this

• loadRootSampleFlag

  public void loadRootSampleFlag()

• selectNullParentCountQuery

  public static javax.persistence.Query selectNullParentCountQuery(javax.persistence.EntityManager em,
                                                   int id)