SequencerRunDTO (SeqWare 1.1.2 API)

java.lang.Object
- net.sourceforge.seqware.common.model.SequencerRunDTO

All Implemented Interfaces:: Serializable

public class SequencerRunDTO
extends Object
implements Serializable

See Also:: Serialized Form

Constructor Summary

Constructors
Constructor and Description

SequencerRunDTO()
Constructor for SequencerRunDTO.

Constructors
Constructor and Description
`SequencerRunDTO()` Constructor for SequencerRunDTO.

Method Summary

Methods
Modifier and Type	Method and Description
`boolean`	`equals(Object other)`
`String`	`getColorMatrix()` Getter for the field `colorMatrix`.
`String`	`getColorMatrixCode()` Getter for the field `colorMatrixCode`.
`Date`	`getCreateTimestamp()` Getter for the field `createTimestamp`.
`Integer`	`getCycleCount()` Getter for the field `cycleCount`.
`String`	`getCycleDescriptor()` Getter for the field `cycleDescriptor`.
`String`	`getCycles()` Getter for the field `cycles`.
`String`	`getCycleSequence()` Getter for the field `cycleSequence`.
`String`	`getDescription()` Getter for the field `description`.
`int`	`getErrorCnt()` getErrorCnt.
`String`	`getFilePath()` Getter for the field `filePath`.
`Integer`	`getFlowCount()` Getter for the field `flowCount`.
`String`	`getFlowSequence()` Getter for the field `flowSequence`.
`String`	`getInstrumentName()` Getter for the field `instrumentName`.
`Lane`	`getLane1()` Getter for the field `lane1`.
`Lane`	`getLane2()` Getter for the field `lane2`.
`Lane`	`getLane3()` Getter for the field `lane3`.
`Lane`	`getLane4()` Getter for the field `lane4`.
`Lane`	`getLane5()` Getter for the field `lane5`.
`Lane`	`getLane6()` Getter for the field `lane6`.
`Lane`	`getLane7()` Getter for the field `lane7`.
`Lane`	`getLane8()` Getter for the field `lane8`.
`SortedSet<Lane>`	`getLanes()` Getter for the field `lanes`.
`String`	`getName()` Getter for the field `name`.
`Registration`	`getOwner()` Getter for the field `owner`.
`Boolean`	`getPairedEnd()` Getter for the field `pairedEnd`.
`String`	`getPairedFilePath()` Getter for the field `pairedFilePath`.
`Platform`	`getPlatform()` Getter for the field `platform`.
`int`	`getProcessingCnt()` getProcessingCnt.
`SortedSet<Processing>`	`getProcessings()` Getter for the field `processings`.
`String`	`getReadyToProcess()` Getter for the field `readyToProcess`.
`Integer`	`getRefLane()` Getter for the field `refLane`.
`String`	`getRunCenter()` Getter for the field `runCenter`.
`Integer`	`getSequencerRunId()` Getter for the field `sequencerRunId`.
`static long`	`getSerialVersionUID()` Getter for the field `serialVersionUID`.
`String`	`getSlideOneFilePath()` Getter for the field `slideOneFilePath`.
`Integer`	`getSlideOneLaneCount()` Getter for the field `slideOneLaneCount`.
`String`	`getSlideTwoFilePath()` Getter for the field `slideTwoFilePath`.
`Integer`	`getSlideTwoLaneCount()` Getter for the field `slideTwoLaneCount`.
`String`	`getStatus()` Getter for the field `status`.
`Date`	`getUpdateTimestamp()` Getter for the field `updateTimestamp`.
`Boolean`	`getUseIparIntensities()` Getter for the field `useIparIntensities`.
`int`	`hashCode()`
`void`	`setColorMatrix(String colorMatrix)` Setter for the field `colorMatrix`.
`void`	`setColorMatrixCode(String colorMatrixCode)` Setter for the field `colorMatrixCode`.
`void`	`setCreateTimestamp(Date createTimestamp)` Setter for the field `createTimestamp`.
`void`	`setCycleCount(Integer cycleCount)` Setter for the field `cycleCount`.
`void`	`setCycleDescriptor(String cycleDescriptor)` Setter for the field `cycleDescriptor`.
`void`	`setCycles(String cycles)` Setter for the field `cycles`.
`void`	`setCycleSequence(String cycleSequence)` Setter for the field `cycleSequence`.
`void`	`setDescription(String description)` Setter for the field `description`.
`void`	`setFilePath(String filePath)` Setter for the field `filePath`.
`void`	`setFlowCount(Integer flowCount)` Setter for the field `flowCount`.
`void`	`setFlowSequence(String flowSequence)` Setter for the field `flowSequence`.
`void`	`setInstrumentName(String instrumentName)` Setter for the field `instrumentName`.
`void`	`setLane1(Lane lane1)` Setter for the field `lane1`.
`void`	`setLane2(Lane lane2)` Setter for the field `lane2`.
`void`	`setLane3(Lane lane3)` Setter for the field `lane3`.
`void`	`setLane4(Lane lane4)` Setter for the field `lane4`.
`void`	`setLane5(Lane lane5)` Setter for the field `lane5`.
`void`	`setLane6(Lane lane6)` Setter for the field `lane6`.
`void`	`setLane7(Lane lane7)` Setter for the field `lane7`.
`void`	`setLane8(Lane lane8)` Setter for the field `lane8`.
`void`	`setLanes(SortedSet<Lane> lanes)` Setter for the field `lanes`.
`void`	`setName(String name)` Setter for the field `name`.
`void`	`setOwner(Registration owner)` Setter for the field `owner`.
`void`	`setPairedEnd(Boolean pairedEnd)` Setter for the field `pairedEnd`.
`void`	`setPairedFilePath(String pairedFilePath)` Setter for the field `pairedFilePath`.
`void`	`setPlatform(Platform platform)` Setter for the field `platform`.
`void`	`setProcessings(SortedSet<Processing> processings)` Setter for the field `processings`.
`void`	`setReadyToProcess(String readyToProcess)` Setter for the field `readyToProcess`.
`void`	`setRefLane(Integer refLane)` Setter for the field `refLane`.
`void`	`setRunCenter(String runCenter)` Setter for the field `runCenter`.
`void`	`setSequencerRunId(Integer sequencerRunId)` Setter for the field `sequencerRunId`.
`void`	`setSlideOneFilePath(String slideOneFilePath)` Setter for the field `slideOneFilePath`.
`void`	`setSlideOneLaneCount(Integer slideOneLaneCount)` Setter for the field `slideOneLaneCount`.
`void`	`setSlideTwoFilePath(String slideTwoFilePath)` Setter for the field `slideTwoFilePath`.
`void`	`setSlideTwoLaneCount(Integer slideTwoLaneCount)` Setter for the field `slideTwoLaneCount`.
`void`	`setStatus(String status)` Setter for the field `status`.
`void`	`setUpdateTimestamp(Date updateTimestamp)` Setter for the field `updateTimestamp`.
`void`	`setUseIparIntensities(Boolean useIparIntensities)` Setter for the field `useIparIntensities`.
`String`	`toString()`

Methods inherited from class java.lang.Object
clone, finalize, getClass, notify, notifyAll, wait, wait, wait

- Constructor Detail
  - SequencerRunDTO
```
public SequencerRunDTO()
```
    Constructor for SequencerRunDTO.
- Method Detail
  - toString
```
public String toString()
```
    Overrides:
    
    toString in class Object
  - equals
```
public boolean equals(Object other)
```
    Overrides:
    
    equals in class Object
    
    Parameters:
    other -
  - hashCode
```
public int hashCode()
```
    Overrides:
    
    hashCode in class Object
  - getErrorCnt
```
public int getErrorCnt()
```
    getErrorCnt.
    
    Returns:
    a int.
  - getProcessingCnt
```
public int getProcessingCnt()
```
    getProcessingCnt.
    
    Returns:
    a int.
  - getSequencerRunId
```
public Integer getSequencerRunId()
```
    Getter for the field sequencerRunId.
    
    Returns:
    a Integer object.
  - setSequencerRunId
```
public void setSequencerRunId(Integer sequencerRunId)
```
    Setter for the field sequencerRunId.
    
    Parameters:
    sequencerRunId - a Integer object.
  - getSerialVersionUID
```
public static long getSerialVersionUID()
```
    Getter for the field serialVersionUID.
    
    Returns:
    a long.
  - getCreateTimestamp
```
public Date getCreateTimestamp()
```
    Getter for the field createTimestamp.
    
    Returns:
    a Date object.
  - setCreateTimestamp
```
public void setCreateTimestamp(Date createTimestamp)
```
    Setter for the field createTimestamp.
    
    Parameters:
    createTimestamp - a Date object.
  - getCycles
```
public String getCycles()
```
    Getter for the field cycles.
    
    Returns:
    a String object.
  - setCycles
```
public void setCycles(String cycles)
```
    Setter for the field cycles.
    
    Parameters:
    cycles - a String object.
  - getDescription
```
public String getDescription()
```
    Getter for the field description.
    
    Returns:
    a String object.
  - setDescription
```
public void setDescription(String description)
```
    Setter for the field description.
    
    Parameters:
    description - a String object.
  - getFilePath
```
public String getFilePath()
```
    Getter for the field filePath.
    
    Returns:
    a String object.
  - setFilePath
```
public void setFilePath(String filePath)
```
    Setter for the field filePath.
    
    Parameters:
    filePath - a String object.
  - getRefLane
```
public Integer getRefLane()
```
    Getter for the field refLane.
    
    Returns:
    a Integer object.
  - setRefLane
```
public void setRefLane(Integer refLane)
```
    Setter for the field refLane.
    
    Parameters:
    refLane - a Integer object.
  - getStatus
```
public String getStatus()
```
    Getter for the field status.
    
    Returns:
    a String object.
  - setStatus
```
public void setStatus(String status)
```
    Setter for the field status.
    
    Parameters:
    status - a String object.
  - getUpdateTimestamp
```
public Date getUpdateTimestamp()
```
    Getter for the field updateTimestamp.
    
    Returns:
    a Date object.
  - setUpdateTimestamp
```
public void setUpdateTimestamp(Date updateTimestamp)
```
    Setter for the field updateTimestamp.
    
    Parameters:
    updateTimestamp - a Date object.
  - getName
```
public String getName()
```
    Getter for the field name.
    
    Returns:
    a String object.
  - setName
```
public void setName(String name)
```
    Setter for the field name.
    
    Parameters:
    name - a String object.
  - getProcessings
```
public SortedSet<Processing> getProcessings()
```
    Getter for the field processings.
    
    Returns:
    a SortedSet object.
  - setProcessings
```
public void setProcessings(SortedSet<Processing> processings)
```
    Setter for the field processings.
    
    Parameters:
    processings - a SortedSet object.
  - getLanes
```
public SortedSet<Lane> getLanes()
```
    Getter for the field lanes.
    
    Returns:
    a SortedSet object.
  - setLanes
```
public void setLanes(SortedSet<Lane> lanes)
```
    Setter for the field lanes.
    
    Parameters:
    lanes - a SortedSet object.
  - getLane1
```
public Lane getLane1()
```
    Getter for the field lane1.
    
    Returns:
    a Lane object.
  - setLane1
```
public void setLane1(Lane lane1)
```
    Setter for the field lane1.
    
    Parameters:
    lane1 - a Lane object.
  - getLane2
```
public Lane getLane2()
```
    Getter for the field lane2.
    
    Returns:
    a Lane object.
  - setLane2
```
public void setLane2(Lane lane2)
```
    Setter for the field lane2.
    
    Parameters:
    lane2 - a Lane object.
  - getLane3
```
public Lane getLane3()
```
    Getter for the field lane3.
    
    Returns:
    a Lane object.
  - setLane3
```
public void setLane3(Lane lane3)
```
    Setter for the field lane3.
    
    Parameters:
    lane3 - a Lane object.
  - getLane4
```
public Lane getLane4()
```
    Getter for the field lane4.
    
    Returns:
    a Lane object.
  - setLane4
```
public void setLane4(Lane lane4)
```
    Setter for the field lane4.
    
    Parameters:
    lane4 - a Lane object.
  - getLane5
```
public Lane getLane5()
```
    Getter for the field lane5.
    
    Returns:
    a Lane object.
  - setLane5
```
public void setLane5(Lane lane5)
```
    Setter for the field lane5.
    
    Parameters:
    lane5 - a Lane object.
  - getLane6
```
public Lane getLane6()
```
    Getter for the field lane6.
    
    Returns:
    a Lane object.
  - setLane6
```
public void setLane6(Lane lane6)
```
    Setter for the field lane6.
    
    Parameters:
    lane6 - a Lane object.
  - getLane7
```
public Lane getLane7()
```
    Getter for the field lane7.
    
    Returns:
    a Lane object.
  - setLane7
```
public void setLane7(Lane lane7)
```
    Setter for the field lane7.
    
    Parameters:
    lane7 - a Lane object.
  - getLane8
```
public Lane getLane8()
```
    Getter for the field lane8.
    
    Returns:
    a Lane object.
  - setLane8
```
public void setLane8(Lane lane8)
```
    Setter for the field lane8.
    
    Parameters:
    lane8 - a Lane object.
  - getReadyToProcess
```
public String getReadyToProcess()
```
    Getter for the field readyToProcess.
    
    Returns:
    a String object.
  - setReadyToProcess
```
public void setReadyToProcess(String readyToProcess)
```
    Setter for the field readyToProcess.
    
    Parameters:
    readyToProcess - a String object.
  - getPairedEnd
```
public Boolean getPairedEnd()
```
    Getter for the field pairedEnd.
    
    Returns:
    a Boolean object.
  - setPairedEnd
```
public void setPairedEnd(Boolean pairedEnd)
```
    Setter for the field pairedEnd.
    
    Parameters:
    pairedEnd - a Boolean object.
  - getPairedFilePath
```
public String getPairedFilePath()
```
    Getter for the field pairedFilePath.
    
    Returns:
    a String object.
  - setPairedFilePath
```
public void setPairedFilePath(String pairedFilePath)
```
    Setter for the field pairedFilePath.
    
    Parameters:
    pairedFilePath - a String object.
  - getUseIparIntensities
```
public Boolean getUseIparIntensities()
```
    Getter for the field useIparIntensities.
    
    Returns:
    a Boolean object.
  - setUseIparIntensities
```
public void setUseIparIntensities(Boolean useIparIntensities)
```
    Setter for the field useIparIntensities.
    
    Parameters:
    useIparIntensities - a Boolean object.
  - getOwner
```
public Registration getOwner()
```
    Getter for the field owner.
    
    Returns:
    a Registration object.
  - setOwner
```
public void setOwner(Registration owner)
```
    Setter for the field owner.
    
    Parameters:
    owner - a Registration object.
  - getPlatform
```
public Platform getPlatform()
```
    Getter for the field platform.
    
    Returns:
    a Platform object.
  - setPlatform
```
public void setPlatform(Platform platform)
```
    Setter for the field platform.
    
    Parameters:
    platform - a Platform object.
  - getInstrumentName
```
public String getInstrumentName()
```
    Getter for the field instrumentName.
    
    Returns:
    a String object.
  - setInstrumentName
```
public void setInstrumentName(String instrumentName)
```
    Setter for the field instrumentName.
    
    Parameters:
    instrumentName - a String object.
  - getCycleDescriptor
```
public String getCycleDescriptor()
```
    Getter for the field cycleDescriptor.
    
    Returns:
    a String object.
  - setCycleDescriptor
```
public void setCycleDescriptor(String cycleDescriptor)
```
    Setter for the field cycleDescriptor.
    
    Parameters:
    cycleDescriptor - a String object.
  - getCycleSequence
```
public String getCycleSequence()
```
    Getter for the field cycleSequence.
    
    Returns:
    a String object.
  - setCycleSequence
```
public void setCycleSequence(String cycleSequence)
```
    Setter for the field cycleSequence.
    
    Parameters:
    cycleSequence - a String object.
  - getCycleCount
```
public Integer getCycleCount()
```
    Getter for the field cycleCount.
    
    Returns:
    a Integer object.
  - setCycleCount
```
public void setCycleCount(Integer cycleCount)
```
    Setter for the field cycleCount.
    
    Parameters:
    cycleCount - a Integer object.
  - getColorMatrix
```
public String getColorMatrix()
```
    Getter for the field colorMatrix.
    
    Returns:
    a String object.
  - setColorMatrix
```
public void setColorMatrix(String colorMatrix)
```
    Setter for the field colorMatrix.
    
    Parameters:
    colorMatrix - a String object.
  - getColorMatrixCode
```
public String getColorMatrixCode()
```
    Getter for the field colorMatrixCode.
    
    Returns:
    a String object.
  - setColorMatrixCode
```
public void setColorMatrixCode(String colorMatrixCode)
```
    Setter for the field colorMatrixCode.
    
    Parameters:
    colorMatrixCode - a String object.
  - getSlideOneLaneCount
```
public Integer getSlideOneLaneCount()
```
    Getter for the field slideOneLaneCount.
    
    Returns:
    a Integer object.
  - setSlideOneLaneCount
```
public void setSlideOneLaneCount(Integer slideOneLaneCount)
```
    Setter for the field slideOneLaneCount.
    
    Parameters:
    slideOneLaneCount - a Integer object.
  - getSlideTwoLaneCount
```
public Integer getSlideTwoLaneCount()
```
    Getter for the field slideTwoLaneCount.
    
    Returns:
    a Integer object.
  - setSlideTwoLaneCount
```
public void setSlideTwoLaneCount(Integer slideTwoLaneCount)
```
    Setter for the field slideTwoLaneCount.
    
    Parameters:
    slideTwoLaneCount - a Integer object.
  - getSlideOneFilePath
```
public String getSlideOneFilePath()
```
    Getter for the field slideOneFilePath.
    
    Returns:
    a String object.
  - setSlideOneFilePath
```
public void setSlideOneFilePath(String slideOneFilePath)
```
    Setter for the field slideOneFilePath.
    
    Parameters:
    slideOneFilePath - a String object.
  - getSlideTwoFilePath
```
public String getSlideTwoFilePath()
```
    Getter for the field slideTwoFilePath.
    
    Returns:
    a String object.
  - setSlideTwoFilePath
```
public void setSlideTwoFilePath(String slideTwoFilePath)
```
    Setter for the field slideTwoFilePath.
    
    Parameters:
    slideTwoFilePath - a String object.
  - getFlowSequence
```
public String getFlowSequence()
```
    Getter for the field flowSequence.
    
    Returns:
    a String object.
  - setFlowSequence
```
public void setFlowSequence(String flowSequence)
```
    Setter for the field flowSequence.
    
    Parameters:
    flowSequence - a String object.
  - getFlowCount
```
public Integer getFlowCount()
```
    Getter for the field flowCount.
    
    Returns:
    a Integer object.
  - setFlowCount
```
public void setFlowCount(Integer flowCount)
```
    Setter for the field flowCount.
    
    Parameters:
    flowCount - a Integer object.
  - getRunCenter
```
public String getRunCenter()
```
    Getter for the field runCenter.
    
    Returns:
    a String object.
  - setRunCenter
```
public void setRunCenter(String runCenter)
```
    Setter for the field runCenter.
    
    Parameters:
    runCenter - a String object.

Class SequencerRunDTO

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Constructor Detail

SequencerRunDTO

Method Detail

toString

equals

hashCode

getErrorCnt

getProcessingCnt

getSequencerRunId

setSequencerRunId

getSerialVersionUID

getCreateTimestamp

setCreateTimestamp

getCycles

setCycles

getDescription

setDescription

getFilePath

setFilePath

getRefLane

setRefLane

getStatus

setStatus

getUpdateTimestamp

setUpdateTimestamp

getName

setName

getProcessings

setProcessings

getLanes

setLanes

getLane1

setLane1

getLane2

setLane2

getLane3

setLane3

getLane4

setLane4

getLane5

setLane5

getLane6

setLane6

getLane7

setLane7

getLane8

setLane8

getReadyToProcess

setReadyToProcess

getPairedEnd

setPairedEnd

getPairedFilePath

setPairedFilePath

getUseIparIntensities

setUseIparIntensities

getOwner

setOwner

getPlatform

setPlatform

getInstrumentName

setInstrumentName

getCycleDescriptor

setCycleDescriptor

getCycleSequence

setCycleSequence

getCycleCount

setCycleCount

getColorMatrix

setColorMatrix

getColorMatrixCode

setColorMatrixCode

getSlideOneLaneCount

setSlideOneLaneCount

getSlideTwoLaneCount

setSlideTwoLaneCount

getSlideOneFilePath