ProcessingDAOHibernate (SeqWare 1.1.2 API)

java.lang.Object
- org.springframework.dao.support.DaoSupport
- - org.springframework.orm.hibernate3.support.HibernateDaoSupport
  - - net.sourceforge.seqware.common.dao.hibernate.ProcessingDAOHibernate

All Implemented Interfaces:

ProcessingDAO, org.springframework.beans.factory.InitializingBean
```
public class ProcessingDAOHibernate
extends org.springframework.orm.hibernate3.support.HibernateDaoSupport
implements ProcessingDAO
```
ProcessingDAOHibernate class.

Version:

$Id: $Id

Author:

boconnor

Field Summary
- Fields inherited from class org.springframework.dao.support.DaoSupport
  logger

Constructor Summary

Constructors
Constructor and Description

ProcessingDAOHibernate()
Constructor for ProcessingDAOHibernate.

Constructors
Constructor and Description
`ProcessingDAOHibernate()` Constructor for ProcessingDAOHibernate.

Method Summary

Methods
Modifier and Type	Method and Description
`void`	`delete(Processing processing)` delete.
`List<Processing>`	`findByCriteria(String criteria, boolean isCaseSens)` findByCriteria.
`Processing`	`findByFilePath(String filePath)` findByFilePath.
`Processing`	`findByID(Integer id)` findByID.
`List<Processing>`	`findByOwnerID(Integer registrationId)` findByOwnerID.
`Processing`	`findBySWAccession(Integer swAccession)` findBySWAccession.
`List<File>`	`getFiles(Integer processingId)` getFiles.
`List<File>`	`getFiles(Integer processingId, String metaType)` getFiles.
`Integer`	`insert(Processing processing)` Inserts a new Processing and returns its sw_accession number.
`Integer`	`insert(Registration registration, Processing processing)` insert.
`boolean`	`isHasFile(Integer processingId)` isHasFile.
`boolean`	`isHasFile(Integer processingId, String metaType)` isHasFile.
`List<Processing>`	`list()` list.
`void`	`update(Processing processing)` update.
`void`	`update(Registration registration, Processing processing)` update.
`Processing`	`updateDetached(Processing processing)` updateDetached.
`Processing`	`updateDetached(Registration registration, Processing processing)` updateDetached.

Methods inherited from class org.springframework.orm.hibernate3.support.HibernateDaoSupport
checkDaoConfig, convertHibernateAccessException, createHibernateTemplate, getHibernateTemplate, getSession, getSession, getSessionFactory, releaseSession, setHibernateTemplate, setSessionFactory

Methods inherited from class org.springframework.dao.support.DaoSupport
afterPropertiesSet, initDao

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Constructor Detail
  - ProcessingDAOHibernate
```
public ProcessingDAOHibernate()
```
    Constructor for ProcessingDAOHibernate.
- Method Detail
  - insert
```
public Integer insert(Processing processing)
```
    Inserts a new Processing and returns its sw_accession number.
    
    Specified by:
    
    insert in interface ProcessingDAO
    
    Parameters:
    processing - Processing to be inserted.
    
    Returns:
    The SeqWare Accession number for the newly inserted Processing.
  - update
```
public void update(Processing processing)
```
    update.
    Updates an instance of Processing in the database.
    
    Specified by:
    
    update in interface ProcessingDAO
    
    Parameters:
    processing - a Processing object.
  - delete
```
public void delete(Processing processing)
```
    delete.
    Updates an instance of Processing in the database. This is likely to not work given the complex tree structures created with processing entries.
    
    Specified by:
    
    delete in interface ProcessingDAO
    
    Parameters:
    processing - a Processing object.
  - getFiles
```
public List<File> getFiles(Integer processingId)
```
    getFiles.
    WITH RECURSIVE "processing_root_to_leaf" ("child_id", "parent_id") AS ( SELECT p."child_id" as "child_id", p."parent_id" FROM "processing_relationship" p where p."parent_id" = 53851 UNION ALL SELECT p."child_id", rl."parent_id" FROM "processing_root_to_leaf" rl, "processing_relationship" p WHERE p."parent_id" = rl."child_id" ) --select * from "processing_root_to_leaf" p; select distinct file_id from "processing_root_to_leaf"p, processing_files pf where p.parent_id = processing_id or p.child_id = processing_id;
    
    Specified by:
    
    getFiles in interface ProcessingDAO
    
    Parameters:
    processingId - a Integer object.
    
    Returns:
    a List object.
  - isHasFile
```
public boolean isHasFile(Integer processingId)
```
    isHasFile.
    
    Specified by:
    
    isHasFile in interface ProcessingDAO
    
    Parameters:
    processingId - a Integer object.
    
    Returns:
    a boolean.
  - getFiles
```
public List<File> getFiles(Integer processingId,
                  String metaType)
```
    getFiles.
    
    Specified by:
    
    getFiles in interface ProcessingDAO
    
    Parameters:
    processingId - a Integer object.
    metaType - a String object.
    
    Returns:
    a List object.
  - isHasFile
```
public boolean isHasFile(Integer processingId,
                String metaType)
```
    isHasFile.
    
    Specified by:
    
    isHasFile in interface ProcessingDAO
    
    Parameters:
    processingId - a Integer object.
    metaType - a String object.
    
    Returns:
    a boolean.
  - findByFilePath
```
public Processing findByFilePath(String filePath)
```
    findByFilePath.
    Finds an instance of Processing in the database by the Processing emailAddress.
    
    Specified by:
    
    findByFilePath in interface ProcessingDAO
    
    Parameters:
    filePath - a String object.
    
    Returns:
    a Processing object.
  - findByID
```
public Processing findByID(Integer id)
```
    findByID.
    Finds an instance of SequencerRun in the database by the SequencerRun ID.
    
    Specified by:
    
    findByID in interface ProcessingDAO
    
    Parameters:
    id -
    
    Returns:
    a Processing object.
  - findBySWAccession
```
public Processing findBySWAccession(Integer swAccession)
```
    findBySWAccession.
    
    Specified by:
    
    findBySWAccession in interface ProcessingDAO
    
    Parameters:
    swAccession - a Integer object.
    
    Returns:
    a Processing object.
  - findByOwnerID
```
public List<Processing> findByOwnerID(Integer registrationId)
```
    findByOwnerID.
    
    Specified by:
    
    findByOwnerID in interface ProcessingDAO
    
    Parameters:
    registrationId - a Integer object.
    
    Returns:
    a List object.
  - findByCriteria
```
public List<Processing> findByCriteria(String criteria,
                              boolean isCaseSens)
```
    findByCriteria.
    
    Specified by:
    
    findByCriteria in interface ProcessingDAO
    
    Parameters:
    criteria - a String object.
    isCaseSens - a boolean.
    
    Returns:
    a List object.
  - updateDetached
```
public Processing updateDetached(Processing processing)
```
    updateDetached.
    
    Specified by:
    
    updateDetached in interface ProcessingDAO
    
    Parameters:
    processing - a Processing object.
    
    Returns:
    a Processing object.
  - list
```
public List<Processing> list()
```
    list.
    
    Specified by:
    
    list in interface ProcessingDAO
    
    Returns:
    a List object.
  - update
```
public void update(Registration registration,
          Processing processing)
```
    update.
    
    Specified by:
    
    update in interface ProcessingDAO
    
    Parameters:
    registration - a Registration object.
    processing - a Processing object.
  - insert
```
public Integer insert(Registration registration,
             Processing processing)
```
    insert.
    
    Specified by:
    
    insert in interface ProcessingDAO
    
    Parameters:
    registration - a Registration object.
    processing - a Processing object.
    
    Returns:
    a Integer object.
  - updateDetached
```
public Processing updateDetached(Registration registration,
                        Processing processing)
```
    updateDetached.
    
    Specified by:
    
    updateDetached in interface ProcessingDAO
    
    Parameters:
    registration - a Registration object.
    processing - a Processing object.
    
    Returns:
    a Processing object.

Class ProcessingDAOHibernate

Field Summary

Fields inherited from class org.springframework.dao.support.DaoSupport

Constructor Summary

Method Summary

Methods inherited from class org.springframework.orm.hibernate3.support.HibernateDaoSupport

Methods inherited from class org.springframework.dao.support.DaoSupport

Methods inherited from class java.lang.Object

Constructor Detail

ProcessingDAOHibernate

Method Detail

insert

update

delete

getFiles

isHasFile

getFiles

isHasFile

findByFilePath

findByID

findBySWAccession

findByOwnerID

findByCriteria

updateDetached

list

update

insert

updateDetached