Method Detail

• insert

  Integer insert(Workflow workflow)

  Inserts a new Workflow and returns its sw_accession number.

  Parameters:

  workflow - Workflow to be inserted.

  Returns:

  The SeqWare Accession number for the newly inserted workflow.

• insert

  Integer insert(Registration registration,
               Workflow workflow)

  insert.

  Parameters:

  registration - a Registration object.

  workflow - a Workflow object.

  Returns:

  a Integer object.

• update

  void update(Workflow workflow)

  update.

  Parameters:

  workflow - a Workflow object.

• update

  void update(Registration registration,
            Workflow workflow)

  update.

  Parameters:

  registration - a Registration object.

  workflow - a Workflow object.

• delete

  void delete(Workflow workflow)

  delete.

  Parameters:

  workflow - a Workflow object.

• list

  List<Workflow> list()

  list.

  Returns:

  a List object.

• list

  List<Workflow> list(Registration registration)

  list.

  Parameters:

  registration - a Registration object.

  Returns:

  a List object.

• listMyShared

  List<Workflow> listMyShared(Registration registration)

  listMyShared.

  Parameters:

  registration - a Registration object.

  Returns:

  a List object.

• listSharedWithMe

  List<Workflow> listSharedWithMe(Registration registration)

  listSharedWithMe.

  Parameters:

  registration - a Registration object.

  Returns:

  a List object.

• findByName

  List<Workflow> findByName(String name)

  findByName.

  Parameters:

  name - a String object.

  Returns:

  a List object.

• findByID

  Workflow findByID(Integer wfID)

  findByID.

  Parameters:

  wfID - a Integer object.

  Returns:

  a Workflow object.

• findBySWAccession

  Workflow findBySWAccession(Integer swAccession)

  findBySWAccession.

  Parameters:

  swAccession - a Integer object.

  Returns:

  a Workflow object.

• updateDetached

  Workflow updateDetached(Workflow workflow)

  updateDetached.

  Parameters:

  workflow - a Workflow object.

  Returns:

  a Workflow object.

• updateDetached

  Workflow updateDetached(Registration registration,
                        Workflow workflow)

  updateDetached.

  Parameters:

  registration - a Registration object.

  workflow - a Workflow object.

  Returns:

  a Workflow object.

• findByCriteria

  List<Workflow> findByCriteria(String criteria,
                              boolean isCaseSens)

  findByCriteria.

  Parameters:

  criteria - a String object.

  isCaseSens - a boolean.

  Returns:

  a List object.

• listWorkflows

  List<Workflow> listWorkflows(SequencerRun sr)

  listWorkflows.

  Parameters:

  sr - a SequencerRun object.

  Returns:

  a List object.