SequencerRunServiceImpl (SeqWare 1.1.2 API)

java.lang.Object
- net.sourceforge.seqware.common.business.impl.SequencerRunServiceImpl

All Implemented Interfaces:

SequencerRunService
```
public class SequencerRunServiceImpl
extends Object
implements SequencerRunService
```
SequencerRunServiceImpl class.

Version:

$Id: $Id

Author:

boconnor

Field Summary
- Fields inherited from interface net.sourceforge.seqware.common.business.SequencerRunService
  NAME

Constructor Summary

Constructors
Constructor and Description

SequencerRunServiceImpl()
Constructor for SequencerRunServiceImpl.

Constructors
Constructor and Description
`SequencerRunServiceImpl()` Constructor for SequencerRunServiceImpl.

Method Summary

Methods
Modifier and Type	Method and Description
`void`	`delete(SequencerRun sequencerRun)` delete.
`List<SequencerRun>`	`findByCriteria(String criteria, boolean isCaseSens)` findByCriteria.
`SequencerRun`	`findByID(Integer expID)` findByID.
`SequencerRun`	`findByName(String name)` findByName.
`List<SequencerRun>`	`findByOwnerID(Integer registrationId)` findByOwnerID.
`SequencerRun`	`findBySWAccession(Integer swAccession)` findBySWAccession.
`boolean`	`hasNameBeenUsed(String oldName, String newName)` hasNameBeenUsed.
`Integer`	`insert(Registration registration, SequencerRun sequencerRun)` insert.
`Integer`	`insert(Registration registration, SequencerRunWizardDTO sequencerRun)` insert.
`Integer`	`insert(SequencerRun sequencerRun)` insert.
`Integer`	`insert(SequencerRunWizardDTO sequencerRun)` This is being used to create a new SequencerRun object and the correct number of assocated Lanes
`List<SequencerRun>`	`list()` list.
`List<SequencerRun>`	`list(Registration registration)` list.
`List<SequencerRun>`	`list(Registration registration, Boolean isAsc)` list.
`void`	`setFileDAO(FileDAO fileDAO)` Sets a private member variable with an instance of an implementation of FileDAO.
`void`	`setLaneDAO(LaneDAO laneDAO)` Sets a private member variable with an instance of an implementation of LaneDAO.
`List<SequencerRun>`	`setProcCountInfo(List<SequencerRun> list)` setProcCountInfo.
`void`	`setSequencerRunDAO(SequencerRunDAO sequencerRunDAO)` setSequencerRunDAO.
`void`	`update(Registration registration, SequencerRun sequencerRun)` update.
`void`	`update(SequencerRun sequencerRun)` update.
`SequencerRun`	`updateDetached(Registration registration, SequencerRun sequencerRun)` updateDetached.
`SequencerRun`	`updateDetached(SequencerRun sequencerRun)` updateDetached.

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Constructor Detail
  - SequencerRunServiceImpl
```
public SequencerRunServiceImpl()
```
    Constructor for SequencerRunServiceImpl.
- Method Detail
  - setSequencerRunDAO
```
public void setSequencerRunDAO(SequencerRunDAO sequencerRunDAO)
```
    setSequencerRunDAO.
    Sets a private member variable with an instance of an implementation of SequencerRunDAO. This method is called by the Spring framework at run time.
    
    Specified by:
    
    setSequencerRunDAO in interface SequencerRunService
    
    Parameters:
    sequencerRunDAO - a SequencerRunDAO object.
    See Also:
    SequencerRunDAO
  - setLaneDAO
```
public void setLaneDAO(LaneDAO laneDAO)
```
    Sets a private member variable with an instance of an implementation of LaneDAO. This method is called by the Spring framework at run time.
    
    Parameters:
    laneDAO - implementation of LaneDAO
    See Also:
    LaneDAO
  - setFileDAO
```
public void setFileDAO(FileDAO fileDAO)
```
    Sets a private member variable with an instance of an implementation of FileDAO. This method is called by the Spring framework at run time.
    
    Parameters:
    fileDAO - implementation of FileDAO
    See Also:
    FileDAO
  - insert
```
public Integer insert(SequencerRun sequencerRun)
```
    insert.
    Inserts an instance of SequencerRun into the database.
    
    Specified by:
    
    insert in interface SequencerRunService
    
    Parameters:
    sequencerRun - a SequencerRun object.
    
    Returns:
  - insert
```
public Integer insert(SequencerRunWizardDTO sequencerRun)
```
    This is being used to create a new SequencerRun object and the correct number of assocated Lanes
    
    Specified by:
    
    insert in interface SequencerRunService
    
    Parameters:
    sequencerRun - a SequencerRunWizardDTO object.
    
    Returns:
  - update
```
public void update(SequencerRun sequencerRun)
```
    update.
    Updates an instance of SequencerRun in the database.
    
    Specified by:
    
    update in interface SequencerRunService
    
    Parameters:
    sequencerRun - a SequencerRun object.
  - delete
```
public void delete(SequencerRun sequencerRun)
```
    delete.
    Deletes an instance of SequencerRun in the database.
    
    Specified by:
    
    delete in interface SequencerRunService
    
    Parameters:
    sequencerRun - a SequencerRun object.
  - setProcCountInfo
```
public List<SequencerRun> setProcCountInfo(List<SequencerRun> list)
```
    setProcCountInfo.
    
    Specified by:
    
    setProcCountInfo in interface SequencerRunService
    
    Parameters:
    list - a List object.
    
    Returns:
    a List object.
  - list
```
public List<SequencerRun> list(Registration registration)
```
    list.
    
    Specified by:
    
    list in interface SequencerRunService
    
    Parameters:
    registration - a Registration object.
    
    Returns:
    a List object.
  - list
```
public List<SequencerRun> list(Registration registration,
                      Boolean isAsc)
```
    list.
    
    Specified by:
    
    list in interface SequencerRunService
    
    Parameters:
    registration - a Registration object.
    isAsc - a Boolean object.
    
    Returns:
    a List object.
  - findByName
```
public SequencerRun findByName(String name)
```
    findByName.
    Finds an instance of SequencerRun in the database by the SequencerRun emailAddress, and copies the SequencerRun properties to an instance of SequencerRun.
    
    Specified by:
    
    findByName in interface SequencerRunService
    
    Parameters:
    name - a String object.
    
    Returns:
    a SequencerRun object.
  - findByID
```
public SequencerRun findByID(Integer expID)
```
    findByID.
    
    Specified by:
    
    findByID in interface SequencerRunService
    
    Parameters:
    expID - a Integer object.
    
    Returns:
    a SequencerRun object.
  - findBySWAccession
```
public SequencerRun findBySWAccession(Integer swAccession)
```
    findBySWAccession.
    
    Specified by:
    
    findBySWAccession in interface SequencerRunService
    
    Parameters:
    swAccession - a Integer object.
    
    Returns:
    a SequencerRun object.
  - findByOwnerID
```
public List<SequencerRun> findByOwnerID(Integer registrationId)
```
    findByOwnerID.
    
    Specified by:
    
    findByOwnerID in interface SequencerRunService
    
    Parameters:
    registrationId - a Integer object.
    
    Returns:
    a List object.
  - hasNameBeenUsed
```
public boolean hasNameBeenUsed(String oldName,
                      String newName)
```
    hasNameBeenUsed.
    Determines if an email address has already been used.
    
    Specified by:
    
    hasNameBeenUsed in interface SequencerRunService
    
    Parameters:
    oldName - a String object.
    newName - a String object.
    
    Returns:
    a boolean.
  - findByCriteria
```
public List<SequencerRun> findByCriteria(String criteria,
                                boolean isCaseSens)
```
    findByCriteria.
    
    Specified by:
    
    findByCriteria in interface SequencerRunService
    
    Parameters:
    criteria - a String object.
    isCaseSens - a boolean.
    
    Returns:
    a List object.
  - updateDetached
```
public SequencerRun updateDetached(SequencerRun sequencerRun)
```
    updateDetached.
    
    Specified by:
    
    updateDetached in interface SequencerRunService
    
    Parameters:
    sequencerRun - a SequencerRun object.
    
    Returns:
    a SequencerRun object.
  - list
```
public List<SequencerRun> list()
```
    list.
    
    Specified by:
    
    list in interface SequencerRunService
    
    Returns:
    a List object.
  - update
```
public void update(Registration registration,
          SequencerRun sequencerRun)
```
    update.
    
    Specified by:
    
    update in interface SequencerRunService
    
    Parameters:
    registration - a Registration object.
    sequencerRun - a SequencerRun object.
  - insert
```
public Integer insert(Registration registration,
             SequencerRun sequencerRun)
```
    insert.
    
    Specified by:
    
    insert in interface SequencerRunService
    
    Parameters:
    registration - a Registration object.
    sequencerRun - a SequencerRun object.
    
    Returns:
  - insert
```
public Integer insert(Registration registration,
             SequencerRunWizardDTO sequencerRun)
```
    insert.
    
    Specified by:
    
    insert in interface SequencerRunService
    
    Parameters:
    registration - a Registration object.
    sequencerRun - a SequencerRunWizardDTO object.
    
    Returns:
  - updateDetached
```
public SequencerRun updateDetached(Registration registration,
                          SequencerRun sequencerRun)
```
    updateDetached.
    
    Specified by:
    
    updateDetached in interface SequencerRunService
    
    Parameters:
    registration - a Registration object.
    sequencerRun - a SequencerRun object.
    
    Returns:
    a SequencerRun object.

Class SequencerRunServiceImpl

Field Summary

Fields inherited from interface net.sourceforge.seqware.common.business.SequencerRunService

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Constructor Detail

SequencerRunServiceImpl

Method Detail

setSequencerRunDAO

setLaneDAO

setFileDAO

insert

insert

update

delete

setProcCountInfo

list

list

findByName

findByID

findBySWAccession

findByOwnerID

hasNameBeenUsed

findByCriteria

updateDetached

list

update

insert

insert

updateDetached