StudyServiceImpl (SeqWare 1.1.2 API)

java.lang.Object
- net.sourceforge.seqware.common.business.impl.StudyServiceImpl

All Implemented Interfaces:

StudyService
```
public class StudyServiceImpl
extends Object
implements StudyService
```
StudyServiceImpl class.

Version:

$Id: $Id

Author:

boconnor

Field Summary
- Fields inherited from interface net.sourceforge.seqware.common.business.StudyService
  NAME

Constructor Summary

Constructors
Constructor and Description

StudyServiceImpl()
Constructor for StudyServiceImpl.

Constructors
Constructor and Description
`StudyServiceImpl()` Constructor for StudyServiceImpl.

Method Summary

Methods
Modifier and Type	Method and Description
`void`	`delete(Study study, boolean deleteRealFiles)` delete.
`List<Study>`	`findByCriteria(String criteria)` findByCriteria.
`List<Study>`	`findByCriteria(String criteria, boolean isCaseSens)` findByCriteria.
`Study`	`findByID(Integer studyID)` findByID.
`List<Study>`	`findByOwnerID(Integer registrationId)` findByOwnerID.
`Study`	`findBySWAccession(Integer swAccession)` findBySWAccession.
`List<Study>`	`findByTitle(String title)` findByTitle.
`int`	`getFailedCount(Study study)` getFailedCount.
`List<File>`	`getFiles(Integer studyId)` getFiles.
`List<File>`	`getFiles(Integer studyId, String metaType)` getFiles.
`int`	`getFinishedCount(Study study)` getFinishedCount.
`int`	`getRunningCount(Study study)` getRunningCount.
`StudyDAO`	`getStudyDAO()` Getter for the field `studyDAO`.
`StudyTypeDAO`	`getStudyTypeDAO()` Getter for the field `studyTypeDAO`.
`boolean`	`hasTitleBeenUsed(String oldTitle, String newTitle)` hasTitleBeenUsed.
`Integer`	`insert(Registration registration, Study study)` insert.
`Integer`	`insert(Study study)` insert.
`boolean`	`isHasFile(Integer studyId)` isHasFile.
`boolean`	`isHasFile(Integer studyId, String metaType)` isHasFile.
`List<Study>`	`list()` list.
`List<Study>`	`list(Registration registration)` list.
`List<Study>`	`list(Registration registration, Boolean isAcs)` list.
`List<Study>`	`listMyShared(Registration registration, Boolean isAcs)` listMyShared.
`List<Study>`	`listSharedWithMe(Registration registration)` listSharedWithMe.
`List<Study>`	`listSharedWithMe(Registration registration, Boolean isAcs)` listSharedWithMe.
`List<Study>`	`listStudyHasFile(Registration registration, String metaType, Boolean isAsc)` listStudyHasFile.
`List<Study>`	`listWithHasFile(List<Study> list)` listWithHasFile.
`List<Study>`	`listWithHasFile(List<Study> list, String metaType)` listWithHasFile.
`void`	`merge(Study study)` merge.
`void`	`setFileDAO(FileDAO fileDAO)` Sets a private member variable with an instance of an implementation of FileDAO.
`void`	`setStudyDAO(StudyDAO studyDAO)` setStudyDAO.
`void`	`setStudyTypeDAO(StudyTypeDAO studyTypeDAO)` Setter for the field `studyTypeDAO`.
`void`	`update(Registration registration, Study study)` update.
`void`	`update(Study study)` update.
`Study`	`updateDetached(Registration registration, Study study)` updateDetached.
`Study`	`updateDetached(Study study)` updateDetached.
`void`	`updateOwners(Integer swAccession)` updateOwners.

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Constructor Detail
  - StudyServiceImpl
```
public StudyServiceImpl()
```
    Constructor for StudyServiceImpl.
- Method Detail
  - setStudyDAO
```
public void setStudyDAO(StudyDAO studyDAO)
```
    setStudyDAO.
    Sets a private member variable with an instance of an implementation of StudyDAO. This method is called by the Spring framework at run time.
    
    Specified by:
    
    setStudyDAO in interface StudyService
    
    Parameters:
    studyDAO - a StudyDAO object.
    See Also:
    StudyDAO
  - setFileDAO
```
public void setFileDAO(FileDAO fileDAO)
```
    Sets a private member variable with an instance of an implementation of FileDAO. This method is called by the Spring framework at run time.
    
    Parameters:
    fileDAO - implementation of FileDAO
    See Also:
    FileDAO
  - insert
```
public Integer insert(Study study)
```
    insert.
    Inserts an instance of Study into the database.
    
    Specified by:
    
    insert in interface StudyService
    
    Parameters:
    study - a Study object.
    
    Returns:
    a Integer object.
  - update
```
public void update(Study study)
```
    update.
    Updates an instance of Study in the database.
    
    Specified by:
    
    update in interface StudyService
    
    Parameters:
    study - a Study object.
  - merge
```
public void merge(Study study)
```
    merge.
    
    Specified by:
    
    merge in interface StudyService
    
    Parameters:
    study - a Study object.
  - delete
```
public void delete(Study study,
          boolean deleteRealFiles)
```
    delete.
    Updates an instance of Study in the database.
    
    Specified by:
    
    delete in interface StudyService
    
    Parameters:
    study -
    deleteRealFiles -
  - getFiles
```
public List<File> getFiles(Integer studyId)
```
    getFiles.
    
    Specified by:
    
    getFiles in interface StudyService
    
    Parameters:
    studyId - a Integer object.
    
    Returns:
    a List object.
  - isHasFile
```
public boolean isHasFile(Integer studyId)
```
    isHasFile.
    
    Specified by:
    
    isHasFile in interface StudyService
    
    Parameters:
    studyId - a Integer object.
    
    Returns:
    a boolean.
  - getFiles
```
public List<File> getFiles(Integer studyId,
                  String metaType)
```
    getFiles.
    
    Specified by:
    
    getFiles in interface StudyService
    
    Parameters:
    studyId - a Integer object.
    metaType - a String object.
    
    Returns:
    a List object.
  - isHasFile
```
public boolean isHasFile(Integer studyId,
                String metaType)
```
    isHasFile.
    
    Specified by:
    
    isHasFile in interface StudyService
    
    Parameters:
    studyId - a Integer object.
    metaType - a String object.
    
    Returns:
    a boolean.
  - list
```
public List<Study> list(Registration registration)
```
    list.
    
    Specified by:
    
    list in interface StudyService
    
    Parameters:
    registration - a Registration object.
    
    Returns:
    a List object.
  - list
```
public List<Study> list(Registration registration,
               Boolean isAcs)
```
    list.
    
    Specified by:
    
    list in interface StudyService
    
    Parameters:
    registration - a Registration object.
    isAcs - a Boolean object.
    
    Returns:
    a List object.
  - listMyShared
```
public List<Study> listMyShared(Registration registration,
                       Boolean isAcs)
```
    listMyShared.
    
    Specified by:
    
    listMyShared in interface StudyService
    
    Parameters:
    registration - a Registration object.
    isAcs - a Boolean object.
    
    Returns:
    a List object.
  - listSharedWithMe
```
public List<Study> listSharedWithMe(Registration registration)
```
    listSharedWithMe.
    
    Specified by:
    
    listSharedWithMe in interface StudyService
    
    Parameters:
    registration - a Registration object.
    
    Returns:
    a List object.
  - listSharedWithMe
```
public List<Study> listSharedWithMe(Registration registration,
                           Boolean isAcs)
```
    listSharedWithMe.
    
    Specified by:
    
    listSharedWithMe in interface StudyService
    
    Parameters:
    registration - a Registration object.
    isAcs - a Boolean object.
    
    Returns:
    a List object.
  - findByTitle
```
public List<Study> findByTitle(String title)
```
    findByTitle.
    Finds an instance of Study in the database by the Study emailAddress, and copies the Study properties to an instance of Study.
    
    Specified by:
    
    findByTitle in interface StudyService
    
    Parameters:
    title - a String object.
    
    Returns:
    a Study object.
  - findByID
```
public Study findByID(Integer studyID)
```
    findByID.
    
    Specified by:
    
    findByID in interface StudyService
    
    Parameters:
    studyID -
    
    Returns:
    a Study object.
  - findBySWAccession
```
public Study findBySWAccession(Integer swAccession)
```
    findBySWAccession.
    
    Specified by:
    
    findBySWAccession in interface StudyService
    
    Parameters:
    swAccession - a Integer object.
    
    Returns:
    a Study object.
  - findByOwnerID
```
public List<Study> findByOwnerID(Integer registrationId)
```
    findByOwnerID.
    
    Specified by:
    
    findByOwnerID in interface StudyService
    
    Parameters:
    registrationId - a Integer object.
    
    Returns:
    a List object.
  - findByCriteria
```
public List<Study> findByCriteria(String criteria,
                         boolean isCaseSens)
```
    findByCriteria.
    
    Specified by:
    
    findByCriteria in interface StudyService
    
    Parameters:
    criteria - a String object.
    isCaseSens - a boolean.
    
    Returns:
    a List object.
  - findByCriteria
```
public List<Study> findByCriteria(String criteria)
```
    findByCriteria.
    
    Specified by:
    
    findByCriteria in interface StudyService
    
    Parameters:
    criteria - a String object.
    
    Returns:
    a List object.
  - hasTitleBeenUsed
```
public boolean hasTitleBeenUsed(String oldTitle,
                       String newTitle)
```
    hasTitleBeenUsed.
    Determines if an study title has already been used.
    
    Specified by:
    
    hasTitleBeenUsed in interface StudyService
    
    Parameters:
    oldTitle - a String object.
    newTitle - a String object.
    
    Returns:
    a boolean.
  - listWithHasFile
```
public List<Study> listWithHasFile(List<Study> list)
```
    listWithHasFile.
    
    Specified by:
    
    listWithHasFile in interface StudyService
    
    Parameters:
    list - a List object.
    
    Returns:
    a List object.
  - listWithHasFile
```
public List<Study> listWithHasFile(List<Study> list,
                          String metaType)
```
    listWithHasFile.
    
    Specified by:
    
    listWithHasFile in interface StudyService
    
    Parameters:
    list - a List object.
    metaType - a String object.
    
    Returns:
    a List object.
  - list
```
public List<Study> list()
```
    list.
    
    Specified by:
    
    list in interface StudyService
    
    Returns:
    a List object.
  - listStudyHasFile
```
public List<Study> listStudyHasFile(Registration registration,
                           String metaType,
                           Boolean isAsc)
```
    listStudyHasFile.
    
    Specified by:
    
    listStudyHasFile in interface StudyService
    
    Parameters:
    isAsc -
    registration - a Registration object.
    metaType - a String object.
    
    Returns:
    a List object.
  - getStudyTypeDAO
```
public StudyTypeDAO getStudyTypeDAO()
```
    Getter for the field studyTypeDAO.
    
    Returns:
    a StudyTypeDAO object.
  - setStudyTypeDAO
```
public void setStudyTypeDAO(StudyTypeDAO studyTypeDAO)
```
    Setter for the field studyTypeDAO.
    
    Parameters:
    studyTypeDAO - a StudyTypeDAO object.
  - getStudyDAO
```
public StudyDAO getStudyDAO()
```
    Getter for the field studyDAO.
    
    Returns:
    a StudyDAO object.
  - updateDetached
```
public Study updateDetached(Study study)
```
    updateDetached.
    
    Specified by:
    
    updateDetached in interface StudyService
    
    Parameters:
    study - a Study object.
    
    Returns:
    a Study object.
  - updateOwners
```
public void updateOwners(Integer swAccession)
```
    updateOwners.
    
    Specified by:
    
    updateOwners in interface StudyService
    
    Parameters:
    swAccession - a Integer object.
  - update
```
public void update(Registration registration,
          Study study)
```
    update.
    
    Specified by:
    
    update in interface StudyService
    
    Parameters:
    registration - a Registration object.
    study - a Study object.
  - insert
```
public Integer insert(Registration registration,
             Study study)
```
    insert.
    
    Specified by:
    
    insert in interface StudyService
    
    Parameters:
    registration - a Registration object.
    study - a Study object.
    
    Returns:
    a Integer object.
  - updateDetached
```
public Study updateDetached(Registration registration,
                   Study study)
```
    updateDetached.
    
    Specified by:
    
    updateDetached in interface StudyService
    
    Parameters:
    registration - a Registration object.
    study - a Study object.
    
    Returns:
    a Study object.
  - getRunningCount
```
public int getRunningCount(Study study)
```
    getRunningCount.
    
    Specified by:
    
    getRunningCount in interface StudyService
    
    Parameters:
    study - a Study object.
    
    Returns:
    a int.
  - getFinishedCount
```
public int getFinishedCount(Study study)
```
    getFinishedCount.
    
    Specified by:
    
    getFinishedCount in interface StudyService
    
    Parameters:
    study - a Study object.
    
    Returns:
    a int.
  - getFailedCount
```
public int getFailedCount(Study study)
```
    getFailedCount.
    
    Specified by:
    
    getFailedCount in interface StudyService
    
    Parameters:
    study - a Study object.
    
    Returns:
    a int.

Class StudyServiceImpl

Field Summary

Fields inherited from interface net.sourceforge.seqware.common.business.StudyService

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Constructor Detail

StudyServiceImpl

Method Detail

setStudyDAO

setFileDAO

insert

update

merge

delete

getFiles

isHasFile

getFiles

isHasFile

list

list

listMyShared

listSharedWithMe

listSharedWithMe

findByTitle

findByID

findBySWAccession

findByOwnerID

findByCriteria

findByCriteria

hasTitleBeenUsed

listWithHasFile

listWithHasFile

list

listStudyHasFile

getStudyTypeDAO

setStudyTypeDAO

getStudyDAO

updateDetached

updateOwners

update

insert

updateDetached

getRunningCount

getFinishedCount

getFailedCount