StudyDAO (SeqWare 1.1.2 API)

All Known Implementing Classes:

StudyDAOHibernate
```
public interface StudyDAO
```
StudyDAO interface.

Version:

$Id: $Id

Author:

boconnor

Method Summary

Methods
Modifier and Type	Method and Description
`void`	`delete(Study study)` delete.
`List<Study>`	`findByCriteria(String criteria)` findByCriteria.
`List<Study>`	`findByCriteria(String criteria, boolean isCaseSens)` findByCriteria.
`Study`	`findByID(Integer studyID)` findByID.
`List<Study>`	`findByOwnerID(Integer registrationId)` findByOwnerID.
`Study`	`findBySWAccession(Integer swAccession)` findBySWAccession.
`List<Study>`	`findByTitle(String title)` findByTitle.
`List<File>`	`getFiles(Integer studyId)` getFiles.
`List<File>`	`getFiles(Integer studyId, String metaType)` getFiles.
`int`	`getStatusCount(Study study, WorkflowRunStatus status)` Count the number of workflow runs with the given status, under the given study
`Integer`	`insert(Registration registration, Study sequencerRun)` insert.
`Integer`	`insert(Study sequencerRun)` insert.
`boolean`	`isHasFile(Integer studyId)` isHasFile.
`boolean`	`isHasFile(Integer studyId, String metaType)` isHasFile.
`List<Study>`	`list()` list.
`List<Study>`	`list(Registration registration, Boolean isAcs)` list.
`List<Study>`	`listMyShared(Registration registration, Boolean isAcs)` listMyShared.
`List<Study>`	`listSharedWithMe(Registration registration, Boolean isAcs)` listSharedWithMe.
`List<Study>`	`listStudyHasFile(Registration registration, String metaType, Boolean iaAsc)` listStudyHasFile.
`void`	`merge(Study study)` merge.
`void`	`update(Registration registration, Study study)` update.
`void`	`update(Study sequencerRun)` update.
`Study`	`updateDetached(Registration registration, Study study)` updateDetached.
`Study`	`updateDetached(Study study)` updateDetached.
`void`	`updateOwners(Integer swAccession)` updateOwners.

- Method Detail
  - insert
```
Integer insert(Study sequencerRun)
```
    insert.
    
    Parameters:
    sequencerRun - a Study object.
    
    Returns:
    a Integer object.
  - insert
```
Integer insert(Registration registration,
             Study sequencerRun)
```
    insert.
    
    Parameters:
    registration - a Registration object.
    sequencerRun - a Study object.
    
    Returns:
    a Integer object.
  - update
```
void update(Study sequencerRun)
```
    update.
    
    Parameters:
    sequencerRun - a Study object.
  - update
```
void update(Registration registration,
          Study study)
```
    update.
    
    Parameters:
    registration - a Registration object.
    study - a Study object.
  - delete
```
void delete(Study study)
```
    delete.
    
    Parameters:
    study - a Study object.
  - merge
```
void merge(Study study)
```
    merge.
    
    Parameters:
    study - a Study object.
  - list
```
List<Study> list(Registration registration,
               Boolean isAcs)
```
    list.
    
    Parameters:
    registration - a Registration object.
    isAcs - a Boolean object.
    
    Returns:
    a List object.
  - listMyShared
```
List<Study> listMyShared(Registration registration,
                       Boolean isAcs)
```
    listMyShared.
    
    Parameters:
    registration - a Registration object.
    isAcs - a Boolean object.
    
    Returns:
    a List object.
  - listSharedWithMe
```
List<Study> listSharedWithMe(Registration registration,
                           Boolean isAcs)
```
    listSharedWithMe.
    
    Parameters:
    registration - a Registration object.
    isAcs - a Boolean object.
    
    Returns:
    a List object.
  - findByTitle
```
List<Study> findByTitle(String title)
```
    findByTitle.
    
    Parameters:
    title - a String object.
    
    Returns:
    a Study object.
  - findByID
```
Study findByID(Integer studyID)
```
    findByID.
    
    Parameters:
    studyID - a Integer object.
    
    Returns:
    a Study object.
  - getFiles
```
List<File> getFiles(Integer studyId)
```
    getFiles.
    
    Parameters:
    studyId - a Integer object.
    
    Returns:
    a List object.
  - isHasFile
```
boolean isHasFile(Integer studyId)
```
    isHasFile.
    
    Parameters:
    studyId - a Integer object.
    
    Returns:
    a boolean.
  - getFiles
```
List<File> getFiles(Integer studyId,
                  String metaType)
```
    getFiles.
    
    Parameters:
    studyId - a Integer object.
    metaType - a String object.
    
    Returns:
    a List object.
  - isHasFile
```
boolean isHasFile(Integer studyId,
                String metaType)
```
    isHasFile.
    
    Parameters:
    studyId - a Integer object.
    metaType - a String object.
    
    Returns:
    a boolean.
  - listStudyHasFile
```
List<Study> listStudyHasFile(Registration registration,
                           String metaType,
                           Boolean iaAsc)
```
    listStudyHasFile.
    
    Parameters:
    registration - a Registration object.
    metaType - a String object.
    iaAsc - a Boolean object.
    
    Returns:
    a List object.
  - findBySWAccession
```
Study findBySWAccession(Integer swAccession)
```
    findBySWAccession.
    
    Parameters:
    swAccession - a Integer object.
    
    Returns:
    a Study object.
  - findByCriteria
```
List<Study> findByCriteria(String criteria,
                         boolean isCaseSens)
```
    findByCriteria.
    
    Parameters:
    criteria - a String object.
    isCaseSens - a boolean.
    
    Returns:
    a List object.
  - findByCriteria
```
List<Study> findByCriteria(String criteria)
```
    findByCriteria.
    
    Parameters:
    criteria - a String object.
    
    Returns:
    a List object.
  - updateDetached
```
Study updateDetached(Study study)
```
    updateDetached.
    
    Parameters:
    study - a Study object.
    
    Returns:
    a Study object.
  - updateDetached
```
Study updateDetached(Registration registration,
                   Study study)
```
    updateDetached.
    
    Parameters:
    registration - a Registration object.
    study - a Study object.
    
    Returns:
    a Study object.
  - findByOwnerID
```
List<Study> findByOwnerID(Integer registrationId)
```
    findByOwnerID.
    
    Parameters:
    registrationId - a Integer object.
    
    Returns:
    a List object.
  - updateOwners
```
void updateOwners(Integer swAccession)
```
    updateOwners.
    
    Parameters:
    swAccession - a Integer object.
  - list
```
List<Study> list()
```
    list.
    
    Returns:
    a List object.
  - getStatusCount
```
int getStatusCount(Study study,
                 WorkflowRunStatus status)
```
    Count the number of workflow runs with the given status, under the given study
    
    Parameters:
    study - the study
    status - the status of the workflow runs to count
    
    Returns:
    the count

Interface StudyDAO

Method Summary

Method Detail

insert

insert

update

update

delete

merge

list

listMyShared

listSharedWithMe

findByTitle

findByID

getFiles

isHasFile

getFiles

isHasFile

listStudyHasFile

findBySWAccession

findByCriteria

findByCriteria

updateDetached

updateDetached

findByOwnerID

updateOwners

list

getStatusCount