ProcessingService (SeqWare 1.1.2 API)

All Known Implementing Classes:

ProcessingServiceImpl
```
public interface ProcessingService
```
ProcessingService interface.

Version:

$Id: $Id

Author:

boconnor

Field Summary

Fields
Modifier and Type Field and Description

static String NAME
Constant NAME="processingService"

Fields
Modifier and Type	Field and Description
`static String`	`NAME` Constant `NAME="processingService"`

Method Summary

Methods
Modifier and Type	Method and Description
`void`	`delete(Processing processing, boolean deleteRealFiles)` delete.
`List<Processing>`	`findByCriteria(String criteria, boolean isCaseSens)` findByCriteria.
`Processing`	`findByID(Integer processingID)` findByID.
`Processing`	`findByIDOnlyWithRunningWR(Integer processingID)` findByIDOnlyWithRunningWR.
`List<Processing>`	`findByOwnerID(Integer registrationId)` findByOwnerID.
`Processing`	`findBySWAccession(Integer swAccession)` findBySWAccession.
`Set<Processing>`	`findFor(Sample sample)` findFor.
`Set<Processing>`	`findFor(Sample sample, WorkflowRun workflowRun)` findFor.
`List<File>`	`getFiles(Integer processingId)` getFiles.
`List<File>`	`getFiles(Integer processingId, String metaType)` getFiles.
`Integer`	`insert(Processing processing)` Inserts a new Processing and returns its sw_accession number.
`Integer`	`insert(Registration registration, Processing processing)` insert.
`void`	`insert(Registration registration, SequencerRun sequencerRun, Processing processing)` insert.
`void`	`insert(SequencerRun sequencerRun, Processing processing)` insert.
`boolean`	`isHasFile(Integer processingId)` isHasFile.
`List<Processing>`	`list()` list.
`void`	`setProcessingDAO(ProcessingDAO processingDAO)` setProcessingDAO.
`Set<Processing>`	`setWithHasFile(Set<Processing> list)` setWithHasFile.
`Set<Processing>`	`setWithHasFile(Set<Processing> list, String metaType)` setWithHasFile.
`void`	`update(Processing processing)` update.
`void`	`update(Registration registration, Processing processing)` update.
`Processing`	`updateDetached(Processing processing)` updateDetached.
`Processing`	`updateDetached(Registration registration, Processing processing)` updateDetached.

- Field Detail
  - NAME
```
static final String NAME
```
    Constant NAME="processingService"
    
    See Also:
    Constant Field Values
- Method Detail
  - setProcessingDAO
```
void setProcessingDAO(ProcessingDAO processingDAO)
```
    setProcessingDAO.
    
    Parameters:
    processingDAO - a ProcessingDAO object.
  - insert
```
void insert(SequencerRun sequencerRun,
          Processing processing)
```
    insert.
    
    Parameters:
    sequencerRun - a SequencerRun object.
    processing - a Processing object.
  - insert
```
void insert(Registration registration,
          SequencerRun sequencerRun,
          Processing processing)
```
    insert.
    
    Parameters:
    registration - a Registration object.
    sequencerRun - a SequencerRun object.
    processing - a Processing object.
  - insert
```
Integer insert(Processing processing)
```
    Inserts a new Processing and returns its sw_accession number.
    
    Parameters:
    processing - Processing to be inserted.
    
    Returns:
    The SeqWare Accession number for the newly inserted Processing.
  - insert
```
Integer insert(Registration registration,
             Processing processing)
```
    insert.
    
    Parameters:
    registration - a Registration object.
    processing - a Processing object.
    
    Returns:
    a Integer object.
  - update
```
void update(Registration registration,
          Processing processing)
```
    update.
    
    Parameters:
    registration - a Registration object.
    processing - a Processing object.
  - update
```
void update(Processing processing)
```
    update.
    
    Parameters:
    processing - a Processing object.
  - delete
```
void delete(Processing processing,
          boolean deleteRealFiles)
```
    delete.
    
    Parameters:
    processing -
    deleteRealFiles -
  - findByID
```
Processing findByID(Integer processingID)
```
    findByID.
    
    Parameters:
    processingID - a Integer object.
    
    Returns:
    a Processing object.
  - findByIDOnlyWithRunningWR
```
Processing findByIDOnlyWithRunningWR(Integer processingID)
```
    findByIDOnlyWithRunningWR.
    
    Parameters:
    processingID - a Integer object.
    
    Returns:
    a Processing object.
  - findBySWAccession
```
Processing findBySWAccession(Integer swAccession)
```
    findBySWAccession.
    
    Parameters:
    swAccession - a Integer object.
    
    Returns:
    a Processing object.
  - getFiles
```
List<File> getFiles(Integer processingId)
```
    getFiles.
    
    Parameters:
    processingId - a Integer object.
    
    Returns:
    a List object.
  - getFiles
```
List<File> getFiles(Integer processingId,
                  String metaType)
```
    getFiles.
    
    Parameters:
    processingId - a Integer object.
    metaType - a String object.
    
    Returns:
    a List object.
  - isHasFile
```
boolean isHasFile(Integer processingId)
```
    isHasFile.
    
    Parameters:
    processingId - a Integer object.
    
    Returns:
    a boolean.
  - setWithHasFile
```
Set<Processing> setWithHasFile(Set<Processing> list)
```
    setWithHasFile.
    
    Parameters:
    list - a Set object.
    
    Returns:
    a Set object.
  - setWithHasFile
```
Set<Processing> setWithHasFile(Set<Processing> list,
                             String metaType)
```
    setWithHasFile.
    
    Parameters:
    list - a Set object.
    metaType - a String object.
    
    Returns:
    a Set object.
  - updateDetached
```
Processing updateDetached(Processing processing)
```
    updateDetached.
    
    Parameters:
    processing - a Processing object.
    
    Returns:
    a Processing object.
  - updateDetached
```
Processing updateDetached(Registration registration,
                        Processing processing)
```
    updateDetached.
    
    Parameters:
    registration - a Registration object.
    processing - a Processing object.
    
    Returns:
    a Processing object.
  - findByOwnerID
```
List<Processing> findByOwnerID(Integer registrationId)
```
    findByOwnerID.
    
    Parameters:
    registrationId - a Integer object.
    
    Returns:
    a List object.
  - findByCriteria
```
List<Processing> findByCriteria(String criteria,
                              boolean isCaseSens)
```
    findByCriteria.
    
    Parameters:
    criteria - a String object.
    isCaseSens - a boolean.
    
    Returns:
    a List object.
  - findFor
```
Set<Processing> findFor(Sample sample,
                      WorkflowRun workflowRun)
```
    findFor.
    
    Parameters:
    sample - a Sample object.
    workflowRun - a WorkflowRun object.
    
    Returns:
    a Set object.
  - findFor
```
Set<Processing> findFor(Sample sample)
```
    findFor.
    
    Parameters:
    sample - a Sample object.
    
    Returns:
    a Set object.
  - list
```
List<Processing> list()
```
    list.
    
    Returns:
    a List object.

Interface ProcessingService

Field Summary

Method Summary

Field Detail

NAME

Method Detail

setProcessingDAO

insert

insert

insert

insert

update

update

delete

findByID

findByIDOnlyWithRunningWR

findBySWAccession

getFiles

getFiles

isHasFile

setWithHasFile

setWithHasFile

updateDetached

updateDetached

findByOwnerID

findByCriteria

findFor

findFor

list