| Package | Description |
|---|---|
| net.sourceforge.seqware.common.business |
Looks like auto-generated classes for Hibernate.
|
| net.sourceforge.seqware.common.business.impl |
Looks like auto-generated implementation for Hibernate classes.
|
| net.sourceforge.seqware.common.dao |
More hibernate auto-generated.
|
| net.sourceforge.seqware.common.dao.hibernate |
More hibernate auto-generated.
|
| net.sourceforge.seqware.common.hibernate |
Looks like utility classes for navigating the metadb.
|
| net.sourceforge.seqware.common.hibernate.reports |
A row of the workflow run report.
|
| net.sourceforge.seqware.common.metadata |
Critical classes that effectively convert API calls into actions against the DB and web service.
|
| net.sourceforge.seqware.common.model |
Hibernate model classes for the metadb.
|
| net.sourceforge.seqware.common.model.lists |
Looks like various container classes for XML serialization.
|
| net.sourceforge.solexatools.util |
Portal stuff, to be assessed.
|
| net.sourceforge.solexatools.validation |
Portal stuff, to be assessed.
|
| net.sourceforge.solexatools.webapp.controller |
Portal stuff, to be assessed.
|
| net.sourceforge.solexatools.webapp.metamodel |
Portal stuff, to be assessed.
|
| Modifier and Type | Method and Description |
|---|---|
Sample |
SampleService.findByID(Integer id)
findByID.
|
Sample |
SampleService.findByName(String name)
findByName.
|
Sample |
SampleService.findBySWAccession(Integer swAccession)
findBySWAccession.
|
Sample |
LibraryService.findBySWAccession(Long swAccession)
Returns library matching given SeqWare Accession.
|
Sample |
SampleService.findByTitle(String title)
findByTitle.
|
Sample |
SampleService.getRootSample(Sample childSample)
getRootSample.
|
Sample |
SampleService.updateDetached(Registration registration,
Sample sample)
updateDetached.
|
Sample |
SampleService.updateDetached(Sample sample)
updateDetached.
|
| Modifier and Type | Method and Description |
|---|---|
List<Sample> |
SampleService.findByCriteria(String criteria,
boolean isCaseSens)
findByCriteria.
|
List<Sample> |
SampleService.findByOwnerID(Integer registrationId)
findByOwnerID.
|
List<Sample> |
SampleReportService.getChildSamples(Study study)
getChildSamples.
|
List<Sample> |
LibraryService.getLibraries()
Returns a complete list of libraries.
|
List<Sample> |
LibraryService.getLibraries(Map<String,String> attributes)
Returns a list of libraries that match all attributes provided in the give attributes Map.
|
List<Sample> |
SampleService.getRootSamples(Study study)
getRootSamples.
|
List<Sample> |
SampleService.list()
list.
|
List<Sample> |
SampleService.listComplete()
listComplete.
|
List<Sample> |
SampleService.listIncomplete()
listIncomplete.
|
List<Sample> |
SampleService.listSample(Registration registration)
listSample.
|
SortedSet<Sample> |
SampleService.listWithHasFile(Integer expId,
SortedSet<Sample> list,
String metaType)
listWithHasFile.
|
List<Sample> |
SampleService.matchName(String name) |
SortedSet<Sample> |
SampleService.setWithHasFile(Integer expId,
SortedSet<Sample> list)
setWithHasFile.
|
| Modifier and Type | Method and Description |
|---|---|
void |
SampleService.delete(Sample sample,
boolean deleteRealFiles)
delete.
|
ProcessingSamples |
ProcessingSamplesService.findByProcessingSample(Processing processing,
Sample sample)
findByProcessingSample.
|
Set<Processing> |
ProcessingService.findFor(Sample sample)
findFor.
|
Set<Processing> |
ProcessingService.findFor(Sample sample,
WorkflowRun workflowRun)
findFor.
|
Set<WorkflowRun> |
WorkflowRunService.findRunsForSample(Sample sample)
Find all the workflow runs for the specific sample.
|
Sample |
SampleService.getRootSample(Sample childSample)
getRootSample.
|
SampleReportService.Status |
SampleReportService.getStatus(Study study,
Sample sample,
IUS ius,
Lane lane,
SequencerRun seqRun,
Workflow workflow)
getStatus.
|
SampleReportService.Status |
SampleReportService.getStatus(Study study,
Sample childSample,
Workflow workflow)
getStatus.
|
Integer |
SampleService.insert(Registration registration,
Sample sample)
insert.
|
Integer |
SampleService.insert(Sample sample)
insert.
|
Integer |
LaneService.insertLane(Registration registration,
Sample sample,
UploadSequence uploadSequence,
FileType fileType)
insertLane.
|
void |
SampleService.update(Registration registration,
Sample sample)
update.
|
void |
SampleService.update(Sample sample)
update.
|
Sample |
SampleService.updateDetached(Registration registration,
Sample sample)
updateDetached.
|
Sample |
SampleService.updateDetached(Sample sample)
updateDetached.
|
void |
FileUploadService.uploadFile(Sample sample,
UploadFile uploadFile,
FileType fileType,
Registration registration)
uploadFile.
|
| Modifier and Type | Method and Description |
|---|---|
SortedSet<Sample> |
SampleService.listWithHasFile(Integer expId,
SortedSet<Sample> list,
String metaType)
listWithHasFile.
|
SortedSet<Sample> |
SampleService.setWithHasFile(Integer expId,
SortedSet<Sample> list)
setWithHasFile.
|
| Modifier and Type | Method and Description |
|---|---|
Sample |
SampleServiceImpl.findByID(Integer sampleId)
findByID.
|
Sample |
SampleServiceImpl.findByName(String name)
findByName.
|
Sample |
SampleServiceImpl.findBySWAccession(Integer swAccession)
findBySWAccession.
|
Sample |
LibraryServiceImpl.findBySWAccession(Long swAccession)
Returns library matching given SeqWare Accession.
|
Sample |
SampleServiceImpl.findByTitle(String title)
findByTitle.
|
Sample |
SampleServiceImpl.getRootSample(Sample childSample)
getRootSample.
|
Sample |
SampleServiceImpl.updateDetached(Registration registration,
Sample sample)
updateDetached.
|
Sample |
SampleServiceImpl.updateDetached(Sample sample)
updateDetached.
|
| Modifier and Type | Method and Description |
|---|---|
List<Sample> |
SampleServiceImpl.findByCriteria(String criteria,
boolean isCaseSens)
findByCriteria.
|
List<Sample> |
SampleServiceImpl.findByOwnerID(Integer registrationId)
findByOwnerID.
|
List<Sample> |
SampleReportServiceImpl.getChildSamples(Study study)
getChildSamples.
|
List<Sample> |
LibraryServiceImpl.getLibraries()
Returns a complete list of libraries.
|
List<Sample> |
LibraryServiceImpl.getLibraries(Map<String,String> attributes)
Returns a list of libraries that match all attributes provided in the give attributes Map.
|
List<Sample> |
SampleServiceImpl.getRootSamples(Study study)
getRootSamples.
|
List<Sample> |
SampleServiceImpl.list()
list.
|
List<Sample> |
SampleServiceImpl.listComplete()
listComplete.
|
List<Sample> |
SampleServiceImpl.listIncomplete()
listIncomplete.
|
List<Sample> |
SampleServiceImpl.listSample(Registration registration)
listSample.
|
SortedSet<Sample> |
SampleServiceImpl.listWithHasFile(Integer expId,
SortedSet<Sample> list,
String metaType)
listWithHasFile.
|
List<Sample> |
SampleServiceImpl.matchName(String name) |
SortedSet<Sample> |
SampleServiceImpl.setWithHasFile(Integer expId,
SortedSet<Sample> list)
setWithHasFile.
|
| Modifier and Type | Method and Description |
|---|---|
void |
SampleServiceImpl.delete(Sample sample,
boolean deleteRealFiles)
delete.
|
ProcessingSamples |
ProcessingSamplesServiceImpl.findByProcessingSample(Processing processing,
Sample sample)
findByProcessingSample.
|
Set<Processing> |
ProcessingServiceImpl.findFor(Sample sample)
findFor.
|
Set<Processing> |
ProcessingServiceImpl.findFor(Sample sample,
WorkflowRun workflowRun)
findFor.
|
Set<WorkflowRun> |
WorkflowRunServiceImpl.findRunsForSample(Sample sample)
Find all the workflow runs for the specific sample.
|
Sample |
SampleServiceImpl.getRootSample(Sample childSample)
getRootSample.
|
SampleReportService.Status |
SampleReportServiceImpl.getStatus(Study study,
Sample sample,
IUS ius,
Lane lane,
SequencerRun seqRun,
Workflow workflow)
getStatus.
|
SampleReportService.Status |
SampleReportServiceImpl.getStatus(Study study,
Sample childSample,
Workflow workflow)
getStatus.
|
Integer |
SampleServiceImpl.insert(Registration registration,
Sample sample)
insert.
|
Integer |
SampleServiceImpl.insert(Sample sample)
insert.
|
Integer |
LaneServiceImpl.insertLane(Registration registration,
Sample sample,
UploadSequence uploadSeqence,
FileType fileType)
insertLane.
|
void |
SampleServiceImpl.update(Registration registration,
Sample sample)
update.
|
void |
SampleServiceImpl.update(Sample sample)
update.
|
Sample |
SampleServiceImpl.updateDetached(Registration registration,
Sample sample)
updateDetached.
|
Sample |
SampleServiceImpl.updateDetached(Sample sample)
updateDetached.
|
Integer |
LaneServiceImpl.updateLane(Sample sample,
org.springframework.web.multipart.MultipartFile fileOne,
org.springframework.web.multipart.MultipartFile fileTwo,
String typeFile,
String folderStore,
Registration registration)
updateLane.
|
void |
FileUploadServiceImpl.uploadFile(Sample sample,
UploadFile uploadFile,
FileType fileType,
Registration registration)
uploadFile.
|
| Modifier and Type | Method and Description |
|---|---|
SortedSet<Sample> |
SampleServiceImpl.listWithHasFile(Integer expId,
SortedSet<Sample> list,
String metaType)
listWithHasFile.
|
SortedSet<Sample> |
SampleServiceImpl.setWithHasFile(Integer expId,
SortedSet<Sample> list)
setWithHasFile.
|
| Modifier and Type | Method and Description |
|---|---|
Sample |
SampleDAO.findByID(Integer sampleId)
findByID.
|
Sample |
SampleDAO.findByName(String name)
findByName.
|
Sample |
SampleDAO.findBySWAccession(Integer swAccession)
findBySWAccession.
|
Sample |
LibraryDAO.findBySWAccession(Long swAccession)
Returns library matching given SeqWare Accesssion.
|
Sample |
SampleDAO.findByTitle(String title)
findByTitle.
|
Sample |
SampleDAO.getRootSample(Sample sample)
getRootSample.
|
Sample |
SampleDAO.updateDetached(Registration registration,
Sample sample)
updateDetached.
|
Sample |
SampleDAO.updateDetached(Sample sample)
updateDetached.
|
| Modifier and Type | Method and Description |
|---|---|
List<Sample> |
SampleDAO.findByCriteria(String criteria,
boolean isCaseSens)
findByCriteria.
|
List<Sample> |
SampleDAO.findByOwnerID(Integer registrationId)
findByOwnerID.
|
List<Sample> |
SampleReportDAO.getChildSamples(Study study)
getChildSamples.
|
List<Sample> |
LibraryDAO.getLibraries()
Returns a complete list of libraries.
|
List<Sample> |
LibraryDAO.getLibraries(String attributeName,
String attributeValue)
Returns list of libraries that contain the attribute attributeName=attributeValue.
|
List<Sample> |
SampleDAO.getRootSamples(Study study)
getRootSamples.
|
List<Sample> |
SampleDAO.list()
list.
|
List<Sample> |
SampleDAO.listComplete()
listComplete.
|
List<Sample> |
SampleDAO.listIncomplete()
listIncomplete.
|
List<Sample> |
SampleDAO.listSample(Registration registration)
listSample.
|
List<Sample> |
SampleDAO.matchName(String name)
findByName.
|
| Modifier and Type | Method and Description |
|---|---|
void |
SampleDAO.delete(Sample sample)
delete.
|
List<SampleAttribute> |
SampleAttributeDAO.findAll(Sample sample)
findAll.
|
ProcessingSamples |
ProcessingSamplesDAO.findByProcessingSample(Processing processing,
Sample sample)
findByProcessingSample.
|
Sample |
SampleDAO.getRootSample(Sample sample)
getRootSample.
|
SampleReportService.Status |
SampleReportDAO.getStatus(Study study,
Sample sample,
IUS ius,
Lane lane,
SequencerRun seqRun,
Workflow workflow)
getStatus.
|
SampleReportService.Status |
SampleReportDAO.getStatus(Study study,
Sample childSample,
Workflow workflow)
getStatus.
|
Integer |
SampleDAO.insert(Registration registration,
Sample sample)
insert.
|
Integer |
SampleDAO.insert(Sample sample)
insert.
|
void |
SampleDAO.update(Registration registration,
Sample sample)
update.
|
void |
SampleDAO.update(Sample sample)
update.
|
Sample |
SampleDAO.updateDetached(Registration registration,
Sample sample)
updateDetached.
|
Sample |
SampleDAO.updateDetached(Sample sample)
updateDetached.
|
| Modifier and Type | Method and Description |
|---|---|
Sample |
SampleDAOHibernate.findByID(Integer id)
findByID.
|
Sample |
SampleDAOHibernate.findByName(String name)
findByName.
|
Sample |
SampleDAOHibernate.findBySWAccession(Integer swAccession)
findBySWAccession.
|
Sample |
LibraryDAOHibernate.findBySWAccession(Long swAccession)
Returns library matching given SeqWare Accesssion.
|
Sample |
SampleDAOHibernate.findByTitle(String title)
findByTitle.
|
Sample |
SampleDAOHibernate.getRootSample(Sample sample)
getRootSample.
|
Sample |
SampleDAOHibernate.updateDetached(Registration registration,
Sample sample)
updateDetached.
|
Sample |
SampleDAOHibernate.updateDetached(Sample sample)
updateDetached.
|
| Modifier and Type | Method and Description |
|---|---|
List<Sample> |
SampleDAOHibernate.findByCriteria(String criteria,
boolean isCaseSens)
findByCriteria.
|
List<Sample> |
SampleDAOHibernate.findByOwnerID(Integer registrationId)
findByOwnerID.
|
List<Sample> |
SampleReportDAOHibernate.getChildSamples(Study study)
getChildSamples.
|
List<Sample> |
LibraryDAOHibernate.getLibraries()
Returns a complete list of libraries.
|
List<Sample> |
LibraryDAOHibernate.getLibraries(String attributeName,
String attributeValue)
Returns list of libraries that contain the attribute attributeName=attributeValue.
|
List<Sample> |
SampleDAOHibernate.getRootSamples(Study study)
getRootSamples.
|
List<Sample> |
SampleDAOHibernate.list()
list.
|
List<Sample> |
SampleDAOHibernate.listComplete()
listComplete.
|
List<Sample> |
SampleDAOHibernate.listIncomplete()
listIncomplete.
|
List<Sample> |
SampleDAOHibernate.listSample(Registration registaration)
listSample.
|
List<Sample> |
SampleDAOHibernate.matchName(String name)
findByName.
|
| Modifier and Type | Method and Description |
|---|---|
void |
SampleDAOHibernate.delete(Sample sample)
delete.
|
List<SampleAttribute> |
SampleAttributeDAOHibernate.findAll(Sample sample)
findAll.
|
ProcessingSamples |
ProcessingSamplesDAOHibernate.findByProcessingSample(Processing processing,
Sample sample)
findByProcessingSample.
|
Sample |
SampleDAOHibernate.getRootSample(Sample sample)
getRootSample.
|
SampleReportService.Status |
SampleReportDAOHibernate.getStatus(Study study,
Sample sample,
IUS ius,
Lane lane,
SequencerRun seqRun,
Workflow workflow)
getStatus.
|
SampleReportService.Status |
SampleReportDAOHibernate.getStatus(Study study,
Sample childSample,
Workflow workflow)
getStatus.
|
Integer |
SampleDAOHibernate.insert(Registration registration,
Sample sample)
insert.
|
Integer |
SampleDAOHibernate.insert(Sample sample)
insert.
|
void |
SampleDAOHibernate.update(Registration registration,
Sample sample)
update.
|
void |
SampleDAOHibernate.update(Sample sample)
update.
|
Sample |
SampleDAOHibernate.updateDetached(Registration registration,
Sample sample)
updateDetached.
|
Sample |
SampleDAOHibernate.updateDetached(Sample sample)
updateDetached.
|
| Modifier and Type | Method and Description |
|---|---|
Set<Sample> |
CheckForCycles.checkSample(Sample sample)
checkSample.
|
| Modifier and Type | Method and Description |
|---|---|
Set<Sample> |
CheckForCycles.checkSample(Sample sample)
checkSample.
|
| Modifier and Type | Method and Description |
|---|---|
Collection<Sample> |
WorkflowRunReportRow.getIdentitySamples()
Getter for the field
identitySamples. |
Collection<Sample> |
WorkflowRunReportRow.getLibrarySamples()
Getter for the field
librarySamples. |
| Modifier and Type | Method and Description |
|---|---|
void |
WorkflowRunReportRow.setIdentitySamples(Collection<Sample> identitySamples)
Setter for the field
identitySamples. |
void |
WorkflowRunReportRow.setLibrarySamples(Collection<Sample> librarySamples)
Setter for the field
librarySamples. |
| Modifier and Type | Method and Description |
|---|---|
Sample |
MetadataWS.LowLevel.existsSample(String searchString) |
Sample |
MetadataWS.getSample(int swAccession) |
Sample |
Metadata.getSample(int swAccession)
Get sample by swa
|
Sample |
MetadataNoConnection.getSample(int swAccession) |
Sample |
MetadataDB.getSample(int swAccession) |
Sample |
MetadataInMemory.getSample(int swAccession) |
| Modifier and Type | Method and Description |
|---|---|
List<Sample> |
MetadataWS.getChildSamplesFrom(int parentSampleAccession) |
List<Sample> |
Metadata.getChildSamplesFrom(int parentSampleAccession)
Get the child samples of a parent sample.
|
List<Sample> |
MetadataNoConnection.getChildSamplesFrom(int parentSampleAccession) |
List<Sample> |
MetadataDB.getChildSamplesFrom(int parentSampleAccession) |
List<Sample> |
MetadataInMemory.getChildSamplesFrom(int parentSampleAccession) |
List<Sample> |
MetadataWS.getParentSamplesFrom(int childSampleAccession) |
List<Sample> |
Metadata.getParentSamplesFrom(int childSampleAccession)
Get the parent samples of a sample.
|
List<Sample> |
MetadataNoConnection.getParentSamplesFrom(int childSampleAccession) |
List<Sample> |
MetadataDB.getParentSamplesFrom(int childSampleAccession) |
List<Sample> |
MetadataInMemory.getParentSamplesFrom(int childSampleAccession) |
List<Sample> |
MetadataWS.getSampleByName(String sampleName) |
List<Sample> |
Metadata.getSampleByName(String name) |
List<Sample> |
MetadataNoConnection.getSampleByName(String name) |
List<Sample> |
MetadataDB.getSampleByName(String name) |
List<Sample> |
MetadataInMemory.getSampleByName(String name) |
List<Sample> |
MetadataWS.getSamplesFrom(int experimentAccession) |
List<Sample> |
Metadata.getSamplesFrom(int experimentAccession)
Get the samples from an experiment.
|
List<Sample> |
MetadataNoConnection.getSamplesFrom(int experimentAccession) |
List<Sample> |
MetadataDB.getSamplesFrom(int experimentAccession) |
List<Sample> |
MetadataInMemory.getSamplesFrom(int experimentAccession) |
| Modifier and Type | Method and Description |
|---|---|
Sample |
SampleReportRow.getChildSample()
Getter for the field
childSample. |
Sample |
FileReportRow.getChildSample()
Getter for the field
childSample. |
Sample |
SequencerRunReportId.getChildSample()
Getter for the field
childSample. |
Sample |
WorkflowParam.getSample()
Getter for the field
sample. |
Sample |
SampleAttribute.getSample()
Getter for the field
sample. |
Sample |
ProcessingSamples.getSample()
Getter for the field
sample. |
Sample |
Lane.getSample()
Getter for the field
sample. |
Sample |
UploadSequence.getSample()
Getter for the field
sample. |
Sample |
IUS.getSample()
Getter for the field
sample. |
Sample |
FileReportRow.getSample()
Getter for the field
sample. |
| Modifier and Type | Method and Description |
|---|---|
Set<Sample> |
Sample.getChildren()
Getter for the field
children. |
Set<Sample> |
Sample.getParents()
Getter for the field
parents. |
SortedSet<Sample> |
WorkflowRun.getSamples()
Getter for the field
samples. |
SortedSet<Sample> |
Lane.getSamples()
getSamples.
|
SortedSet<Sample> |
Experiment.getSamples()
Getter for the field
samples. |
Set<Sample> |
Processing.getSamples()
Getter for the field
samples. |
| Modifier and Type | Method and Description |
|---|---|
int |
Sample.compareTo(Sample that) |
void |
SampleAttribute.setAttributeParent(Sample parent) |
void |
SampleReportRow.setChildSample(Sample childSample)
Setter for the field
childSample. |
void |
FileReportRow.setChildSample(Sample childSample)
Setter for the field
childSample. |
void |
SequencerRunReportId.setChildSample(Sample childSample)
Setter for the field
childSample. |
void |
WorkflowParam.setSample(Sample sample)
Setter for the field
sample. |
void |
SampleAttribute.setSample(Sample sample)
Setter for the field
sample. |
void |
ProcessingSamples.setSample(Sample sample)
Setter for the field
sample. |
void |
Lane.setSample(Sample sample)
Setter for the field
sample. |
void |
UploadSequence.setSample(Sample sample)
Setter for the field
sample. |
void |
IUS.setSample(Sample sample)
Setter for the field
sample. |
void |
FileReportRow.setSample(Sample sample)
Setter for the field
sample. |
| Modifier and Type | Method and Description |
|---|---|
void |
Sample.setChildren(Set<Sample> children)
Setter for the field
children. |
void |
Sample.setParents(Set<Sample> parents)
Setter for the field
parents. |
void |
Processing.setSamples(Set<Sample> samples)
Setter for the field
samples. |
void |
WorkflowRun.setSamples(SortedSet<Sample> samples)
Setter for the field
samples. |
void |
Experiment.setSamples(SortedSet<Sample> samples)
Setter for the field
samples. |
| Constructor and Description |
|---|
ProcessingSamples(int processingSamplesId,
Processing processing,
Sample sample)
Constructor for ProcessingSamples.
|
ProcessingSamples(int processingSamplesId,
Processing processing,
Sample sample,
String description,
String label,
String url,
Integer swAccession)
Constructor for ProcessingSamples.
|
SampleAttribute(int sampleAttributeId,
Sample sample,
String tag,
String value)
Constructor for SampleAttribute.
|
SampleAttribute(int sampleAttributeId,
Sample sample,
String tag,
String value,
String units)
Constructor for SampleAttribute.
|
| Modifier and Type | Field and Description |
|---|---|
protected List<Sample> |
SampleList.tList |
| Modifier and Type | Method and Description |
|---|---|
List<Sample> |
SampleList.getList()
getList.
|
| Modifier and Type | Method and Description |
|---|---|
void |
SampleList.add(Sample ex)
add.
|
| Modifier and Type | Method and Description |
|---|---|
void |
SampleList.setList(List<Sample> list)
setList.
|
| Modifier and Type | Method and Description |
|---|---|
static SortedSet<Sample> |
BulkUtil.selectSampleNode(List<String> selectedIds,
Experiment experiment)
selectSampleNode.
|
| Modifier and Type | Method and Description |
|---|---|
static String |
TreeNodeHtmlUtil.getAllHtml(Sample sample,
Registration registration,
Integer openingNodeId,
String treeType)
getAllHtml.
|
static String |
WorkflowRunHtmlUtil.getHtml(Sample sample,
WorkflowRun workflowRun,
Registration registration,
String typeTree)
getHtml.
|
static String |
TreeNodeHtmlUtil.getSampleHtml(Sample sample,
Registration registration,
Integer openingNodeId)
getSampleHtml.
|
static String |
NodeHtmlUtil.getSampleHtml(Sample sample,
Registration registration,
String typeTree,
String openingNodeId,
boolean isEnd,
boolean isOpenProc,
String treeType)
getSampleHtml.
|
static Study |
FindRootUtil.getStudy(Sample sample)
getStudy.
|
static int |
TagUtils.processingsCount(Sample sample)
Returns count of the Sample related Workflow Runs.
|
static SortedSet<IUS> |
BulkUtil.selectIUSNode(List<String> selectedIds,
Sample sample)
selectIUSNode.
|
static void |
SetNodeIdInSession.setSampleForStudy(Sample sample,
javax.servlet.http.HttpServletRequest request)
setSampleForStudy.
|
static void |
SetNodeIdInSession.setSampleForWorkflowRun(Sample sample,
javax.servlet.http.HttpServletRequest request)
setSampleForWorkflowRun.
|
static void |
SetNodeIdInSession.setSampleForWorkflowRunRunning(Sample sample,
javax.servlet.http.HttpServletRequest request)
setSampleForWorkflowRunRunning.
|
static int |
TagUtils.wfCount(Sample sample)
Returns count of the Sample related Workflow Runs.
|
| Modifier and Type | Method and Description |
|---|---|
void |
SampleValidator.validateExpectedNumberReads(Sample sample,
org.springframework.validation.Errors errors)
validateExpectedNumberReads.
|
void |
SampleValidator.validateExpectedNumberRuns(Sample sample,
org.springframework.validation.Errors errors)
validateExpectedNumberRuns.
|
| Modifier and Type | Method and Description |
|---|---|
org.springframework.web.servlet.ModelAndView |
SampleController.handleCancel(javax.servlet.http.HttpServletRequest request,
javax.servlet.http.HttpServletResponse response,
Sample command)
Handles the user's request to cancel the study or the study update page.
|
org.springframework.web.servlet.ModelAndView |
SampleController.handleDelete(javax.servlet.http.HttpServletRequest request,
javax.servlet.http.HttpServletResponse response,
Sample command)
Handles the user's request to delete their sample.
|
org.springframework.web.servlet.ModelAndView |
SampleController.handleReset(javax.servlet.http.HttpServletRequest request,
javax.servlet.http.HttpServletResponse response,
Sample command)
Handles the user's request to reset the sample page during a new or update sample.
|
org.springframework.web.servlet.ModelAndView |
SampleController.handleSubmit(javax.servlet.http.HttpServletRequest request,
javax.servlet.http.HttpServletResponse response,
Sample command)
Handles the user's request to submit a new study.
|
org.springframework.web.servlet.ModelAndView |
SampleController.handleUpdate(javax.servlet.http.HttpServletRequest request,
javax.servlet.http.HttpServletResponse response,
Sample command)
Handles the user's request to update their study.
|
| Modifier and Type | Method and Description |
|---|---|
Sample |
StudySampleReportLineItem.getChildSample()
Getter for the field
childSample. |
Sample |
StudySampleReportFileLineItem.getChildSample()
Getter for the field
childSample. |
Sample |
StudySampleReportFileLineItem.getRootSample()
Getter for the field
rootSample. |
Sample |
StudySampleReportLineItem.getSample()
Getter for the field
sample. |
Sample |
StudySampleReportLineItem.getSortKeySample()
Getter for the field
sortKeySample. |
| Modifier and Type | Method and Description |
|---|---|
void |
StudySampleReportLineItem.setChildSample(Sample childSample)
Setter for the field
childSample. |
void |
StudySampleReportFileLineItem.setChildSample(Sample childSample)
Setter for the field
childSample. |
void |
StudySampleReportFileLineItem.setRootSample(Sample rootSample)
Setter for the field
rootSample. |
void |
StudySampleReportLineItem.setSample(Sample sample)
Setter for the field
sample. |
void |
StudySampleReportLineItem.setSortKeySample(Sample sortKeySample)
Setter for the field
sortKeySample. |
| Constructor and Description |
|---|
SampleDetailsWorkflowLineItems(Sample sample)
Constructor for SampleDetailsWorkflowLineItems.
|
StudySampleReportFileLineItem(Sample root,
Sample child,
IUS ius,
File file)
Constructor for StudySampleReportFileLineItem.
|
StudySampleReportLineItem(Sample sample,
Sample child,
String[] statuses)
Constructor for StudySampleReportLineItem.
|
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