Method Detail

• getStatusesForStudy

  List<SampleReportService.Status> getStatusesForStudy(Study study)

  getStatusesForStudy.

  Parameters:

  study - a Study object.

  Returns:

  a List object.

• getWorkflowsForStudy

  List<Workflow> getWorkflowsForStudy(Study study)

  getWorkflowsForStudy.

  Parameters:

  study - a Study object.

  Returns:

  a List object.

• countOfStatus

  int countOfStatus(Study study,
                  SampleReportService.Status status)

  countOfStatus.

  Parameters:

  study - a Study object.

  status - a String object.

  Returns:

  a int.

• countOfStatus

  int countOfStatus(SequencerRun seqRun,
                  SampleReportService.Status status)

  countOfStatus.

  Parameters:

  seqRun - a SequencerRun object.

  status - a String object.

  Returns:

  a int.

• getChildSamples

  List<Sample> getChildSamples(Study study)

  getChildSamples.

  Parameters:

  study - a Study object.

  Returns:

  a List object.

• getStatus

  SampleReportService.Status getStatus(Study study,
                                     Sample childSample,
                                     Workflow workflow)

  getStatus.

  Parameters:

  study - a Study object.

  childSample - a Sample object.

  workflow - a Workflow object.

  Returns:

  a String object.

• getStatus

  SampleReportService.Status getStatus(Study study,
                                     Sample sample,
                                     IUS ius,
                                     Lane lane,
                                     SequencerRun seqRun,
                                     Workflow workflow)

  getStatus.

  Parameters:

  study - a Study object.

  sample - a Sample object.

  ius - a IUS object.

  lane - a Lane object.

  seqRun - a SequencerRun object.

  workflow - a Workflow object.

  Returns:

  a String object.

• countOfStatus

  int countOfStatus(Study study,
                  Workflow workflow,
                  SampleReportService.Status status)

  countOfStatus.

  Parameters:

  study - a Study object.

  workflow - a Workflow object.

  status - a String object.

  Returns:

  a int.

• getStatusesForWorkflow

  List<SampleReportService.Status> getStatusesForWorkflow(Study study,
                                                        Workflow workflow)

  getStatusesForWorkflow.

  Parameters:

  study - a Study object.

  workflow - a Workflow object.

  Returns:

  a List object.

• getRowsForSequencerRun

  List<SampleReportRow> getRowsForSequencerRun(SequencerRun sr)

  getRowsForSequencerRun.

  Parameters:

  sr - a SequencerRun object.

  Returns:

  a List object.

• getRowsWithSequencerRuns

  List<SampleReportRow> getRowsWithSequencerRuns()

  getRowsWithSequencerRuns.

  Returns:

  a List object.

• getStatusesForSequencerRun

  List<SampleReportService.Status> getStatusesForSequencerRun(SequencerRun seqRun)

  getStatusesForSequencerRun.

  Parameters:

  seqRun - a SequencerRun object.

  Returns:

  a List object.

• getStatusesForWorkflow

  List<SampleReportService.Status> getStatusesForWorkflow(SequencerRun seqRun,
                                                        Workflow workflow)

  getStatusesForWorkflow.

  Parameters:

  seqRun - a SequencerRun object.

  workflow - a Workflow object.

  Returns:

  a List object.

• countOfStatus

  int countOfStatus(SequencerRun seqRun,
                  Workflow workflow,
                  SampleReportService.Status status)

  countOfStatus.

  Parameters:

  seqRun - a SequencerRun object.

  workflow - a Workflow object.

  status - a String object.

  Returns:

  a int.

• getWorkflows

  List<Workflow> getWorkflows(SequencerRun seqRun)

  getWorkflows.

  Parameters:

  seqRun - a SequencerRun object.

  Returns:

  a List object.

• getSequencerRunReportIds

  List<SequencerRunReportId> getSequencerRunReportIds(SequencerRun seqRun,
                                                    String sortField,
                                                    String sortOrder,
                                                    int offset,
                                                    int limit)

  getSequencerRunReportIds.

  Parameters:

  seqRun - a SequencerRun object.

  sortField - a String object.

  sortOrder - a String object.

  offset - a int.

  limit - a int.

  Returns:

  a List object.

• countOfRows

  int countOfRows(SequencerRun seqRun)

  countOfRows.

  Parameters:

  seqRun - a SequencerRun object.

  Returns:

  a int.

• getSequencerRunReportIds

  List<SequencerRunReportId> getSequencerRunReportIds(SequencerRun seqRun)

  getSequencerRunReportIds.

  Parameters:

  seqRun - a SequencerRun object.

  Returns:

  a List object.