| Package | Description |
|---|---|
| net.sourceforge.seqware.common.business |
Looks like auto-generated classes for Hibernate.
|
| net.sourceforge.seqware.common.business.impl |
Looks like auto-generated implementation for Hibernate classes.
|
| net.sourceforge.seqware.common.dao |
More hibernate auto-generated.
|
| net.sourceforge.seqware.common.dao.hibernate |
More hibernate auto-generated.
|
| net.sourceforge.seqware.common.hibernate |
Looks like utility classes for navigating the metadb.
|
| net.sourceforge.seqware.common.hibernate.reports |
A row of the workflow run report.
|
| net.sourceforge.seqware.common.metadata |
Critical classes that effectively convert API calls into actions against the DB and web service.
|
| net.sourceforge.seqware.common.model |
Hibernate model classes for the metadb.
|
| net.sourceforge.seqware.common.model.lists |
Looks like various container classes for XML serialization.
|
| net.sourceforge.seqware.webservice.resources.queries |
Report various things about the metadb.
|
| net.sourceforge.solexatools.util |
Portal stuff, to be assessed.
|
| net.sourceforge.solexatools.webapp.controller |
Portal stuff, to be assessed.
|
| net.sourceforge.solexatools.webapp.metamodel |
Portal stuff, to be assessed.
|
| Modifier and Type | Method and Description |
|---|---|
Processing |
ProcessingService.findByID(Integer processingID)
findByID.
|
Processing |
ProcessingService.findByIDOnlyWithRunningWR(Integer processingID)
findByIDOnlyWithRunningWR.
|
Processing |
ProcessingService.findBySWAccession(Integer swAccession)
findBySWAccession.
|
Processing |
WorkflowRunService.getRootProcessing(Integer wfrId)
getRootProcessing.
|
Processing |
ProcessingService.updateDetached(Processing processing)
updateDetached.
|
Processing |
ProcessingService.updateDetached(Registration registration,
Processing processing)
updateDetached.
|
| Modifier and Type | Method and Description |
|---|---|
List<Processing> |
ProcessingService.findByCriteria(String criteria,
boolean isCaseSens)
findByCriteria.
|
List<Processing> |
ProcessingService.findByOwnerID(Integer registrationId)
findByOwnerID.
|
Set<Processing> |
ProcessingService.findFor(Sample sample)
findFor.
|
Set<Processing> |
ProcessingService.findFor(Sample sample,
WorkflowRun workflowRun)
findFor.
|
List<Processing> |
ProcessingService.list()
list.
|
Set<Processing> |
ProcessingService.setWithHasFile(Set<Processing> list)
setWithHasFile.
|
Set<Processing> |
ProcessingService.setWithHasFile(Set<Processing> list,
String metaType)
setWithHasFile.
|
| Modifier and Type | Method and Description |
|---|---|
void |
ProcessingService.delete(Processing processing,
boolean deleteRealFiles)
delete.
|
ProcessingExperiments |
ProcessingExperimentsService.findByProcessingExperiment(Processing processing,
Experiment experiment)
findByProcessingExperiment.
|
ProcessingIus |
ProcessingIUSService.findByProcessingIUS(Processing processing,
IUS ius)
findByProcessingIUS.
|
ProcessingLanes |
ProcessingLanesService.findByProcessingLane(Processing processing,
Lane lane)
findByProcessingLane.
|
ProcessingRelationship |
ProcessingRelationshipService.findByProcessings(Processing processingParent,
Processing processingChild)
findByProcessings.
|
ProcessingSamples |
ProcessingSamplesService.findByProcessingSample(Processing processing,
Sample sample)
findByProcessingSample.
|
ProcessingSequencerRuns |
ProcessingSequencerRunsService.findByProcessingSequencerRun(Processing processing,
SequencerRun sequencerRun)
findByProcessingSequencerRun.
|
ProcessingStudies |
ProcessingStudiesService.findByProcessingStudy(Processing processing,
Study study)
findByProcessingStudy.
|
Integer |
ProcessingService.insert(Processing processing)
Inserts a new Processing and returns its sw_accession number.
|
Integer |
ProcessingService.insert(Registration registration,
Processing processing)
insert.
|
void |
ProcessingService.insert(Registration registration,
SequencerRun sequencerRun,
Processing processing)
insert.
|
void |
ProcessingService.insert(SequencerRun sequencerRun,
Processing processing)
insert.
|
void |
ProcessingService.update(Processing processing)
update.
|
void |
ProcessingService.update(Registration registration,
Processing processing)
update.
|
Processing |
ProcessingService.updateDetached(Processing processing)
updateDetached.
|
Processing |
ProcessingService.updateDetached(Registration registration,
Processing processing)
updateDetached.
|
void |
FileUploadService.uploadFile(Processing processing,
UploadFile uploadFile,
FileType fileType,
Registration registration)
uploadFile.
|
| Modifier and Type | Method and Description |
|---|---|
Set<Processing> |
ProcessingService.setWithHasFile(Set<Processing> list)
setWithHasFile.
|
Set<Processing> |
ProcessingService.setWithHasFile(Set<Processing> list,
String metaType)
setWithHasFile.
|
| Modifier and Type | Method and Description |
|---|---|
Processing |
ProcessingServiceImpl.findByID(Integer id)
findByID.
|
Processing |
ProcessingServiceImpl.findByIDOnlyWithRunningWR(Integer processingID)
findByIDOnlyWithRunningWR.
|
Processing |
ProcessingServiceImpl.findBySWAccession(Integer swAccession)
findBySWAccession.
|
Processing |
WorkflowRunServiceImpl.getRootProcessing(Integer wfrId)
getRootProcessing.
|
Processing |
ProcessingServiceImpl.updateDetached(Processing processing)
updateDetached.
|
Processing |
ProcessingServiceImpl.updateDetached(Registration registration,
Processing processing)
updateDetached.
|
| Modifier and Type | Method and Description |
|---|---|
List<Processing> |
ProcessingServiceImpl.findByCriteria(String criteria,
boolean isCaseSens)
findByCriteria.
|
List<Processing> |
ProcessingServiceImpl.findByOwnerID(Integer registrationId)
findByOwnerID.
|
Set<Processing> |
ProcessingServiceImpl.findFor(Sample sample)
findFor.
|
Set<Processing> |
ProcessingServiceImpl.findFor(Sample sample,
WorkflowRun workflowRun)
findFor.
|
List<Processing> |
ProcessingServiceImpl.list()
list.
|
Set<Processing> |
ProcessingServiceImpl.setWithHasFile(Set<Processing> list)
setWithHasFile.
|
Set<Processing> |
ProcessingServiceImpl.setWithHasFile(Set<Processing> list,
String metaType)
setWithHasFile.
|
| Modifier and Type | Method and Description |
|---|---|
void |
ProcessingServiceImpl.delete(Processing processing,
boolean deleteRealFiles)
delete.
|
ProcessingExperiments |
ProcessingExperimentsServiceImpl.findByProcessingExperiment(Processing processing,
Experiment experiment)
findByProcessingExperiment.
|
ProcessingIus |
ProcessingIUSServiceImpl.findByProcessingIUS(Processing processing,
IUS ius)
findByProcessingIUS.
|
ProcessingLanes |
ProcessingLanesServiceImpl.findByProcessingLane(Processing processing,
Lane lane)
findByProcessingLane.
|
ProcessingRelationship |
ProcessingRelationshipServiceImpl.findByProcessings(Processing processingParent,
Processing processingChild)
findByProcessings.
|
ProcessingSamples |
ProcessingSamplesServiceImpl.findByProcessingSample(Processing processing,
Sample sample)
findByProcessingSample.
|
ProcessingSequencerRuns |
ProcessingSequencerRunsServiceImpl.findByProcessingSequencerRun(Processing processing,
SequencerRun sequencerRun)
findByProcessingSequencerRun.
|
ProcessingStudies |
ProcessingStudiesServiceImpl.findByProcessingStudy(Processing processing,
Study study)
findByProcessingStudy.
|
Integer |
ProcessingServiceImpl.insert(Processing processing)
Inserts a new Processing and returns its sw_accession number.
|
Integer |
ProcessingServiceImpl.insert(Registration registration,
Processing processing)
insert.
|
void |
ProcessingServiceImpl.insert(Registration registration,
SequencerRun sequencerRun,
Processing processing)
insert.
|
void |
ProcessingServiceImpl.insert(SequencerRun sequencerRun,
Processing processing)
insert.
|
void |
ProcessingServiceImpl.update(Processing processing)
update.
|
void |
ProcessingServiceImpl.update(Registration registration,
Processing processing)
update.
|
Processing |
ProcessingServiceImpl.updateDetached(Processing processing)
updateDetached.
|
Processing |
ProcessingServiceImpl.updateDetached(Registration registration,
Processing processing)
updateDetached.
|
void |
FileUploadServiceImpl.uploadFile(Processing processing,
UploadFile uploadFile,
FileType fileType,
Registration registration)
uploadFile.
|
| Modifier and Type | Method and Description |
|---|---|
Set<Processing> |
ProcessingServiceImpl.setWithHasFile(Set<Processing> list)
setWithHasFile.
|
Set<Processing> |
ProcessingServiceImpl.setWithHasFile(Set<Processing> list,
String metaType)
setWithHasFile.
|
| Modifier and Type | Method and Description |
|---|---|
Processing |
ProcessingDAO.findByFilePath(String filePath)
findByFilePath.
|
Processing |
ProcessingDAO.findByID(Integer processingId)
findByID.
|
Processing |
ProcessingDAO.findBySWAccession(Integer swAccession)
findBySWAccession.
|
Processing |
ProcessingDAO.updateDetached(Processing processing)
updateDetached.
|
Processing |
ProcessingDAO.updateDetached(Registration registration,
Processing processing)
updateDetached.
|
| Modifier and Type | Method and Description |
|---|---|
List<Processing> |
ProcessingDAO.findByCriteria(String criteria,
boolean isCaseSens)
findByCriteria.
|
List<Processing> |
ProcessingDAO.findByOwnerID(Integer registrationId)
findByOwnerID.
|
List<Processing> |
ProcessingDAO.list()
list.
|
| Modifier and Type | Method and Description |
|---|---|
void |
ProcessingDAO.delete(Processing processing)
delete.
|
List<ProcessingAttribute> |
ProcessingAttributeDAO.findAll(Processing processing)
findAll.
|
ProcessingExperiments |
ProcessingExperimentsDAO.findByProcessingExperiment(Processing processing,
Experiment experiment)
findByProcessingExperiment.
|
ProcessingIus |
ProcessingIUSDAO.findByProcessingIUS(Processing processing,
IUS ius)
findByProcessingIUS.
|
ProcessingLanes |
ProcessingLanesDAO.findByProcessingLane(Processing processing,
Lane lane)
findByProcessingLane.
|
ProcessingRelationship |
ProcessingRelationshipDAO.findByProcessings(Processing processingParent,
Processing processingChild)
findByProcessings.
|
ProcessingSamples |
ProcessingSamplesDAO.findByProcessingSample(Processing processing,
Sample sample)
findByProcessingSample.
|
ProcessingSequencerRuns |
ProcessingSequencerRunsDAO.findByProcessingSequencerRun(Processing processing,
SequencerRun sequencerRun)
findByProcessingSequencerRun.
|
ProcessingStudies |
ProcessingStudiesDAO.findByProcessingStudy(Processing processing,
Study study)
findByProcessingStudy.
|
Integer |
ProcessingDAO.insert(Processing processing)
Inserts a new Processing and returns its sw_accession number.
|
Integer |
ProcessingDAO.insert(Registration registration,
Processing processing)
insert.
|
void |
ProcessingDAO.update(Processing processing)
update.
|
void |
ProcessingDAO.update(Registration registration,
Processing processing)
update.
|
Processing |
ProcessingDAO.updateDetached(Processing processing)
updateDetached.
|
Processing |
ProcessingDAO.updateDetached(Registration registration,
Processing processing)
updateDetached.
|
| Modifier and Type | Method and Description |
|---|---|
Processing |
ProcessingDAOHibernate.findByFilePath(String filePath)
findByFilePath.
|
Processing |
ProcessingDAOHibernate.findByID(Integer id)
findByID.
|
Processing |
ProcessingDAOHibernate.findBySWAccession(Integer swAccession)
findBySWAccession.
|
Processing |
ProcessingDAOHibernate.updateDetached(Processing processing)
updateDetached.
|
Processing |
ProcessingDAOHibernate.updateDetached(Registration registration,
Processing processing)
updateDetached.
|
| Modifier and Type | Method and Description |
|---|---|
List<Processing> |
ProcessingDAOHibernate.findByCriteria(String criteria,
boolean isCaseSens)
findByCriteria.
|
List<Processing> |
ProcessingDAOHibernate.findByOwnerID(Integer registrationId)
findByOwnerID.
|
List<Processing> |
ProcessingDAOHibernate.list()
list.
|
| Modifier and Type | Method and Description |
|---|---|
void |
ProcessingDAOHibernate.delete(Processing processing)
delete.
|
List<ProcessingAttribute> |
ProcessingAttributeDAOHibernate.findAll(Processing processing)
findAll.
|
ProcessingExperiments |
ProcessingExperimentsDAOHibernate.findByProcessingExperiment(Processing processing,
Experiment experiment)
findByProcessingExperiment.
|
ProcessingIus |
ProcessingIUSDAOHibernate.findByProcessingIUS(Processing processing,
IUS ius)
findByProcessingIUS.
|
ProcessingLanes |
ProcessingLanesDAOHibernate.findByProcessingLane(Processing processing,
Lane lane)
findByProcessingLane.
|
ProcessingRelationship |
ProcessingRelationshipDAOHibernate.findByProcessings(Processing processingParent,
Processing processingChild)
findByProcessings.
|
ProcessingSamples |
ProcessingSamplesDAOHibernate.findByProcessingSample(Processing processing,
Sample sample)
findByProcessingSample.
|
ProcessingSequencerRuns |
ProcessingSequencerRunsDAOHibernate.findByProcessingSequencerRun(Processing processing,
SequencerRun sequencerRun)
findByProcessingSequencerRun.
|
ProcessingStudies |
ProcessingStudiesDAOHibernate.findByProcessingStudy(Processing processing,
Study study)
findByProcessingStudy.
|
Integer |
ProcessingDAOHibernate.insert(Processing processing)
Inserts a new Processing and returns its sw_accession number.
|
Integer |
ProcessingDAOHibernate.insert(Registration registration,
Processing processing)
insert.
|
void |
ProcessingDAOHibernate.update(Processing processing)
update.
|
void |
ProcessingDAOHibernate.update(Registration registration,
Processing processing)
update.
|
Processing |
ProcessingDAOHibernate.updateDetached(Processing processing)
updateDetached.
|
Processing |
ProcessingDAOHibernate.updateDetached(Registration registration,
Processing processing)
updateDetached.
|
| Modifier and Type | Method and Description |
|---|---|
protected Collection<Processing> |
WorkflowRunReport.collectProcessings(WorkflowRun wr) |
protected Collection<Processing> |
WorkflowRunReport.findParents(Collection<Processing> processings,
int workflowRunSWID,
boolean findImmediateOnly) |
| Modifier and Type | Method and Description |
|---|---|
void |
CheckForCycles.checkProcessing(Processing processing)
checkProcessing.
|
| Modifier and Type | Method and Description |
|---|---|
String |
WorkflowRunReport.calculateTotalTime(Collection<Processing> processings)
calculateTotalTime.
|
protected Collection<File> |
WorkflowRunReport.findFiles(Collection<Processing> processings) |
protected Collection<Processing> |
WorkflowRunReport.findParents(Collection<Processing> processings,
int workflowRunSWID,
boolean findImmediateOnly) |
| Modifier and Type | Method and Description |
|---|---|
Collection<Processing> |
WorkflowRunReportRow.getParentProcessings()
Getter for the field
parentProcessings. |
Collection<Processing> |
WorkflowRunReportRow.getWorkflowRunProcessings()
Getter for the field
workflowRunProcessings. |
| Modifier and Type | Method and Description |
|---|---|
void |
WorkflowRunReportRow.setParentProcessings(Collection<Processing> parentProcessings)
Setter for the field
parentProcessings. |
void |
WorkflowRunReportRow.setWorkflowRunProcessings(Collection<Processing> workflowRunProcessings)
Setter for the field
workflowRunProcessings. |
| Modifier and Type | Method and Description |
|---|---|
Processing |
MetadataWS.LowLevel.existsProcessing(String searchString) |
Processing |
MetadataWS.getProcessing(int processingAccession) |
Processing |
Metadata.getProcessing(int processingAccession)
getProcessing.
|
Processing |
MetadataNoConnection.getProcessing(int processingAccession) |
Processing |
MetadataDB.getProcessing(int processingAccession) |
Processing |
MetadataInMemory.getProcessing(int processingAccession) |
| Modifier and Type | Method and Description |
|---|---|
static Processing |
Processing.cloneToHibernate(Processing newP)
cloneToHibernate.
|
Processing |
ProcessingIus.getProcessing()
Getter for the field
processing. |
Processing |
ProcessingSequencerRuns.getProcessing()
Getter for the field
processing. |
Processing |
ProcessingSamples.getProcessing()
Getter for the field
processing. |
Processing |
ProcessingAttribute.getProcessing()
Getter for the field
processing. |
Processing |
ProcessingStudies.getProcessing()
Getter for the field
processing. |
Processing |
ProcessingExperiments.getProcessing()
Getter for the field
processing. |
Processing |
FileReportRow.getProcessing()
Getter for the field
processing. |
Processing |
ProcessingLanes.getProcessing()
Getter for the field
processing. |
Processing |
ProcessingRelationship.getProcessingByChildId()
Getter for the field
processingByChildId. |
Processing |
ProcessingRelationship.getProcessingByParentId()
Getter for the field
processingByParentId. |
| Modifier and Type | Method and Description |
|---|---|
Set<Processing> |
SequencerRun.getAllProcessing()
getAllProcessing.
|
Set<Processing> |
Lane.getAllProcessings()
getAllProcessings.
|
Set<Processing> |
Processing.getChildren()
Getter for the field
children. |
SortedSet<Processing> |
WorkflowRun.getOffspringProcessings()
Getter for the field
offspringProcessings. |
Set<Processing> |
Processing.getParents()
Getter for the field
parents. |
Set<Processing> |
Sample.getProcessings()
Getter for the field
processings. |
SortedSet<Processing> |
WorkflowRun.getProcessings()
Getter for the field
processings. |
Set<Processing> |
File.getProcessings()
Getter for the field
processings. |
Set<Processing> |
Lane.getProcessings()
Getter for the field
processings. |
Set<Processing> |
IUS.getProcessings()
Getter for the field
processings. |
Set<Processing> |
SequencerRun.getProcessings()
Getter for the field
processings. |
Set<Processing> |
Experiment.getProcessings()
Getter for the field
processings. |
SortedSet<Processing> |
SequencerRunDTO.getProcessings()
Getter for the field
processings. |
Set<Processing> |
Study.getProcessings()
Getter for the field
processings. |
| Modifier and Type | Method and Description |
|---|---|
void |
Lane.addProcessing(Processing processing)
addProcessing.
|
static ReturnValue |
Processing.clone(Processing newP)
clone.
|
static Processing |
Processing.cloneToHibernate(Processing newP)
cloneToHibernate.
|
int |
Processing.compareTo(Processing that) |
void |
ProcessingAttribute.setAttributeParent(Processing parent) |
void |
ProcessingIus.setProcessing(Processing processing)
Setter for the field
processing. |
void |
ProcessingSequencerRuns.setProcessing(Processing processing)
Setter for the field
processing. |
void |
ProcessingSamples.setProcessing(Processing processing)
Setter for the field
processing. |
void |
ProcessingAttribute.setProcessing(Processing processing)
Setter for the field
processing. |
void |
ProcessingStudies.setProcessing(Processing processing)
Setter for the field
processing. |
void |
ProcessingExperiments.setProcessing(Processing processing)
Setter for the field
processing. |
void |
FileReportRow.setProcessing(Processing processing)
Setter for the field
processing. |
void |
ProcessingLanes.setProcessing(Processing processing)
Setter for the field
processing. |
void |
ProcessingRelationship.setProcessingByChildId(Processing processingByChildId)
Setter for the field
processingByChildId. |
void |
ProcessingRelationship.setProcessingByParentId(Processing processingByParentId)
Setter for the field
processingByParentId. |
| Modifier and Type | Method and Description |
|---|---|
void |
Processing.setChildren(Set<Processing> children)
Setter for the field
children. |
void |
WorkflowRun.setOffspringProcessings(SortedSet<Processing> offspringProcessings)
Setter for the field
offspringProcessings. |
void |
Processing.setParents(Set<Processing> parents)
Setter for the field
parents. |
void |
Sample.setProcessings(Set<Processing> processings)
Setter for the field
processings. |
void |
File.setProcessings(Set<Processing> processing)
Setter for the field
processings. |
void |
Lane.setProcessings(Set<Processing> processings)
Setter for the field
processings. |
void |
IUS.setProcessings(Set<Processing> processings)
Setter for the field
processings. |
void |
SequencerRun.setProcessings(Set<Processing> processings)
Setter for the field
processings. |
void |
Experiment.setProcessings(Set<Processing> processings)
Setter for the field
processings. |
void |
Study.setProcessings(Set<Processing> processings)
Setter for the field
processings. |
void |
WorkflowRun.setProcessings(SortedSet<Processing> processings)
Setter for the field
processings. |
void |
SequencerRunDTO.setProcessings(SortedSet<Processing> processings)
Setter for the field
processings. |
void |
Lane.setProcessingsForView(Set<Processing> processings)
setProcessingsForView.
|
| Constructor and Description |
|---|
ProcessingAttribute(int processingAttributeId,
Processing processing)
Constructor for ProcessingAttribute.
|
ProcessingAttribute(int processingAttributeId,
Processing processing,
String tag,
String value,
String units)
Constructor for ProcessingAttribute.
|
ProcessingExperiments(int processingExperimentsId,
Processing processing,
Experiment experiment)
Constructor for ProcessingExperiments.
|
ProcessingExperiments(int processingExperimentsId,
Processing processing,
Experiment experiment,
String description,
String label,
String url,
Integer swAccession)
Constructor for ProcessingExperiments.
|
ProcessingIus(int processingIusId,
IUS ius,
Processing processing)
Constructor for ProcessingIus.
|
ProcessingIus(int processingIusId,
IUS ius,
Processing processing,
String description,
String label,
String url,
Integer swAccession)
Constructor for ProcessingIus.
|
ProcessingLanes(int processingLanesId,
Processing processing,
Lane lane)
Constructor for ProcessingLanes.
|
ProcessingLanes(int processingLanesId,
Processing processing,
Lane lane,
String description,
String label,
String url,
Integer swAccession)
Constructor for ProcessingLanes.
|
ProcessingRelationship(int processingRelationshipId,
Processing processingByParentId,
Processing processingByChildId,
String relationship)
Constructor for ProcessingRelationship.
|
ProcessingSamples(int processingSamplesId,
Processing processing,
Sample sample)
Constructor for ProcessingSamples.
|
ProcessingSamples(int processingSamplesId,
Processing processing,
Sample sample,
String description,
String label,
String url,
Integer swAccession)
Constructor for ProcessingSamples.
|
ProcessingSequencerRuns(int processingSequencerRunsId,
Processing processing,
SequencerRun sequencerRun)
Constructor for ProcessingSequencerRuns.
|
ProcessingSequencerRuns(int processingSequencerRunsId,
Processing processing,
SequencerRun sequencerRun,
String description,
String label,
String url,
Integer swAccession)
Constructor for ProcessingSequencerRuns.
|
ProcessingStudies(int processingStudiesId,
Processing processing,
Study study)
Constructor for ProcessingStudies.
|
ProcessingStudies(int processingStudiesId,
Processing processing,
Study study,
String description,
String label,
String url,
Integer swAccession)
Constructor for ProcessingStudies.
|
| Modifier and Type | Field and Description |
|---|---|
protected List<Processing> |
ProcessingList.tList |
| Modifier and Type | Method and Description |
|---|---|
List<Processing> |
ProcessingList.getList()
getList.
|
| Modifier and Type | Method and Description |
|---|---|
void |
ProcessingList.add(Processing ex)
add.
|
| Modifier and Type | Method and Description |
|---|---|
void |
ProcessingList.setList(List<Processing> list)
setList.
|
| Modifier and Type | Method and Description |
|---|---|
List<Processing> |
WorkflowRunIDProcessingsResource.collectProcessingList(int wrSWA)
collectProcessingList.
|
| Modifier and Type | Method and Description |
|---|---|
static Processing |
SequencerRunHtmlUtil.getParentProcessing(Processing processing,
Integer parentId)
getParentProcessing.
|
static Processing |
FindChildUtil.getRootProcessing(WorkflowRun workflowRun)
getRootProcessing.
|
| Modifier and Type | Method and Description |
|---|---|
static Set<Processing> |
BulkUtil.selectProcessingNode(List<String> selectedIds,
IUS ius)
selectProcessingNode.
|
static Set<Processing> |
BulkUtil.selectProcessingNode(List<String> selectedIds,
Lane lane)
selectProcessingNode.
|
static Set<Processing> |
BulkUtil.selectProcessingNode(List<String> selectedIds,
Processing proc)
selectProcessingNode.
|
static Set<Processing> |
BulkUtil.selectProcessingNode(List<String> selectedIds,
WorkflowRun workflowRun)
selectProcessingNode.
|
| Modifier and Type | Method and Description |
|---|---|
static void |
ControllerUtil.fillWorkflowProcessingMap(Processing proc,
Map<WorkflowRun,Set<Processing>> wfrProc)
fillWorkflowProcessingMap.
|
static String |
SequencerRunHtmlUtil.getAllHtml(Processing processing,
Registration registration,
String openingNodeId,
Integer currPosId,
List<String> listNodeId,
boolean isFirstCall,
boolean isViewCurrentNode,
String treeType)
getAllHtml.
|
static String |
StudyHtmlUtil.getAllHtml(Processing processing,
Registration registration,
String openingNodeId,
Integer currPosId,
List<String> listNodeId,
boolean isFirstCall,
boolean isViewCurrentNode,
String treeType)
getAllHtml.
|
static String |
SequencerRunHtmlUtil.getFileHtml(Processing proc,
Registration registration)
getFileHtml.
|
static String |
StudyHtmlUtil.getFileHtml(Processing proc,
Registration registration,
List<String> listStudyNodeId,
String treeType)
getFileHtml.
|
static String |
WorkflowRunHtmlUtil.getFileHtml(Processing proc,
WorkflowRun workflowRun,
Registration registration,
String typeTree)
getFileHtml.
|
static String |
WorkflowRunHtmlUtil.getHtml(Processing processing,
WorkflowRun workflowRun,
Registration registration,
String typeTree,
List<String> listWorkflowNodeId,
String treeType)
getHtml.
|
static String |
TreeNodeHtmlUtil.getNodeHtml(Processing processing,
Registration registration)
getNodeHtml.
|
static String |
NodeHtmlUtil.getNodeHtml(Processing processing,
Registration registration,
String typeTree,
boolean isOpenWfr,
boolean isOpenProc,
boolean isVisibleProc,
boolean isInnerWFR,
boolean isLastNode,
String treeType)
getNodeHtml.
|
static Lane |
SequencerRunHtmlUtil.getParentLane(Processing processing,
Integer parentId)
getParentLane.
|
static Processing |
SequencerRunHtmlUtil.getParentProcessing(Processing processing,
Integer parentId)
getParentProcessing.
|
static String |
NodeHtmlUtil.getProcessingHtml(Processing processing,
Registration registration,
String typeTree,
String openingNodeId,
String treeType)
getProcessingHtml.
|
static SequencerRun |
FindRootUtil.getSequencerRun(Processing processing)
getSequencerRun.
|
static Study |
FindRootUtil.getStudy(Processing processing)
getStudy.
|
static Set<Processing> |
BulkUtil.selectProcessingNode(List<String> selectedIds,
Processing proc)
selectProcessingNode.
|
static void |
SetNodeIdInSession.setFileForSequrncerRun(Processing processing,
javax.servlet.http.HttpServletRequest request)
setFileForSequrncerRun.
|
static void |
SetNodeIdInSession.setFileForStudy(Processing processing,
javax.servlet.http.HttpServletRequest request)
setFileForStudy.
|
static void |
SetNodeIdInSession.setFileForWorkflowRun(Processing processing,
javax.servlet.http.HttpServletRequest request)
setFileForWorkflowRun.
|
static void |
SetNodeIdInSession.setFileForWorkflowRunRunning(Processing processing,
javax.servlet.http.HttpServletRequest request)
setFileForWorkflowRunRunning.
|
static void |
SetNodeIdInSession.setProcessingForSequrncerRun(Processing processing,
javax.servlet.http.HttpServletRequest request)
setProcessingForSequrncerRun.
|
static void |
SetNodeIdInSession.setProcessingForStudy(Processing processing,
javax.servlet.http.HttpServletRequest request)
setProcessingForStudy.
|
static void |
SetNodeIdInSession.setProcessingForWorkflowRun(Processing processing,
javax.servlet.http.HttpServletRequest request)
setProcessingForWorkflowRun.
|
static void |
SetNodeIdInSession.setProcessingForWorkflowRunRunning(Processing processing,
javax.servlet.http.HttpServletRequest request)
setProcessingForWorkflowRunRunning.
|
| Modifier and Type | Method and Description |
|---|---|
static void |
ControllerUtil.fillWorkflowProcessingMap(Processing proc,
Map<WorkflowRun,Set<Processing>> wfrProc)
fillWorkflowProcessingMap.
|
| Modifier and Type | Method and Description |
|---|---|
protected void |
StudyListDetailsController.fillWorkflowProcessingMap(Processing proc,
Map<WorkflowRun,Set<Processing>> wfrProc)
fillWorkflowProcessingMap.
|
org.springframework.web.servlet.ModelAndView |
ProcessingController.handleCancel(javax.servlet.http.HttpServletRequest request,
javax.servlet.http.HttpServletResponse response,
Processing command)
Handles the user's request to cancel the sequencerRun or the sequencerRun update page.
|
org.springframework.web.servlet.ModelAndView |
ProcessingController.handleDelete(javax.servlet.http.HttpServletRequest request,
javax.servlet.http.HttpServletResponse response,
Processing command)
Handles the user's request to delete their processing.
|
org.springframework.web.servlet.ModelAndView |
ProcessingController.handleReset(javax.servlet.http.HttpServletRequest request,
javax.servlet.http.HttpServletResponse response,
Processing command)
Handles the user's request to reset the sequencerRun page during a new or update sequencerRun.
|
org.springframework.web.servlet.ModelAndView |
ProcessingController.handleSubmit(javax.servlet.http.HttpServletRequest request,
javax.servlet.http.HttpServletResponse response,
Processing command)
Handles the user's request to submit a new sequencerRun.
|
org.springframework.web.servlet.ModelAndView |
ProcessingController.handleUpdate(javax.servlet.http.HttpServletRequest request,
javax.servlet.http.HttpServletResponse response,
Processing command)
Handles the user's request to update their sequencerRun.
|
| Modifier and Type | Method and Description |
|---|---|
protected void |
StudyListDetailsController.fillWorkflowProcessingMap(Processing proc,
Map<WorkflowRun,Set<Processing>> wfrProc)
fillWorkflowProcessingMap.
|
| Modifier and Type | Method and Description |
|---|---|
List<Processing> |
SampleDetailsWorkflowLineItems.getProcessingsByWorkflow(WorkflowRun wfRun)
getProcessingsByWorkflow.
|
| Constructor and Description |
|---|
SampleDetailsWorkflowLineItems(Processing processing)
Constructor for SampleDetailsWorkflowLineItems.
|
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