| Package | Description |
|---|---|
| io.seqware |
Provides new utility classes.
|
| io.seqware.pipeline.engines.whitestar |
This is a simple reference implementation of a seqware engine used for development and debugging.
|
| net.sourceforge.seqware.common.business |
Looks like auto-generated classes for Hibernate.
|
| net.sourceforge.seqware.common.business.impl |
Looks like auto-generated implementation for Hibernate classes.
|
| net.sourceforge.seqware.common.dao |
More hibernate auto-generated.
|
| net.sourceforge.seqware.common.dao.hibernate |
More hibernate auto-generated.
|
| net.sourceforge.seqware.common.hibernate |
Looks like utility classes for navigating the metadb.
|
| net.sourceforge.seqware.common.hibernate.reports |
A row of the workflow run report.
|
| net.sourceforge.seqware.common.metadata |
Critical classes that effectively convert API calls into actions against the DB and web service.
|
| net.sourceforge.seqware.common.model |
Hibernate model classes for the metadb.
|
| net.sourceforge.seqware.common.model.lists |
Looks like various container classes for XML serialization.
|
| net.sourceforge.seqware.pipeline.plugins |
Create and manipulate databases for extended testing.
|
| net.sourceforge.seqware.webservice.resources.tables |
More basic web resources.
|
| net.sourceforge.solexatools.util |
Portal stuff, to be assessed.
|
| net.sourceforge.solexatools.webapp.controller |
Portal stuff, to be assessed.
|
| net.sourceforge.solexatools.webapp.metamodel |
Portal stuff, to be assessed.
|
| Modifier and Type | Method and Description |
|---|---|
static WorkflowRun |
WorkflowRuns.getWorkflowRunByStatusCmd(String statusCmd)
Convert from status command to workflow run
|
| Modifier and Type | Method and Description |
|---|---|
WorkflowRun |
Persistence.readWorkflowRun() |
| Modifier and Type | Method and Description |
|---|---|
WorkflowRun |
WorkflowRunService.findByID(Integer wfrID)
findByID.
|
WorkflowRun |
WorkflowRunService.findByIDWithIUS(Integer wfrID)
findByIDWithIUS.
|
WorkflowRun |
WorkflowRunService.findByIDWithIUSAndRunningWR(Integer wfrID)
findByIDWithIUSAndRunningWR.
|
WorkflowRun |
WorkflowRunService.findByName(String name)
findByName.
|
WorkflowRun |
WorkflowRunService.findBySWAccession(Integer swAccession)
findBySWAccession.
|
WorkflowRun |
WorkflowRunService.updateDetached(WorkflowRun workflowRun)
updateDetached.
|
| Modifier and Type | Method and Description |
|---|---|
List<WorkflowRun> |
WorkflowRunService.findByCriteria(String criteria)
findByCriteria.
|
List<WorkflowRun> |
WorkflowRunService.findByCriteria(String criteria,
boolean isCaseSens)
findByCriteria.
|
List<WorkflowRun> |
WorkflowRunService.findByOwnerID(Integer registrationID)
findByOwnerID.
|
Set<WorkflowRun> |
WorkflowRunService.findRunsForIUS(IUS ius)
findRunsForIUS.
|
Set<WorkflowRun> |
WorkflowRunService.findRunsForSample(Sample sample)
Find all the workflow runs for the specific sample.
|
List<WorkflowRun> |
WorkflowRunService.list()
list.
|
List<WorkflowRun> |
WorkflowRunService.list(Registration registration)
list.
|
List<WorkflowRun> |
WorkflowRunService.list(Registration registration,
Boolean isAsc)
list.
|
List<WorkflowRun> |
WorkflowRunService.listMyShared(Registration registration)
listMyShared.
|
List<WorkflowRun> |
WorkflowRunService.listMyShared(Registration registration,
Boolean isAsc)
listMyShared.
|
List<WorkflowRun> |
WorkflowRunService.listRunning(Registration registration)
listRunning.
|
List<WorkflowRun> |
WorkflowRunService.listRunning(Registration registration,
Boolean isAsc)
listRunning.
|
List<WorkflowRun> |
WorkflowRunService.listSharedWithMe(Registration registration)
listSharedWithMe.
|
List<WorkflowRun> |
WorkflowRunService.listSharedWithMe(Registration registration,
Boolean isAsc)
listSharedWithMe.
|
List<WorkflowRun> |
WorkflowRunService.listSharedWithMeWithSample(Registration registration)
listSharedWithMeWithSample.
|
List<WorkflowRun> |
WorkflowRunService.listWithHasFile(List<WorkflowRun> list)
listWithHasFile.
|
| Modifier and Type | Method and Description |
|---|---|
void |
WorkflowRunService.delete(WorkflowRun workflowRun,
boolean deleteRealFiles)
delete.
|
Set<Processing> |
ProcessingService.findFor(Sample sample,
WorkflowRun workflowRun)
findFor.
|
Integer |
WorkflowRunService.insert(Registration registration,
WorkflowRun workflowRun)
insert.
|
Integer |
WorkflowRunService.insert(Registration registration,
WorkflowRun workflowRun,
SortedSet<WorkflowRunParam> workflowRunParams,
Map<String,List<File>> allSelectedFiles)
insert.
|
Integer |
WorkflowRunService.insert(WorkflowRun workflowRun)
Inserts a new WorkflowRun and returns its sw_accession number.
|
Integer |
WorkflowRunService.insert(WorkflowRun workflowRun,
SortedSet<WorkflowRunParam> workflowRunParams,
Map<String,List<File>> allSelectedFiles)
insert.
|
void |
WorkflowRunService.update(Registration registration,
WorkflowRun workflowRun)
update.
|
void |
WorkflowRunService.update(Registration registration,
WorkflowRun workflowRun,
List<Integer> laneIds)
update.
|
void |
WorkflowRunService.update(WorkflowRun workflowRun)
update.
|
void |
WorkflowRunService.update(WorkflowRun workflowRun,
List<Integer> laneIds)
update.
|
WorkflowRun |
WorkflowRunService.updateDetached(WorkflowRun workflowRun)
updateDetached.
|
| Modifier and Type | Method and Description |
|---|---|
List<WorkflowRun> |
WorkflowRunService.listWithHasFile(List<WorkflowRun> list)
listWithHasFile.
|
| Modifier and Type | Method and Description |
|---|---|
WorkflowRun |
WorkflowRunServiceImpl.findByID(Integer wfrID)
findByID.
|
WorkflowRun |
WorkflowRunServiceImpl.findByIDWithIUS(Integer wfrID)
findByIDWithIUS.
|
WorkflowRun |
WorkflowRunServiceImpl.findByIDWithIUSAndRunningWR(Integer wfrID)
findByIDWithIUSAndRunningWR.
|
WorkflowRun |
WorkflowRunServiceImpl.findByName(String name)
findByName.
|
WorkflowRun |
WorkflowRunServiceImpl.findBySWAccession(Integer swAccession)
findBySWAccession.
|
WorkflowRun |
WorkflowRunServiceImpl.updateDetached(WorkflowRun workflowRun)
updateDetached.
|
| Modifier and Type | Method and Description |
|---|---|
List<WorkflowRun> |
WorkflowRunServiceImpl.findByCriteria(String criteria)
findByCriteria.
|
List<WorkflowRun> |
WorkflowRunServiceImpl.findByCriteria(String criteria,
boolean isCaseSens)
findByCriteria.
|
List<WorkflowRun> |
WorkflowRunServiceImpl.findByOwnerID(Integer registrationID)
findByOwnerID.
|
Set<WorkflowRun> |
WorkflowRunServiceImpl.findRunsForIUS(IUS ius)
findRunsForIUS.
|
Set<WorkflowRun> |
WorkflowRunServiceImpl.findRunsForSample(Sample sample)
Find all the workflow runs for the specific sample.
|
List<WorkflowRun> |
WorkflowRunServiceImpl.list()
list.
|
List<WorkflowRun> |
WorkflowRunServiceImpl.list(Registration registration)
list.
|
List<WorkflowRun> |
WorkflowRunServiceImpl.list(Registration registration,
Boolean isAsc)
list.
|
List<WorkflowRun> |
WorkflowRunServiceImpl.listMyShared(Registration registration)
listMyShared.
|
List<WorkflowRun> |
WorkflowRunServiceImpl.listMyShared(Registration registration,
Boolean isAsc)
listMyShared.
|
List<WorkflowRun> |
WorkflowRunServiceImpl.listRunning(Registration registration)
listRunning.
|
List<WorkflowRun> |
WorkflowRunServiceImpl.listRunning(Registration registration,
Boolean isAsc)
listRunning.
|
List<WorkflowRun> |
WorkflowRunServiceImpl.listSharedWithMe(Registration registration)
listSharedWithMe.
|
List<WorkflowRun> |
WorkflowRunServiceImpl.listSharedWithMe(Registration registration,
Boolean isAsc)
listSharedWithMe.
|
List<WorkflowRun> |
WorkflowRunServiceImpl.listSharedWithMeWithSample(Registration registration)
listSharedWithMeWithSample.
|
List<WorkflowRun> |
WorkflowRunServiceImpl.listWithHasFile(List<WorkflowRun> list)
listWithHasFile.
|
| Modifier and Type | Method and Description |
|---|---|
void |
WorkflowRunServiceImpl.delete(WorkflowRun workflowRun,
boolean deleteRealFiles)
delete.
|
Set<Processing> |
ProcessingServiceImpl.findFor(Sample sample,
WorkflowRun workflowRun)
findFor.
|
Integer |
WorkflowRunServiceImpl.insert(Registration registration,
WorkflowRun workflowRun)
insert.
|
Integer |
WorkflowRunServiceImpl.insert(Registration registration,
WorkflowRun workflowRun,
SortedSet<WorkflowRunParam> workflowRunParams,
Map<String,List<File>> allSelectedFiles)
insert.
|
Integer |
WorkflowRunServiceImpl.insert(WorkflowRun workflowRun)
Inserts a new WorkflowRun and returns its sw_accession number.
|
Integer |
WorkflowRunServiceImpl.insert(WorkflowRun workflowRun,
SortedSet<WorkflowRunParam> workflowRunParams,
Map<String,List<File>> allSelectedFiles)
insert.
|
void |
WorkflowRunServiceImpl.update(Registration registration,
WorkflowRun workflowRun)
update.
|
void |
WorkflowRunServiceImpl.update(Registration registration,
WorkflowRun workflowRun,
List<Integer> laneIds)
update.
|
void |
WorkflowRunServiceImpl.update(WorkflowRun workflowRun)
update.
|
void |
WorkflowRunServiceImpl.update(WorkflowRun workflowRun,
List<Integer> laneIds)
update.
|
WorkflowRun |
WorkflowRunServiceImpl.updateDetached(WorkflowRun workflowRun)
updateDetached.
|
| Modifier and Type | Method and Description |
|---|---|
List<WorkflowRun> |
WorkflowRunServiceImpl.listWithHasFile(List<WorkflowRun> list)
listWithHasFile.
|
| Modifier and Type | Method and Description |
|---|---|
WorkflowRun |
WorkflowRunDAO.findByID(Integer wfrID)
findByID.
|
WorkflowRun |
WorkflowRunDAO.findByName(String name)
findByName.
|
WorkflowRun |
WorkflowRunDAO.findBySWAccession(Integer swAccession)
findBySWAccession.
|
WorkflowRun |
WorkflowRunDAO.updateDetached(Registration registration,
WorkflowRun workflowRun)
updateDetached.
|
WorkflowRun |
WorkflowRunDAO.updateDetached(WorkflowRun workflowRun)
updateDetached.
|
| Modifier and Type | Method and Description |
|---|---|
List<WorkflowRun> |
WorkflowRunDAO.findByCriteria(String criteria)
findByCriteria.
|
List<WorkflowRun> |
WorkflowRunDAO.findByCriteria(String criteria,
boolean isCaseSens)
findByCriteria.
|
List<WorkflowRun> |
WorkflowRunDAO.findByOwnerID(Integer registrationID)
findByOwnerID.
|
Set<WorkflowRun> |
WorkflowRunDAO.findRunsForIUS(IUS ius)
findRunsForIUS.
|
List<WorkflowRun> |
WorkflowRunDAO.list()
list.
|
List<WorkflowRun> |
WorkflowRunDAO.list(Registration registration,
Boolean isAsc)
list.
|
List<WorkflowRun> |
WorkflowRunDAO.listMyShared(Registration registration,
Boolean isAsc)
listMyShared.
|
List<WorkflowRun> |
WorkflowRunDAO.listRunning(Registration registration,
Boolean isAsc)
listRunning.
|
List<WorkflowRun> |
WorkflowRunDAO.listSharedWithMe(Registration registration,
Boolean isAsc)
listSharedWithMe.
|
| Modifier and Type | Method and Description |
|---|---|
void |
WorkflowRunDAO.delete(WorkflowRun workflowRun)
delete.
|
List<WorkflowRunAttribute> |
WorkflowRunAttributeDAO.get(WorkflowRun workflowRun)
get.
|
ShareWorkflowRun |
ShareWorkflowRunDAO.getShareWorkflowRun(String email,
WorkflowRun workflowRun)
getShareWorkflowRun.
|
Integer |
WorkflowRunDAO.insert(Registration registration,
WorkflowRun workflowRun)
insert.
|
Integer |
WorkflowRunDAO.insert(WorkflowRun workflowRun)
Inserts a new WorkflowRun and returns its sw_accession number.
|
void |
WorkflowRunParamDAO.insertFilesAsWorkflowRunParam(Registration registration,
WorkflowRun workflowRun,
Map<String,List<File>> files)
insertFilesAsWorkflowRunParam.
|
void |
WorkflowRunParamDAO.insertFilesAsWorkflowRunParam(WorkflowRun workflowRun,
Map<String,List<File>> files)
insertFilesAsWorkflowRunParam.
|
List<ShareWorkflowRun> |
ShareWorkflowRunDAO.list(WorkflowRun workflowRun)
list.
|
void |
WorkflowRunDAO.update(Registration registration,
WorkflowRun workflowRun)
update.
|
void |
WorkflowRunDAO.update(WorkflowRun workflowRun)
update.
|
void |
WorkflowRunDAO.update(WorkflowRun workflowRun,
List<Integer> laneIds)
update.
|
WorkflowRun |
WorkflowRunDAO.updateDetached(Registration registration,
WorkflowRun workflowRun)
updateDetached.
|
WorkflowRun |
WorkflowRunDAO.updateDetached(WorkflowRun workflowRun)
updateDetached.
|
| Modifier and Type | Method and Description |
|---|---|
WorkflowRun |
WorkflowRunDAOHibernate.findByID(Integer wfrID)
findByID.
|
WorkflowRun |
WorkflowRunDAOHibernate.findByName(String name)
findByName.
|
WorkflowRun |
WorkflowRunDAOHibernate.findBySWAccession(Integer swAccession)
findBySWAccession.
|
WorkflowRun |
WorkflowRunDAOHibernate.updateDetached(Registration registration,
WorkflowRun workflowRun)
updateDetached.
|
WorkflowRun |
WorkflowRunDAOHibernate.updateDetached(WorkflowRun workflowRun)
updateDetached.
|
| Modifier and Type | Method and Description |
|---|---|
List<WorkflowRun> |
WorkflowRunDAOHibernate.findByCriteria(String criteria)
findByCriteria.
|
List<WorkflowRun> |
WorkflowRunDAOHibernate.findByCriteria(String criteria,
boolean isCaseSens)
findByCriteria.
|
List<WorkflowRun> |
WorkflowRunDAOHibernate.findByOwnerID(Integer registrationID)
findByOwnerID.
|
Set<WorkflowRun> |
WorkflowRunDAOHibernate.findRunsForIUS(IUS ius)
findRunsForIUS.
|
List<WorkflowRun> |
WorkflowRunDAOHibernate.list()
list.
|
List<WorkflowRun> |
WorkflowRunDAOHibernate.list(Registration registration,
Boolean isAsc)
list.
|
List<WorkflowRun> |
WorkflowRunDAOHibernate.listMyShared(Registration registration,
Boolean isAsc)
listMyShared.
|
List<WorkflowRun> |
WorkflowRunDAOHibernate.listRunning(Registration registration,
Boolean isAsc)
listRunning.
|
List<WorkflowRun> |
WorkflowRunDAOHibernate.listSharedWithMe(Registration registration,
Boolean isAsc)
listSharedWithMe.
|
| Modifier and Type | Method and Description |
|---|---|
void |
WorkflowRunDAOHibernate.delete(WorkflowRun workflowRun)
delete.
|
List<WorkflowRunAttribute> |
WorkflowRunAttributeDAOHibernate.get(WorkflowRun workflowRun)
get.
|
ShareWorkflowRun |
ShareWorkflowRunDAOHibernate.getShareWorkflowRun(String email,
WorkflowRun workflowRun)
getShareWorkflowRun.
|
Integer |
WorkflowRunDAOHibernate.insert(Registration registration,
WorkflowRun workflowRun)
insert.
|
Integer |
WorkflowRunDAOHibernate.insert(WorkflowRun workflowRun)
Inserts a new WorkflowRun and returns its sw_accession number.
|
void |
WorkflowRunParamDAOHibernate.insertFilesAsWorkflowRunParam(Registration registration,
WorkflowRun workflowRun,
Map<String,List<File>> files)
insertFilesAsWorkflowRunParam.
|
void |
WorkflowRunParamDAOHibernate.insertFilesAsWorkflowRunParam(WorkflowRun workflowRun,
Map<String,List<File>> paramNameFileHash)
insertFilesAsWorkflowRunParam.
|
List<ShareWorkflowRun> |
ShareWorkflowRunDAOHibernate.list(WorkflowRun workflowRun)
list.
|
void |
WorkflowRunDAOHibernate.update(Registration registration,
WorkflowRun workflowRun)
update.
|
void |
WorkflowRunDAOHibernate.update(WorkflowRun workflowRun)
update.
|
void |
WorkflowRunDAOHibernate.update(WorkflowRun workflowRun,
List<Integer> laneIds)
update.
|
WorkflowRun |
WorkflowRunDAOHibernate.updateDetached(Registration registration,
WorkflowRun workflowRun)
updateDetached.
|
WorkflowRun |
WorkflowRunDAOHibernate.updateDetached(WorkflowRun workflowRun)
updateDetached.
|
| Modifier and Type | Method and Description |
|---|---|
protected Collection<Processing> |
WorkflowRunReport.collectProcessings(WorkflowRun wr) |
| Modifier and Type | Method and Description |
|---|---|
WorkflowRun |
WorkflowRunReportRow.getWorkflowRun()
Getter for the field
workflowRun. |
| Modifier and Type | Method and Description |
|---|---|
void |
WorkflowRunReportRow.setWorkflowRun(WorkflowRun workflowRun)
Setter for the field
workflowRun. |
| Modifier and Type | Method and Description |
|---|---|
WorkflowRun |
MetadataWS.LowLevel.existsWorkflowRun(String searchString) |
WorkflowRun |
MetadataWS.getWorkflowRun(int workflowRunAccession)
getWorkflowRun.
|
WorkflowRun |
Metadata.getWorkflowRun(int workflowRunAccession)
getWorkflowRun.
|
WorkflowRun |
MetadataNoConnection.getWorkflowRun(int workflowRunAccession)
getWorkflowRun.
|
WorkflowRun |
MetadataDB.getWorkflowRun(int workflowRunAccession)
getWorkflowRun.
|
WorkflowRun |
MetadataInMemory.getWorkflowRun(int workflowRunAccession) |
WorkflowRun |
MetadataWS.getWorkflowRunWithWorkflow(String workflowRunAccession)
getWorkflowRunWithWorkflow.
|
WorkflowRun |
Metadata.getWorkflowRunWithWorkflow(String workflowRunAccession)
getWorkflowRunWithWorkflow.
|
WorkflowRun |
MetadataNoConnection.getWorkflowRunWithWorkflow(String workflowRunAccession)
getWorkflowRunWithWorkflow.
|
WorkflowRun |
MetadataDB.getWorkflowRunWithWorkflow(String workflowRunAccession)
getWorkflowRunWithWorkflow.
|
WorkflowRun |
MetadataInMemory.getWorkflowRunWithWorkflow(String workflowRunAccession) |
| Modifier and Type | Method and Description |
|---|---|
protected static void |
MetadataWS.convertParamsToWorkflowRun(WorkflowRun wr,
String pegasusCmd,
String workflowTemplate,
WorkflowRunStatus status,
String statusCmd,
String workingDirectory,
String dax,
String ini,
String host,
String stdErr,
String stdOut,
String workflowEngine,
Set<Integer> inputFiles) |
void |
MetadataWS.updateWorkflowRun(WorkflowRun wr) |
void |
Metadata.updateWorkflowRun(WorkflowRun wr) |
void |
MetadataNoConnection.updateWorkflowRun(WorkflowRun wr) |
void |
MetadataDB.updateWorkflowRun(WorkflowRun wr) |
void |
MetadataInMemory.updateWorkflowRun(WorkflowRun wr) |
| Modifier and Type | Method and Description |
|---|---|
static WorkflowRun |
WorkflowRun.cloneToHibernate(WorkflowRun newWR)
cloneToHibernate.
|
WorkflowRun |
Expense.getWorkflowRun()
Getter for the field
workflowRun. |
WorkflowRun |
WorkflowRunParam.getWorkflowRun()
Getter for the field
workflowRun. |
WorkflowRun |
WorkflowRunAttribute.getWorkflowRun()
Getter for the field
workflowRun. |
WorkflowRun |
Processing.getWorkflowRun()
Getter for the field
workflowRun. |
WorkflowRun |
Processing.getWorkflowRunByAncestorWorkflowRunId()
Getter for the field
workflowRunByAncestorWorkflowRunId. |
| Modifier and Type | Method and Description |
|---|---|
SortedSet<WorkflowRun> |
Workflow.getWorkflowRuns()
Getter for the field
workflowRuns. |
Set<WorkflowRun> |
Lane.getWorkflowRuns()
Getter for the field
workflowRuns. |
Set<WorkflowRun> |
IUS.getWorkflowRuns()
Getter for the field
workflowRuns. |
| Modifier and Type | Method and Description |
|---|---|
static WorkflowRun |
WorkflowRun.cloneToHibernate(WorkflowRun newWR)
cloneToHibernate.
|
int |
WorkflowRun.compareTo(WorkflowRun that) |
void |
WorkflowRunAttribute.setAttributeParent(WorkflowRun parent) |
void |
Expense.setWorkflowRun(WorkflowRun workflowRun)
Setter for the field
workflowRun. |
void |
WorkflowRunParam.setWorkflowRun(WorkflowRun workflowRun)
Setter for the field
workflowRun. |
void |
WorkflowRunAttribute.setWorkflowRun(WorkflowRun workflowRun)
Setter for the field
workflowRun. |
void |
Processing.setWorkflowRun(WorkflowRun workflowRun)
Setter for the field
workflowRun. |
void |
Processing.setWorkflowRunByAncestorWorkflowRunId(WorkflowRun workflowRunByAncestorWorkflowRunId)
Setter for the field
workflowRunByAncestorWorkflowRunId. |
| Modifier and Type | Method and Description |
|---|---|
void |
Lane.setWorkflowRuns(Set<WorkflowRun> workflowRuns)
Setter for the field
workflowRuns. |
void |
IUS.setWorkflowRuns(Set<WorkflowRun> workflowRuns)
Setter for the field
workflowRuns. |
void |
Workflow.setWorkflowRuns(SortedSet<WorkflowRun> workflowRuns)
Setter for the field
workflowRuns. |
| Modifier and Type | Field and Description |
|---|---|
protected List<WorkflowRun> |
WorkflowRunList2.tList |
protected List<WorkflowRun> |
WorkflowRunList.tList |
| Modifier and Type | Method and Description |
|---|---|
List<WorkflowRun> |
WorkflowRunList2.getList()
getList.
|
List<WorkflowRun> |
WorkflowRunList.getList()
getList.
|
| Modifier and Type | Method and Description |
|---|---|
void |
WorkflowRunList2.add(WorkflowRun ex)
add.
|
void |
WorkflowRunList.add(WorkflowRun ex)
add.
|
| Modifier and Type | Method and Description |
|---|---|
void |
WorkflowRunList.setList(Collection<WorkflowRun> list)
setList.
|
void |
WorkflowRunList2.setList(List<WorkflowRun> list)
setList.
|
| Modifier and Type | Method and Description |
|---|---|
static String |
WorkflowStatusChecker.extractStdErr(WorkflowRun wr,
Set<String> set)
Extract stderr from a workflow run
|
static String |
WorkflowStatusChecker.extractStdOut(WorkflowRun wr,
Set<String> set)
Extract stdout from a workflow run
|
| Modifier and Type | Method and Description |
|---|---|
WorkflowRun |
WorkflowRunResource.insertWorkflowRun(WorkflowRun p)
insertWorkflowRun.
|
WorkflowRun |
WorkflowRunIDResource.updateWorkflowRun(WorkflowRun newWR)
updateWorkflowRun.
|
| Modifier and Type | Method and Description |
|---|---|
WorkflowRun |
WorkflowRunResource.insertWorkflowRun(WorkflowRun p)
insertWorkflowRun.
|
WorkflowRun |
WorkflowRunIDResource.updateWorkflowRun(WorkflowRun newWR)
updateWorkflowRun.
|
| Modifier and Type | Method and Description |
|---|---|
static List<WorkflowRun> |
BulkUtil.selectWorkflowRunNode(List<String> selectedIds,
List<WorkflowRun> workflowRuns)
selectWorkflowRunNode.
|
| Modifier and Type | Method and Description |
|---|---|
static String |
NodeHtmlUtil.getAnalysisWorkflowHtml(WorkflowRun workflowRun,
Registration registration,
String typeTree,
boolean isOpen,
boolean isLast,
String treeType)
getAnalysisWorkflowHtml.
|
static String |
WorkflowRunHtmlUtil.getFileHtml(Processing proc,
WorkflowRun workflowRun,
Registration registration,
String typeTree)
getFileHtml.
|
static String |
WorkflowRunHtmlUtil.getHtml(Processing processing,
WorkflowRun workflowRun,
Registration registration,
String typeTree,
List<String> listWorkflowNodeId,
String treeType)
getHtml.
|
static String |
WorkflowRunHtmlUtil.getHtml(Sample sample,
WorkflowRun workflowRun,
Registration registration,
String typeTree)
getHtml.
|
static String |
WorkflowRunHtmlUtil.getHtml(WorkflowRun workflowRun,
Registration registration,
String typeTree,
boolean isWorkflowRunWithSample,
String treeType)
getHtml.
|
static Processing |
FindChildUtil.getRootProcessing(WorkflowRun workflowRun)
getRootProcessing.
|
static String |
NodeHtmlUtil.getWorkflowRunHtml(WorkflowRun workflowRun,
Registration registration,
String typeTree,
String openingNodeId,
String treeType)
getWorkflowRunHtml.
|
static String |
NodeHtmlUtil.getWorkflowRunHtmlWithIUSs(WorkflowRun workflowRun,
Registration registration,
String typeTree,
String openingNodeId,
String treeType)
getWorkflowRunHtmlWithIUSs.
|
static Set<Processing> |
BulkUtil.selectProcessingNode(List<String> selectedIds,
WorkflowRun workflowRun)
selectProcessingNode.
|
| Modifier and Type | Method and Description |
|---|---|
static void |
ControllerUtil.fillWorkflowProcessingMap(Processing proc,
Map<WorkflowRun,Set<Processing>> wfrProc)
fillWorkflowProcessingMap.
|
static List<WorkflowRun> |
BulkUtil.selectWorkflowRunNode(List<String> selectedIds,
List<WorkflowRun> workflowRuns)
selectWorkflowRunNode.
|
| Modifier and Type | Method and Description |
|---|---|
org.springframework.web.servlet.ModelAndView |
AnalisysEventController.handleCancel(javax.servlet.http.HttpServletRequest request,
javax.servlet.http.HttpServletResponse response,
WorkflowRun command)
Handles the user's request to delete their study.
|
org.springframework.web.servlet.ModelAndView |
AnalisysEventController.handleDelete(javax.servlet.http.HttpServletRequest request,
javax.servlet.http.HttpServletResponse response,
WorkflowRun command)
Handles the user's request to delete their study.
|
org.springframework.web.servlet.ModelAndView |
AnalisysEventController.handleShare(javax.servlet.http.HttpServletRequest request,
javax.servlet.http.HttpServletResponse response,
WorkflowRun command)
Handles the user's request to share their WorkflowRun.
|
| Modifier and Type | Method and Description |
|---|---|
protected void |
StudyListDetailsController.fillWorkflowProcessingMap(Processing proc,
Map<WorkflowRun,Set<Processing>> wfrProc)
fillWorkflowProcessingMap.
|
| Modifier and Type | Method and Description |
|---|---|
WorkflowRun[] |
StudySampleReportLineItem.getWfRuns()
Getter for the field
wfRuns. |
| Modifier and Type | Method and Description |
|---|---|
List<WorkflowRun> |
SampleDetailsWorkflowLineItems.getWorkflowsRun()
getWorkflowsRun.
|
| Modifier and Type | Method and Description |
|---|---|
List<Processing> |
SampleDetailsWorkflowLineItems.getProcessingsByWorkflow(WorkflowRun wfRun)
getProcessingsByWorkflow.
|
void |
StudySampleReportLineItem.setWfRuns(WorkflowRun[] wfRuns)
Setter for the field
wfRuns. |
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