ContextImpl (SeqWare 1.1.2 API)

java.lang.Object
- net.sourceforge.seqware.common.ContextImpl

```
public class ContextImpl
extends Object
```
ContextImpl class.

Version:

$Id: $Id

Author:

boconnor

Method Summary

Methods
Modifier and Type	Method and Description
`ExperimentLibraryDesignService`	`getExperimentLibraryDesignService()`
`ExperimentService`	`getExperimentService()` Getter for the field `experimentService`.
`ExperimentSpotDesignReadSpecService`	`getExperimentSpotDesignReadSpecService()`
`ExperimentSpotDesignService`	`getExperimentSpotDesignService()`
`FileAttributeService`	`getFileAttributeService()` Getter for the field `fileAttributeService`.
`FileService`	`getFileService()` Getter for the field `fileService`.
`static ContextImpl`	`getInstance()` getInstance.
`IUSService`	`getIusService()` Getter for the field `iusService`.
`LaneService`	`getLaneService()` Getter for the field `laneService`.
`LibrarySelectionService`	`getLibrarySelectionService()`
`LibraryService`	`getLibraryService()` Getter for the field `libraryService`.
`LibrarySourceService`	`getLibrarySourceService()`
`LibraryStrategyService`	`getLibraryStrategyService()`
`OrganismService`	`getOrganismService()`
`PlatformService`	`getPlatformService()` Getter for the field `platformService`.
`ProcessingExperimentsService`	`getProcessingExperimentsService()` Getter for the field `processingExperimentsService`.
`ProcessingIUSService`	`getProcessingIusService()` Getter for the field `processingIusService`.
`ProcessingLanesService`	`getProcessingLaneService()` Getter for the field `processingLaneService`.
`ProcessingRelationshipService`	`getProcessingRelationshipService()` Getter for the field `processingRelationshipService`.
`ProcessingSamplesService`	`getProcessingSamplesService()` Getter for the field `processingSamplesService`.
`ProcessingSequencerRunsService`	`getProcessingSequencerRunService()` Getter for the field `processingSequencerRunService`.
`ProcessingService`	`getProcessingService()` Getter for the field `processingService`.
`ProcessingStudiesService`	`getProcessingStudiesService()` Getter for the field `processingStudiesService`.
`RegistrationService`	`getRegistrationService()` Getter for the field `registrationService`.
`SampleReportService`	`getSampleReportService()` Getter for the field `sampleReportService`.
`SampleService`	`getSampleService()` Getter for the field `sampleService`.
`SequencerRunService`	`getSequencerRunService()` Getter for the field `sequencerRunService`.
`org.hibernate.SessionFactory`	`getSessionFactory()` Getter for the field `sessionFactory`.
`StudyService`	`getStudyService()` Getter for the field `studyService`.
`StudyTypeService`	`getStudyTypeService()`
`ValidationReportService`	`getValidationReportService()` Getter for the field `validationReportService`.
`WorkflowParamService`	`getWorkflowParamService()` Getter for the field `workflowParamService`.
`WorkflowParamValueService`	`getWorkflowParamValueService()` Getter for the field `workflowParamValueService`.
`WorkflowRunService`	`getWorkflowRunService()` Getter for the field `workflowRunService`.
`WorkflowService`	`getWorkflowService()` Getter for the field `workflowService`.
`void`	`setExperimentLibraryDesignService(ExperimentLibraryDesignService experimentLibraryDesignService)`
`void`	`setExperimentService(ExperimentService experimentService)` Setter for the field `experimentService`.
`void`	`setExperimentSpotDesignReadSpecService(ExperimentSpotDesignReadSpecService experimentSpotDesignReadSpecService)`
`void`	`setExperimentSpotDesignService(ExperimentSpotDesignService experimentSpotDesignService)`
`void`	`setFileService(FileService fileService)` Setter for the field `fileService`.
`void`	`setIusService(IUSService iusService)` Setter for the field `iusService`.
`void`	`setLaneService(LaneService laneService)` Setter for the field `laneService`.
`void`	`setLibrarySelectionService(LibrarySelectionService librarySelectionService)`
`void`	`setLibraryService(LibraryService libraryService)` Setter for the field `libraryService`.
`void`	`setLibrarySourceService(LibrarySourceService librarySourceService)`
`void`	`setLibraryStrategyService(LibraryStrategyService libraryStrategyService)`
`void`	`setOrganismService(OrganismService organismService)`
`void`	`setPlatformService(PlatformService platformService)` Setter for the field `platformService`.
`void`	`setProcessingExperimentsService(ProcessingExperimentsService processingExperimentsService)` Setter for the field `processingExperimentsService`.
`void`	`setProcessingIusService(ProcessingIUSService processingIusService)` Setter for the field `processingIusService`.
`void`	`setProcessingLaneService(ProcessingLanesService processingLaneService)` Setter for the field `processingLaneService`.
`void`	`setProcessingRelationshipService(ProcessingRelationshipService processingRelationshipService)` Setter for the field `processingRelationshipService`.
`void`	`setProcessingSamplesService(ProcessingSamplesService processingSamplesService)` Setter for the field `processingSamplesService`.
`void`	`setProcessingSequencerRunService(ProcessingSequencerRunsService processingSequencerRunService)` Setter for the field `processingSequencerRunService`.
`void`	`setProcessingService(ProcessingService processingService)` Setter for the field `processingService`.
`void`	`setProcessingStudiesService(ProcessingStudiesService processingStudiesService)` Setter for the field `processingStudiesService`.
`void`	`setRegistrationService(RegistrationService registrationService)` Setter for the field `registrationService`.
`void`	`setSampleReportService(SampleReportService sampleReportService)` Setter for the field `sampleReportService`.
`void`	`setSampleService(SampleService sampleService)` Setter for the field `sampleService`.
`void`	`setSequencerRunService(SequencerRunService sequencerRunService)` Setter for the field `sequencerRunService`.
`void`	`setSessionFactory(org.hibernate.SessionFactory sessionFactory)` Setter for the field `sessionFactory`.
`void`	`setStudyService(StudyService studyService)` Setter for the field `studyService`.
`void`	`setStudyTypeService(StudyTypeService studyTypeService)`
`void`	`setValidationReportService(ValidationReportService validationReportService)` Setter for the field `validationReportService`.
`void`	`setWorkflowParamService(WorkflowParamService workflowParamService)` Setter for the field `workflowParamService`.
`void`	`setWorkflowParamValueService(WorkflowParamValueService workflowParamValueService)` Setter for the field `workflowParamValueService`.
`void`	`setWorkflowRunService(WorkflowRunService workflowRunService)` Setter for the field `workflowRunService`.
`void`	`setWorkflowService(WorkflowService workflowService)` Setter for the field `workflowService`.

Methods inherited from class java.lang.Object
clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

- Method Detail
  - getInstance
```
public static ContextImpl getInstance()
```
    getInstance.
    
    Returns:
    a ContextImpl object.
  - getStudyService
```
public StudyService getStudyService()
```
    Getter for the field studyService.
    
    Returns:
    a StudyService object.
  - setStudyService
```
public void setStudyService(StudyService studyService)
```
    Setter for the field studyService.
    
    Parameters:
    studyService - a StudyService object.
  - getExperimentService
```
public ExperimentService getExperimentService()
```
    Getter for the field experimentService.
    
    Returns:
    a ExperimentService object.
  - setExperimentService
```
public void setExperimentService(ExperimentService experimentService)
```
    Setter for the field experimentService.
    
    Parameters:
    experimentService - a ExperimentService object.
  - getFileService
```
public FileService getFileService()
```
    Getter for the field fileService.
    
    Returns:
    a FileService object.
  - setFileService
```
public void setFileService(FileService fileService)
```
    Setter for the field fileService.
    
    Parameters:
    fileService - a FileService object.
  - getIusService
```
public IUSService getIusService()
```
    Getter for the field iusService.
    
    Returns:
    a IUSService object.
  - setIusService
```
public void setIusService(IUSService iusService)
```
    Setter for the field iusService.
    
    Parameters:
    iusService - a IUSService object.
  - getLaneService
```
public LaneService getLaneService()
```
    Getter for the field laneService.
    
    Returns:
    a LaneService object.
  - setLaneService
```
public void setLaneService(LaneService laneService)
```
    Setter for the field laneService.
    
    Parameters:
    laneService - a LaneService object.
  - getProcessingExperimentsService
```
public ProcessingExperimentsService getProcessingExperimentsService()
```
    Getter for the field processingExperimentsService.
    
    Returns:
    a ProcessingExperimentsService object.
  - setProcessingExperimentsService
```
public void setProcessingExperimentsService(ProcessingExperimentsService processingExperimentsService)
```
    Setter for the field processingExperimentsService.
    
    Parameters:
    processingExperimentsService - a ProcessingExperimentsService object.
  - getProcessingIusService
```
public ProcessingIUSService getProcessingIusService()
```
    Getter for the field processingIusService.
    
    Returns:
    a ProcessingIUSService object.
  - setProcessingIusService
```
public void setProcessingIusService(ProcessingIUSService processingIusService)
```
    Setter for the field processingIusService.
    
    Parameters:
    processingIusService - a ProcessingIUSService object.
  - getProcessingLaneService
```
public ProcessingLanesService getProcessingLaneService()
```
    Getter for the field processingLaneService.
    
    Returns:
    a ProcessingLanesService object.
  - setProcessingLaneService
```
public void setProcessingLaneService(ProcessingLanesService processingLaneService)
```
    Setter for the field processingLaneService.
    
    Parameters:
    processingLaneService - a ProcessingLanesService object.
  - getProcessingRelationshipService
```
public ProcessingRelationshipService getProcessingRelationshipService()
```
    Getter for the field processingRelationshipService.
    
    Returns:
    a ProcessingRelationshipService object.
  - setProcessingRelationshipService
```
public void setProcessingRelationshipService(ProcessingRelationshipService processingRelationshipService)
```
    Setter for the field processingRelationshipService.
    
    Parameters:
    processingRelationshipService - a ProcessingRelationshipService object.
  - getProcessingSamplesService
```
public ProcessingSamplesService getProcessingSamplesService()
```
    Getter for the field processingSamplesService.
    
    Returns:
    a ProcessingSamplesService object.
  - setProcessingSamplesService
```
public void setProcessingSamplesService(ProcessingSamplesService processingSamplesService)
```
    Setter for the field processingSamplesService.
    
    Parameters:
    processingSamplesService - a ProcessingSamplesService object.
  - getProcessingSequencerRunService
```
public ProcessingSequencerRunsService getProcessingSequencerRunService()
```
    Getter for the field processingSequencerRunService.
    
    Returns:
    a ProcessingSequencerRunsService object.
  - setProcessingSequencerRunService
```
public void setProcessingSequencerRunService(ProcessingSequencerRunsService processingSequencerRunService)
```
    Setter for the field processingSequencerRunService.
    
    Parameters:
    processingSequencerRunService - a ProcessingSequencerRunsService object.
  - getProcessingService
```
public ProcessingService getProcessingService()
```
    Getter for the field processingService.
    
    Returns:
    a ProcessingService object.
  - setProcessingService
```
public void setProcessingService(ProcessingService processingService)
```
    Setter for the field processingService.
    
    Parameters:
    processingService - a ProcessingService object.
  - getProcessingStudiesService
```
public ProcessingStudiesService getProcessingStudiesService()
```
    Getter for the field processingStudiesService.
    
    Returns:
    a ProcessingStudiesService object.
  - setProcessingStudiesService
```
public void setProcessingStudiesService(ProcessingStudiesService processingStudiesService)
```
    Setter for the field processingStudiesService.
    
    Parameters:
    processingStudiesService - a ProcessingStudiesService object.
  - getRegistrationService
```
public RegistrationService getRegistrationService()
```
    Getter for the field registrationService.
    
    Returns:
    a RegistrationService object.
  - setRegistrationService
```
public void setRegistrationService(RegistrationService registrationService)
```
    Setter for the field registrationService.
    
    Parameters:
    registrationService - a RegistrationService object.
  - getSampleService
```
public SampleService getSampleService()
```
    Getter for the field sampleService.
    
    Returns:
    a SampleService object.
  - setSampleService
```
public void setSampleService(SampleService sampleService)
```
    Setter for the field sampleService.
    
    Parameters:
    sampleService - a SampleService object.
  - getSequencerRunService
```
public SequencerRunService getSequencerRunService()
```
    Getter for the field sequencerRunService.
    
    Returns:
    a SequencerRunService object.
  - setSequencerRunService
```
public void setSequencerRunService(SequencerRunService sequencerRunService)
```
    Setter for the field sequencerRunService.
    
    Parameters:
    sequencerRunService - a SequencerRunService object.
  - getSessionFactory
```
public org.hibernate.SessionFactory getSessionFactory()
```
    Getter for the field sessionFactory.
    
    Returns:
    a SessionFactory object.
  - setSessionFactory
```
public void setSessionFactory(org.hibernate.SessionFactory sessionFactory)
```
    Setter for the field sessionFactory.
    
    Parameters:
    sessionFactory - a SessionFactory object.
  - getWorkflowParamService
```
public WorkflowParamService getWorkflowParamService()
```
    Getter for the field workflowParamService.
    
    Returns:
    a WorkflowParamService object.
  - setWorkflowParamService
```
public void setWorkflowParamService(WorkflowParamService workflowParamService)
```
    Setter for the field workflowParamService.
    
    Parameters:
    workflowParamService - a WorkflowParamService object.
  - getWorkflowParamValueService
```
public WorkflowParamValueService getWorkflowParamValueService()
```
    Getter for the field workflowParamValueService.
    
    Returns:
    a WorkflowParamValueService object.
  - setWorkflowParamValueService
```
public void setWorkflowParamValueService(WorkflowParamValueService workflowParamValueService)
```
    Setter for the field workflowParamValueService.
    
    Parameters:
    workflowParamValueService - a WorkflowParamValueService object.
  - getWorkflowRunService
```
public WorkflowRunService getWorkflowRunService()
```
    Getter for the field workflowRunService.
    
    Returns:
    a WorkflowRunService object.
  - setWorkflowRunService
```
public void setWorkflowRunService(WorkflowRunService workflowRunService)
```
    Setter for the field workflowRunService.
    
    Parameters:
    workflowRunService - a WorkflowRunService object.
  - getWorkflowService
```
public WorkflowService getWorkflowService()
```
    Getter for the field workflowService.
    
    Returns:
    a WorkflowService object.
  - setWorkflowService
```
public void setWorkflowService(WorkflowService workflowService)
```
    Setter for the field workflowService.
    
    Parameters:
    workflowService - a WorkflowService object.
  - getPlatformService
```
public PlatformService getPlatformService()
```
    Getter for the field platformService.
    
    Returns:
    a PlatformService object.
  - setPlatformService
```
public void setPlatformService(PlatformService platformService)
```
    Setter for the field platformService.
    
    Parameters:
    platformService - a PlatformService object.
  - getSampleReportService
```
public SampleReportService getSampleReportService()
```
    Getter for the field sampleReportService.
    
    Returns:
    a SampleReportService object.
  - setSampleReportService
```
public void setSampleReportService(SampleReportService sampleReportService)
```
    Setter for the field sampleReportService.
    
    Parameters:
    sampleReportService - a SampleReportService object.
  - getLibraryService
```
public LibraryService getLibraryService()
```
    Getter for the field libraryService.
    
    Returns:
    a LibraryService object.
  - setLibraryService
```
public void setLibraryService(LibraryService libraryService)
```
    Setter for the field libraryService.
    
    Parameters:
    libraryService - a LibraryService object.
  - getValidationReportService
```
public ValidationReportService getValidationReportService()
```
    Getter for the field validationReportService.
    
    Returns:
    a ValidationReportService object.
  - setValidationReportService
```
public void setValidationReportService(ValidationReportService validationReportService)
```
    Setter for the field validationReportService.
    
    Parameters:
    validationReportService - a ValidationReportService object.
  - getFileAttributeService
```
public FileAttributeService getFileAttributeService()
```
    Getter for the field fileAttributeService.
    
    Returns:
    a FileAttributeService object.
  - getStudyTypeService
```
public StudyTypeService getStudyTypeService()
```
  - setStudyTypeService
```
public void setStudyTypeService(StudyTypeService studyTypeService)
```
  - getLibrarySelectionService
```
public LibrarySelectionService getLibrarySelectionService()
```
  - setLibrarySelectionService
```
public void setLibrarySelectionService(LibrarySelectionService librarySelectionService)
```
  - getLibrarySourceService
```
public LibrarySourceService getLibrarySourceService()
```
  - setLibrarySourceService
```
public void setLibrarySourceService(LibrarySourceService librarySourceService)
```
  - getLibraryStrategyService
```
public LibraryStrategyService getLibraryStrategyService()
```
  - setLibraryStrategyService
```
public void setLibraryStrategyService(LibraryStrategyService libraryStrategyService)
```
  - getOrganismService
```
public OrganismService getOrganismService()
```
  - setOrganismService
```
public void setOrganismService(OrganismService organismService)
```
  - getExperimentSpotDesignService
```
public ExperimentSpotDesignService getExperimentSpotDesignService()
```
    Returns:
    the experimentSpotDesignService
  - setExperimentSpotDesignService
```
public void setExperimentSpotDesignService(ExperimentSpotDesignService experimentSpotDesignService)
```
    Parameters:
    experimentSpotDesignService - the experimentSpotDesignService to set
  - getExperimentLibraryDesignService
```
public ExperimentLibraryDesignService getExperimentLibraryDesignService()
```
    Returns:
    the experimentLibraryDesignService
  - setExperimentLibraryDesignService
```
public void setExperimentLibraryDesignService(ExperimentLibraryDesignService experimentLibraryDesignService)
```
    Parameters:
    experimentLibraryDesignService - the experimentLibraryDesignService to set
  - getExperimentSpotDesignReadSpecService
```
public ExperimentSpotDesignReadSpecService getExperimentSpotDesignReadSpecService()
```
    Returns:
    the experimentSpotDesignReadSpecService
  - setExperimentSpotDesignReadSpecService
```
public void setExperimentSpotDesignReadSpecService(ExperimentSpotDesignReadSpecService experimentSpotDesignReadSpecService)
```
    Parameters:
    experimentSpotDesignReadSpecService - the experimentSpotDesignReadSpecService to set

Class ContextImpl

Method Summary

Methods inherited from class java.lang.Object

Method Detail

getInstance

getStudyService

setStudyService

getExperimentService

setExperimentService

getFileService

setFileService

getIusService

setIusService

getLaneService

setLaneService

getProcessingExperimentsService

setProcessingExperimentsService

getProcessingIusService

setProcessingIusService

getProcessingLaneService

setProcessingLaneService

getProcessingRelationshipService

setProcessingRelationshipService

getProcessingSamplesService

setProcessingSamplesService

getProcessingSequencerRunService

setProcessingSequencerRunService

getProcessingService

setProcessingService

getProcessingStudiesService

setProcessingStudiesService

getRegistrationService

setRegistrationService

getSampleService

setSampleService

getSequencerRunService

setSequencerRunService

getSessionFactory

setSessionFactory

getWorkflowParamService

setWorkflowParamService

getWorkflowParamValueService

setWorkflowParamValueService

getWorkflowRunService

setWorkflowRunService

getWorkflowService

setWorkflowService

getPlatformService

setPlatformService

getSampleReportService

setSampleReportService

getLibraryService

setLibraryService

getValidationReportService

setValidationReportService

getFileAttributeService

getStudyTypeService

setStudyTypeService

getLibrarySelectionService

setLibrarySelectionService

getLibrarySourceService

setLibrarySourceService

getLibraryStrategyService

setLibraryStrategyService

getOrganismService

setOrganismService

getExperimentSpotDesignService

setExperimentSpotDesignService

getExperimentLibraryDesignService

setExperimentLibraryDesignService

getExperimentSpotDesignReadSpecService

setExperimentSpotDesignReadSpecService