| Package | Description |
|---|---|
| net.sourceforge.seqware.pipeline.workflowV2.engine.oozie.object |
Implementation of workflow steps for Oozie.
|
| net.sourceforge.seqware.pipeline.workflowV2.model |
Classes that implement the tasks within workflows.
|
| Modifier and Type | Field and Description |
|---|---|
protected AbstractJob |
OozieJob.jobObj |
| Modifier and Type | Method and Description |
|---|---|
AbstractJob |
OozieJob.getJobObject() |
| Constructor and Description |
|---|
BatchedOozieBashJob(AbstractJob job,
String name,
String oozie_working_dir,
boolean useSge,
File seqwareJar,
String threadsSgeParamFormat,
String maxMemorySgeParamFormat,
StringTruncator truncator) |
BatchedOozieProvisionFileJob(AbstractJob job,
String name,
String oozie_working_dir,
boolean useSge,
File seqwareJar,
String threadsSgeParamFormat,
String maxMemorySgeParamFormat,
StringTruncator truncator) |
OozieBashJob(AbstractJob job,
String name,
String oozie_working_dir,
boolean useSge,
File seqwareJar,
String threadsSgeParamFormat,
String maxMemorySgeParamFormat,
StringTruncator truncator) |
OozieJob(AbstractJob job,
String longName,
String oozie_working_dir,
boolean useSge,
File seqwareJar,
String threadsSgeParamFormat,
String maxMemorySgeParamFormat,
StringTruncator truncator) |
OozieProvisionFileJob(AbstractJob job,
SqwFile file,
String name,
String oozie_working_dir,
boolean useSge,
File seqwareJar,
String slotsSgeParamFormat,
String maxMemorySgeParamFormat,
StringTruncator truncator) |
| Modifier and Type | Class and Description |
|---|---|
class |
BashJob |
class |
JavaJob |
class |
JavaSeqwareModuleJob |
class |
JobBatch |
class |
PerlJob |
| Modifier and Type | Method and Description |
|---|---|
AbstractJob |
AbstractJob.setMaxMemory(String mem) |
AbstractJob |
JobBatch.setThreads(int count) |
AbstractJob |
AbstractJob.setThreads(int count) |
| Modifier and Type | Method and Description |
|---|---|
List<AbstractJob> |
Workflow.getJobs()
get all jobs in current workflow
|
| Modifier and Type | Method and Description |
|---|---|
void |
Workflow.addJobs(AbstractJob job)
add job to the workflow
|
void |
AbstractJob.addParent(AbstractJob parent)
add a parent
|
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