public class OozieProvisionFileJob extends OozieJob
children, jobObj, maxMemorySgeParamFormat, metadataWriteback, okTo, oozie_working_dir, parentAccessionFiles, parentAccessions, parents, SCRIPTS_SUBDIR, scriptsDir, seqwareJar, seqwareJarPath, SGE_MAX_MEMORY_PARAM_VARIABLE, SGE_THREADS_PARAM_VARIABLE, SGE_XMLNS, threadsSgeParamFormat, useSge, WF_XMLNS, wfrAccession, wfrAncesstor| Constructor and Description |
|---|
OozieProvisionFileJob(AbstractJob job,
SqwFile file,
String name,
String oozie_working_dir,
boolean useSge,
File seqwareJar,
String slotsSgeParamFormat,
String maxMemorySgeParamFormat,
StringTruncator truncator) |
| Modifier and Type | Method and Description |
|---|---|
protected org.jdom.Element |
createJavaElement() |
protected org.jdom.Element |
createSgeElement() |
ArrayList<String> |
generateRunnerLine() |
String |
getMetadataOutputPrefix() |
String |
getOutputDir() |
void |
setMetadataOutputPrefix(String metadataOutputPrefix) |
void |
setOutputDir(String outputDir) |
add, add, addParent, addParentAccessionFile, addProp, annotationFileName, compareTo, concat, createPathToJava, emitAnnotations, emitOptionsFile, equals, file, getAccessionFile, getChildren, getJobObject, getLongName, getOkTo, getOozieWorkingDir, getParents, getScriptsDir, getShortName, getWorkflowRunAccession, hasFork, hashCode, hasJoin, hasMetadataWriteback, isUseCheckFile, isWorkflowRunAncesstor, optsFileName, runnerFileName, runnerMetaDataArgs, scriptsDir, serializeXML, setLongName, setMetadataWriteback, setOkTo, setParentAccessions, setUseCheckFile, setWorkflowRunAccession, setWorkflowRunAncesstor, toString, write, writeScriptpublic OozieProvisionFileJob(AbstractJob job, SqwFile file, String name, String oozie_working_dir, boolean useSge, File seqwareJar, String slotsSgeParamFormat, String maxMemorySgeParamFormat, StringTruncator truncator)
protected org.jdom.Element createSgeElement()
createSgeElement in class OozieJobprotected org.jdom.Element createJavaElement()
createJavaElement in class OozieJobpublic String getOutputDir()
public void setOutputDir(String outputDir)
public String getMetadataOutputPrefix()
public void setMetadataOutputPrefix(String metadataOutputPrefix)
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