public class OozieBashJob extends OozieJob
children, jobObj, maxMemorySgeParamFormat, metadataWriteback, okTo, oozie_working_dir, parentAccessionFiles, parentAccessions, parents, SCRIPTS_SUBDIR, scriptsDir, seqwareJar, seqwareJarPath, SGE_MAX_MEMORY_PARAM_VARIABLE, SGE_THREADS_PARAM_VARIABLE, SGE_XMLNS, threadsSgeParamFormat, useSge, WF_XMLNS, wfrAccession, wfrAncesstor| Constructor and Description |
|---|
OozieBashJob(AbstractJob job,
String name,
String oozie_working_dir,
boolean useSge,
File seqwareJar,
String threadsSgeParamFormat,
String maxMemorySgeParamFormat,
StringTruncator truncator) |
| Modifier and Type | Method and Description |
|---|---|
protected org.jdom.Element |
createJavaElement() |
protected org.jdom.Element |
createSgeElement() |
ArrayList<String> |
generateRunnerLine() |
File |
getJobScript() |
static String |
scriptFileName(String jobName) |
add, add, addParent, addParentAccessionFile, addProp, annotationFileName, compareTo, concat, createPathToJava, emitAnnotations, emitOptionsFile, equals, file, getAccessionFile, getChildren, getJobObject, getLongName, getOkTo, getOozieWorkingDir, getParents, getScriptsDir, getShortName, getWorkflowRunAccession, hasFork, hashCode, hasJoin, hasMetadataWriteback, isUseCheckFile, isWorkflowRunAncesstor, optsFileName, runnerFileName, runnerMetaDataArgs, scriptsDir, serializeXML, setLongName, setMetadataWriteback, setOkTo, setParentAccessions, setUseCheckFile, setWorkflowRunAccession, setWorkflowRunAncesstor, toString, write, writeScriptpublic OozieBashJob(AbstractJob job, String name, String oozie_working_dir, boolean useSge, File seqwareJar, String threadsSgeParamFormat, String maxMemorySgeParamFormat, StringTruncator truncator)
protected org.jdom.Element createSgeElement()
createSgeElement in class OozieJobprotected org.jdom.Element createJavaElement()
createJavaElement in class OozieJobpublic File getJobScript()
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