public class BatchedOozieProvisionFileJob extends OozieJob
children, jobObj, maxMemorySgeParamFormat, metadataWriteback, okTo, oozie_working_dir, parentAccessionFiles, parentAccessions, parents, SCRIPTS_SUBDIR, scriptsDir, seqwareJar, seqwareJarPath, SGE_MAX_MEMORY_PARAM_VARIABLE, SGE_THREADS_PARAM_VARIABLE, SGE_XMLNS, threadsSgeParamFormat, useSge, WF_XMLNS, wfrAccession, wfrAncesstor| Constructor and Description |
|---|
BatchedOozieProvisionFileJob(AbstractJob job,
String name,
String oozie_working_dir,
boolean useSge,
File seqwareJar,
String threadsSgeParamFormat,
String maxMemorySgeParamFormat,
StringTruncator truncator) |
| Modifier and Type | Method and Description |
|---|---|
void |
attachProvisionFileJob(OozieProvisionFileJob job) |
protected org.jdom.Element |
createJavaElement() |
protected org.jdom.Element |
createSgeElement() |
List<String> |
getAccessionFile() |
int |
getBatchSize() |
add, add, addParent, addParentAccessionFile, addProp, annotationFileName, compareTo, concat, createPathToJava, emitAnnotations, emitOptionsFile, equals, file, getChildren, getJobObject, getLongName, getOkTo, getOozieWorkingDir, getParents, getScriptsDir, getShortName, getWorkflowRunAccession, hasFork, hashCode, hasJoin, hasMetadataWriteback, isUseCheckFile, isWorkflowRunAncesstor, optsFileName, runnerFileName, runnerMetaDataArgs, scriptsDir, serializeXML, setLongName, setMetadataWriteback, setOkTo, setParentAccessions, setUseCheckFile, setWorkflowRunAccession, setWorkflowRunAncesstor, toString, write, writeScriptpublic BatchedOozieProvisionFileJob(AbstractJob job, String name, String oozie_working_dir, boolean useSge, File seqwareJar, String threadsSgeParamFormat, String maxMemorySgeParamFormat, StringTruncator truncator)
protected org.jdom.Element createSgeElement()
createSgeElement in class OozieJobprotected org.jdom.Element createJavaElement()
createJavaElement in class OozieJobpublic void attachProvisionFileJob(OozieProvisionFileJob job)
public int getBatchSize()
public List<String> getAccessionFile()
getAccessionFile in class OozieJobCopyright © 2015 SeqWare. All rights reserved.