1. Introduction to SeqWare
  2. Installation
  3. Getting Started
  4. SeqWare Pipeline
  5. SeqWare MetaDB
  6. SeqWare Portal
  7. SeqWare Web Service
  8. SeqWare Query Engine
  9. Glossary
  10. Frequently Asked Questions
  11. APIs
  12. Source Code
  13. Plugins
  14. Modules
  15. Advanced Topics
    1. Updating SeqWare
    2. Monitoring Oozie
    3. Setting up a host as a SeqWare client
    4. Command-line tab-completion for SeqWare

Advanced Topics

Here you will find a list of advanced SeqWare topics.

Updating SeqWare

If you already have SeqWare installed and would like to update to a newer version, please see this guide: Updating SeqWare

Monitoring Oozie

If you wish to monitor Oozie from the command line, please follow these instructions.

Setting up a host as a SeqWare client

To set up a seqware client on your machine, see here.

Command-line tab-completion for SeqWare

To make it easier to use SeqWare, you can install a bash completion script that will help your shell auto-complete SeqWare commands with the TAB key. See here, for further instructions.