| Package | Description |
|---|---|
| net.sourceforge.seqware.pipeline.workflowV2 |
Back-end for the Java workflow language and Oozie engine.
|
| net.sourceforge.seqware.pipeline.workflowV2.engine.oozie.object |
Implementation of workflow steps for Oozie.
|
| net.sourceforge.seqware.pipeline.workflowV2.model |
Classes that implement the tasks within workflows.
|
| Modifier and Type | Method and Description |
|---|---|
SqwFile |
AbstractWorkflowDataModel.createFile(String name)
Creates a sqwfile attached to the workflow as a whole for provisioning.
|
| Modifier and Type | Method and Description |
|---|---|
Map<String,SqwFile> |
AbstractWorkflowDataModel.getFiles() |
Map<String,SqwFile> |
AbstractWorkflowDataModel.setupFiles()
to be Overridden by the workflow author the place to specify inputs and outputs to the program also, a user can specify inputs and
outputs on jobs directly in which case they are still provisioned properly with respect to the job (inputs before, outputs after)
when you define inputs/outputs here they are provisioned before all jobs and after all jobs respectively
|
| Constructor and Description |
|---|
OozieProvisionFileJob(AbstractJob job,
SqwFile file,
String name,
String oozie_working_dir,
boolean useSge,
File seqwareJar,
String slotsSgeParamFormat,
String maxMemorySgeParamFormat,
StringTruncator truncator) |
| Modifier and Type | Method and Description |
|---|---|
Collection<SqwFile> |
AbstractJob.getFiles()
This should only be called from the back-end and should not be called by workflow developers.
|
| Modifier and Type | Method and Description |
|---|---|
void |
AbstractJob.addFile(SqwFile file)
This adds a file specifically to a job for provisioning.
|
void |
Job.addFile(SqwFile file)
add a job specific file
|
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