Method Detail

• addFile

  void addFile(SqwFile file)

  add a job specific file

  Parameters:

  file -

• setCommand

  Command setCommand(String cmd)

  set the job command

  Parameters:

  cmd -

  Returns:

• getCommand

  Command getCommand()

  Returns:

  the job command object

• addParent

  Job addParent(Job parent)

  add job's parent

  Parameters:

  parent -

  Returns:

• getParents

  Collection<Job> getParents()

  Returns:

  job's parents

• setMaxMemory

  Job setMaxMemory(String mem)

  set max memory

  Parameters:

  mem -

  Returns:

• getMaxMemory

  String getMaxMemory()

  Returns:

  the max memory

• setThreads

  Job setThreads(int count)

  set the max thread number

  Parameters:

  count -

  Returns:

• getThreads

  int getThreads()

  Returns:

  the max thread number

• setQueue

  Job setQueue(String queue)

  set the queue

  Parameters:

  queue -

  Returns:

• getQueue

  String getQueue()

  Returns:

  queue

• setHasMetadataWriteback

  void setHasMetadataWriteback(boolean metadata)

  job specific metadata is not supported yet

  Parameters:

  metadata -

• hasMetadataWriteback

  boolean hasMetadataWriteback()

  job specific metadata is not supported yet

  Returns:

• setParentAccessions

  void setParentAccessions(Collection<String> parentAccessions)

  set parent accessiosns for the job

  Parameters:

  parentAccessions -

• isLocal

  boolean isLocal()

  Whether this job should run locally instead of out on a cluster.

  Returns:

  true if it will run locally

• setLocal

  void setLocal()

  Sets this job to run locally.

• setLocal

  void setLocal(boolean runLocal)

  Sets whether this job should run locally.

  Parameters:

  runLocal - true to run locally, false otherwise

• getAnnotations

  Map<String,String> getAnnotations()

  Set arbitrary key-value annotations on jobs.

  Returns: