| Package | Description |
|---|---|
| io.seqware.common.model |
Unify status Strings across SeqWare.
|
| net.sourceforge.seqware.common.dao |
More hibernate auto-generated.
|
| net.sourceforge.seqware.common.dao.hibernate |
More hibernate auto-generated.
|
| net.sourceforge.seqware.common.hibernate |
Looks like utility classes for navigating the metadb.
|
| net.sourceforge.seqware.common.metadata |
Critical classes that effectively convert API calls into actions against the DB and web service.
|
| net.sourceforge.seqware.common.model |
Hibernate model classes for the metadb.
|
| net.sourceforge.seqware.pipeline.deciders |
BasicDecider.
|
| Modifier and Type | Method and Description |
|---|---|
static WorkflowRunStatus |
WorkflowRunStatus.valueOf(String name)
Returns the enum constant of this type with the specified name.
|
static WorkflowRunStatus[] |
WorkflowRunStatus.values()
Returns an array containing the constants of this enum type, in
the order they are declared.
|
| Modifier and Type | Method and Description |
|---|---|
int |
StudyDAO.getStatusCount(Study study,
WorkflowRunStatus status)
Count the number of workflow runs with the given status, under the given study
|
| Modifier and Type | Method and Description |
|---|---|
int |
StudyDAOHibernate.getStatusCount(Study study,
WorkflowRunStatus status)
Count the number of workflow runs with the given status, under the given study
|
| Modifier and Type | Method and Description |
|---|---|
Collection<WorkflowRunReportRow> |
WorkflowRunReport.getRunsByStatus(WorkflowRunStatus status) |
void |
WorkflowRunReport.setStatus(WorkflowRunStatus status) |
| Modifier and Type | Method and Description |
|---|---|
protected static void |
MetadataWS.convertParamsToWorkflowRun(WorkflowRun wr,
String pegasusCmd,
String workflowTemplate,
WorkflowRunStatus status,
String statusCmd,
String workingDirectory,
String dax,
String ini,
String host,
String stdErr,
String stdOut,
String workflowEngine,
Set<Integer> inputFiles) |
String |
MetadataWS.getWorkflowRunReport(Integer workflowSWID,
WorkflowRunStatus status,
Date earliestDate,
Date latestDate) |
String |
Metadata.getWorkflowRunReport(Integer workflowSWID,
WorkflowRunStatus status,
Date earliestDate,
Date latestDate) |
String |
MetadataNoConnection.getWorkflowRunReport(Integer workflowSWID,
WorkflowRunStatus status,
Date earliestDate,
Date latestDate) |
String |
MetadataDB.getWorkflowRunReport(Integer workflowSWID,
WorkflowRunStatus status,
Date earliestDate,
Date latestDate) |
String |
MetadataInMemory.getWorkflowRunReport(Integer workflowSWID,
WorkflowRunStatus status,
Date earliestDate,
Date latestDate) |
String |
MetadataWS.getWorkflowRunReport(WorkflowRunStatus status,
Date earliestDate,
Date latestDate)
getWorkflowRunReport.
|
String |
Metadata.getWorkflowRunReport(WorkflowRunStatus status,
Date earliestDate,
Date latestDate)
getWorkflowRunReport.
|
String |
MetadataNoConnection.getWorkflowRunReport(WorkflowRunStatus status,
Date earliestDate,
Date latestDate) |
String |
MetadataDB.getWorkflowRunReport(WorkflowRunStatus status,
Date earliestDate,
Date latestDate) |
String |
MetadataInMemory.getWorkflowRunReport(WorkflowRunStatus status,
Date earliestDate,
Date latestDate) |
List<WorkflowRun> |
MetadataWS.getWorkflowRunsByStatus(WorkflowRunStatus status)
getWorkflowRunsByStatus.
|
List<WorkflowRun> |
Metadata.getWorkflowRunsByStatus(WorkflowRunStatus status)
getWorkflowRunsByStatus.
|
List<WorkflowRun> |
MetadataNoConnection.getWorkflowRunsByStatus(WorkflowRunStatus status)
getWorkflowRunsByStatus.
|
List<WorkflowRun> |
MetadataDB.getWorkflowRunsByStatus(WorkflowRunStatus status)
getWorkflowRunsByStatus.
|
List<WorkflowRun> |
MetadataInMemory.getWorkflowRunsByStatus(WorkflowRunStatus status) |
ReturnValue |
MetadataWS.update_workflow_run(int workflowRunId,
String pegasusCmd,
String workflowTemplate,
WorkflowRunStatus status,
String statusCmd,
String workingDirectory,
String dax,
String ini,
String host,
String stdErr,
String stdOut,
String workflowEngine,
Set<Integer> inputFiles)
update_workflow_run.
|
ReturnValue |
Metadata.update_workflow_run(int workflowRunId,
String pegasusCmd,
String workflowTemplate,
WorkflowRunStatus status,
String statusCmd,
String workingDirectory,
String dax,
String ini,
String host,
String stdErr,
String stdOut,
String workflowEngine,
Set<Integer> inputFiles)
update_workflow_run.
|
ReturnValue |
MetadataNoConnection.update_workflow_run(int workflowRunId,
String pegasusCmd,
String workflowTemplate,
WorkflowRunStatus status,
String statusCmd,
String workingDirectory,
String dax,
String ini,
String host,
String stdErr,
String stdOut,
String workflowEngine,
Set<Integer> inputFiles)
update_workflow_run.
|
ReturnValue |
MetadataDB.update_workflow_run(int workflowRunId,
String pegasusCmd,
String workflowTemplate,
WorkflowRunStatus status,
String statusCmd,
String workingDirectory,
String dax,
String ini,
String host,
String stdErr,
String stdOut,
String workflowengine,
Set<Integer> inputFiles)
update_workflow_run.
|
ReturnValue |
MetadataInMemory.update_workflow_run(int workflowRunId,
String pegasusCmd,
String workflowTemplate,
WorkflowRunStatus status,
String statusCmd,
String workingDirectory,
String dax,
String ini,
String host,
String stdErr,
String stdOut,
String workflowEngine,
Set<Integer> inputFiles) |
| Modifier and Type | Method and Description |
|---|---|
WorkflowRunStatus |
WorkflowRun.getStatus()
Getter for the field
status. |
| Modifier and Type | Method and Description |
|---|---|
void |
WorkflowRun.setStatus(WorkflowRunStatus status)
Setter for the field
status. |
| Modifier and Type | Method and Description |
|---|---|
protected BasicDecider.PREVIOUS_RUN_STATUS |
BasicDecider.determineStatus(WorkflowRunStatus generateStatus)
Map a normal status to whether a workflow run completed, failed, or other (submitted, pending, etc.) (the states that we care about
for the decider)
|
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