| Package | Description |
|---|---|
| net.sourceforge.seqware.common.business |
Looks like auto-generated classes for Hibernate.
|
| net.sourceforge.seqware.common.business.impl |
Looks like auto-generated implementation for Hibernate classes.
|
| net.sourceforge.seqware.common.dao |
More hibernate auto-generated.
|
| net.sourceforge.seqware.common.dao.hibernate |
More hibernate auto-generated.
|
| net.sourceforge.seqware.common.metadata |
Critical classes that effectively convert API calls into actions against the DB and web service.
|
| net.sourceforge.seqware.common.model |
Hibernate model classes for the metadb.
|
| net.sourceforge.seqware.common.model.lists |
Looks like various container classes for XML serialization.
|
| Modifier and Type | Method and Description |
|---|---|
Organism |
OrganismService.findByID(Integer id)
findByID.
|
Organism |
OrganismService.updateDetached(Organism organism)
updateDetached.
|
| Modifier and Type | Method and Description |
|---|---|
List<Organism> |
OrganismService.list()
list.
|
List<Organism> |
OrganismService.list(Registration registration)
list.
|
| Modifier and Type | Method and Description |
|---|---|
Organism |
OrganismService.updateDetached(Organism organism)
updateDetached.
|
| Modifier and Type | Method and Description |
|---|---|
Organism |
OrganismServiceImpl.findByID(Integer id)
findByID.
|
Organism |
OrganismServiceImpl.updateDetached(Organism organism)
updateDetached.
|
| Modifier and Type | Method and Description |
|---|---|
List<Organism> |
OrganismServiceImpl.list()
list.
|
List<Organism> |
OrganismServiceImpl.list(Registration registration)
list.
|
| Modifier and Type | Method and Description |
|---|---|
Organism |
OrganismServiceImpl.updateDetached(Organism organism)
updateDetached.
|
| Modifier and Type | Method and Description |
|---|---|
Organism |
OrganismDAO.findByID(Integer id)
findByID.
|
Organism |
OrganismDAO.updateDetached(Organism organism)
updateDetached.
|
| Modifier and Type | Method and Description |
|---|---|
List<Organism> |
OrganismDAO.list()
list.
|
List<Organism> |
OrganismDAO.list(Registration registration)
list.
|
| Modifier and Type | Method and Description |
|---|---|
Organism |
OrganismDAO.updateDetached(Organism organism)
updateDetached.
|
| Modifier and Type | Method and Description |
|---|---|
Organism |
OrganismDAOHibernate.findByID(Integer id)
findByID.
|
Organism |
OrganismDAOHibernate.updateDetached(Organism organism)
updateDetached.
|
| Modifier and Type | Method and Description |
|---|---|
List<Organism> |
OrganismDAOHibernate.list()
list.
|
List<Organism> |
OrganismDAOHibernate.list(Registration registration)
list.
|
| Modifier and Type | Method and Description |
|---|---|
Organism |
OrganismDAOHibernate.updateDetached(Organism organism)
updateDetached.
|
| Modifier and Type | Method and Description |
|---|---|
List<Organism> |
MetadataWS.getOrganisms() |
List<Organism> |
Metadata.getOrganisms()
getOrganisms.
|
List<Organism> |
MetadataNoConnection.getOrganisms() |
List<Organism> |
MetadataDB.getOrganisms() |
List<Organism> |
MetadataInMemory.getOrganisms() |
| Modifier and Type | Method and Description |
|---|---|
Organism |
Sample.getOrganism()
Getter for the field
organism. |
| Modifier and Type | Method and Description |
|---|---|
int |
Organism.compareTo(Organism that) |
void |
Sample.setOrganism(Organism organism)
Setter for the field
organism. |
| Modifier and Type | Field and Description |
|---|---|
protected List<Organism> |
OrganismList.tList |
| Modifier and Type | Method and Description |
|---|---|
List<Organism> |
OrganismList.getList()
getList.
|
| Modifier and Type | Method and Description |
|---|---|
void |
OrganismList.add(Organism ex)
add.
|
| Modifier and Type | Method and Description |
|---|---|
void |
OrganismList.setList(List<Organism> list)
setList.
|
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