| Package | Description | 
|---|---|
| net.sourceforge.seqware.pipeline.plugins.checkdb | 
 Check the metadb for errors in convention and structure. 
 | 
| net.sourceforge.seqware.pipeline.plugins.checkdb.plugins | 
 Basic checks for all SeqWare databases as well as examples for site specific checks. 
 | 
| Modifier and Type | Method and Description | 
|---|---|
void | 
CheckDBPluginInterface.check(SelectQueryRunner qRunner,
     SortedMap<CheckDBPluginInterface.Level,Set<String>> results)  | 
| Modifier and Type | Method and Description | 
|---|---|
void | 
AttributePlugin.check(SelectQueryRunner qRunner,
     SortedMap<CheckDBPluginInterface.Level,Set<String>> result)  | 
void | 
WorkflowRunConventionsPlugin.check(SelectQueryRunner qRunner,
     SortedMap<CheckDBPluginInterface.Level,Set<String>> result)  | 
void | 
SampleHierarchyPlugin.check(SelectQueryRunner qRunner,
     SortedMap<CheckDBPluginInterface.Level,Set<String>> result)  | 
void | 
OrphanCheckerPlugin.check(SelectQueryRunner qRunner,
     SortedMap<CheckDBPluginInterface.Level,Set<String>> result)  | 
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