| Package | Description |
|---|---|
| net.sourceforge.seqware.pipeline.plugins.checkdb |
Check the metadb for errors in convention and structure.
|
| net.sourceforge.seqware.pipeline.plugins.checkdb.plugins |
Basic checks for all SeqWare databases as well as examples for site specific checks.
|
| Modifier and Type | Method and Description |
|---|---|
static CheckDBPluginInterface.Level |
CheckDBPluginInterface.Level.valueOf(String name)
Returns the enum constant of this type with the specified name.
|
static CheckDBPluginInterface.Level[] |
CheckDBPluginInterface.Level.values()
Returns an array containing the constants of this enum type, in
the order they are declared.
|
| Modifier and Type | Method and Description |
|---|---|
static void |
CheckDB.processOutput(SortedMap<CheckDBPluginInterface.Level,Set<String>> result,
CheckDBPluginInterface.Level level,
String description,
List<Integer> list)
Convenience method for processing output and appending it to the warning map
|
| Modifier and Type | Method and Description |
|---|---|
void |
CheckDBPluginInterface.check(SelectQueryRunner qRunner,
SortedMap<CheckDBPluginInterface.Level,Set<String>> results) |
static void |
CheckDB.processOutput(SortedMap<CheckDBPluginInterface.Level,Set<String>> result,
CheckDBPluginInterface.Level level,
String description,
List<Integer> list)
Convenience method for processing output and appending it to the warning map
|
| Modifier and Type | Method and Description |
|---|---|
void |
AttributePlugin.check(SelectQueryRunner qRunner,
SortedMap<CheckDBPluginInterface.Level,Set<String>> result) |
void |
WorkflowRunConventionsPlugin.check(SelectQueryRunner qRunner,
SortedMap<CheckDBPluginInterface.Level,Set<String>> result) |
void |
SampleHierarchyPlugin.check(SelectQueryRunner qRunner,
SortedMap<CheckDBPluginInterface.Level,Set<String>> result) |
void |
OrphanCheckerPlugin.check(SelectQueryRunner qRunner,
SortedMap<CheckDBPluginInterface.Level,Set<String>> result) |
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