RunInfo (SeqWare 1.1.2 API)

java.lang.Object
- net.sourceforge.seqware.pipeline.plugins.batchmetadatainjection.RunInfo

```
public class RunInfo
extends Object
```
Author:

mtaschuk

Constructor Summary

Constructors
Constructor and Description

RunInfo()

Constructors
Constructor and Description
`RunInfo()`

Method Summary

Methods
Modifier and Type	Method and Description
`boolean`	`equals(Object obj)`
`String`	`getAssayType()` Get the value of assayType
`Set<TagValueUnit>`	`getExperimentAttributes()` Get the value of experimentAttributes
`String`	`getExperimentDescription()` Get the value of experimentDescription
`String`	`getExperimentName()` Get the value of experimentName
`Set<LaneInfo>`	`getLanes()` Get the value of lanes
`String`	`getPlatformId()`
`Set<TagValueUnit>`	`getRunAttributes()` Get the value of runAttributes
`String`	`getRunDescription()` Get the value of runDescription
`String`	`getRunFilePath()` Get the value of runFilePath
`String`	`getRunName()` Get the value of runName
`boolean`	`getRunSkip()` Get the value of runSkip
`SequencerRunStatus`	`getStatus()` Get the value of the sequencer run status
`Set<TagValueUnit>`	`getStudyAttributes()` Get the value of studyAttributes
`String`	`getStudyCenterName()` Get the value of studyCenterName
`String`	`getStudyCenterProject()` Get the value of studyCenterProject
`String`	`getStudyDescription()` Get the value of studyDescription
`String`	`getStudyTitle()` Get the value of studyTitle
`String`	`getStudyType()`
`String`	`getWorkflowType()` Get the value of workflowType
`int`	`hashCode()`
`boolean`	`isPairedEnd()` Get the value of pairedEnd
`void`	`print(Appendable writer, Metadata metadata)`
`void`	`setAssayType(String assayType)` Set the value of assayType
`void`	`setExperimentAttributes(Set<TagValueUnit> experimentAttributes)` Set the value of experimentAttributes
`void`	`setExperimentDescription(String experimentDescription)` Set the value of experimentDescription
`void`	`setExperimentName(String experimentName)` Set the value of experimentName
`void`	`setLanes(Set<LaneInfo> lanes)` Set the value of lanes
`void`	`setPairedEnd(boolean pairedEnd)` Set the value of pairedEnd
`void`	`setPlatformId(int platformId)`
`void`	`setRunAttribute(String tag, String value)` Adds a new run attribute if the tag does not exist for this run, or changes the value of an existing run attribute.
`void`	`setRunAttributes(Set<TagValueUnit> runAttributes)` Set the value of runAttributes
`void`	`setRunDescription(String runDescription)` Set the value of runDescription
`void`	`setRunFilePath(String runFilePath)` Set the value of runFilePath
`void`	`setRunName(String runName)` Set the value of runName
`void`	`setRunSkip(boolean runSkip)` Set the value of runSkip
`void`	`setStatus(SequencerRunStatus status)` Set the value of the sequencer run status
`void`	`setStudyAttribute(String tag, String value)` Adds a new study attribute if the tag does not exist for this study, or changes the value of an existing study attribute.
`void`	`setStudyAttributes(Set<TagValueUnit> studyAttributes)` Set the value of studyAttributes
`void`	`setStudyCenterName(String studyCenterName)` Set the value of studyCenterName
`void`	`setStudyCenterProject(String studyCenterProject)` Set the value of studyCenterProject
`void`	`setStudyDescription(String studyDescription)` Set the value of studyDescription
`void`	`setStudyTitle(String studyTitle)` Set the value of studyTitle
`void`	`setStudyType(int studyType)`
`void`	`setWorkflowType(String workflowType)` Set the value of workflowType
`String`	`toString()`

Methods inherited from class java.lang.Object
clone, finalize, getClass, notify, notifyAll, wait, wait, wait

- Constructor Detail
  - RunInfo
```
public RunInfo()
```
- Method Detail
  - getStatus
```
public SequencerRunStatus getStatus()
```
    Get the value of the sequencer run status
    
    Returns:
    the status. Complete or if not complete, then null
  - setStatus
```
public void setStatus(SequencerRunStatus status)
```
    Set the value of the sequencer run status
    
    Parameters:
    status - the status
  - getRunFilePath
```
public String getRunFilePath()
```
    Get the value of runFilePath
    
    Returns:
    the value of runFilePath
  - setRunFilePath
```
public void setRunFilePath(String runFilePath)
```
    Set the value of runFilePath
    
    Parameters:
    runFilePath - new value of runFilePath
  - getExperimentDescription
```
public String getExperimentDescription()
```
    Get the value of experimentDescription
    
    Returns:
    the value of experimentDescription
  - setExperimentDescription
```
public void setExperimentDescription(String experimentDescription)
```
    Set the value of experimentDescription
    
    Parameters:
    experimentDescription - new value of experimentDescription
  - getRunDescription
```
public String getRunDescription()
```
    Get the value of runDescription
    
    Returns:
    the value of runDescription
  - setRunDescription
```
public void setRunDescription(String runDescription)
```
    Set the value of runDescription
    
    Parameters:
    runDescription - new value of runDescription
  - isPairedEnd
```
public boolean isPairedEnd()
```
    Get the value of pairedEnd
    
    Returns:
    the value of pairedEnd
  - setPairedEnd
```
public void setPairedEnd(boolean pairedEnd)
```
    Set the value of pairedEnd
    
    Parameters:
    pairedEnd - new value of pairedEnd
  - getRunSkip
```
public boolean getRunSkip()
```
    Get the value of runSkip
    
    Returns:
    the value of runSkip
  - setRunSkip
```
public void setRunSkip(boolean runSkip)
```
    Set the value of runSkip
    
    Parameters:
    runSkip - new value of runSkip
  - getLanes
```
public Set<LaneInfo> getLanes()
```
    Get the value of lanes
    
    Returns:
    the value of lanes
  - setLanes
```
public void setLanes(Set<LaneInfo> lanes)
```
    Set the value of lanes
    
    Parameters:
    lanes - new value of lanes
  - getPlatformId
```
public String getPlatformId()
```
  - setPlatformId
```
public void setPlatformId(int platformId)
```
  - getStudyType
```
public String getStudyType()
```
  - setStudyType
```
public void setStudyType(int studyType)
```
  - getRunAttributes
```
public Set<TagValueUnit> getRunAttributes()
```
    Get the value of runAttributes
    
    Returns:
    the value of runAttributes
  - setRunAttribute
```
public void setRunAttribute(String tag,
                   String value)
```
    Adds a new run attribute if the tag does not exist for this run, or changes the value of an existing run attribute.
    
    Parameters:
    tag - the key of the attribute
    value - the value of the attribute
  - setRunAttributes
```
public void setRunAttributes(Set<TagValueUnit> runAttributes)
```
    Set the value of runAttributes
    
    Parameters:
    runAttributes - new value of runAttributes
  - getStudyAttributes
```
public Set<TagValueUnit> getStudyAttributes()
```
    Get the value of studyAttributes
    
    Returns:
    the value of studyAttributes
  - setStudyAttribute
```
public void setStudyAttribute(String tag,
                     String value)
```
    Adds a new study attribute if the tag does not exist for this study, or changes the value of an existing study attribute.
    
    Parameters:
    tag - the key of the attribute
    value - the value of the attribute
  - setStudyAttributes
```
public void setStudyAttributes(Set<TagValueUnit> studyAttributes)
```
    Set the value of studyAttributes
    
    Parameters:
    studyAttributes - new value of studyAttributes
  - getExperimentAttributes
```
public Set<TagValueUnit> getExperimentAttributes()
```
    Get the value of experimentAttributes
    
    Returns:
    the value of experimentAttributes
  - setExperimentAttributes
```
public void setExperimentAttributes(Set<TagValueUnit> experimentAttributes)
```
    Set the value of experimentAttributes
    
    Parameters:
    experimentAttributes - new value of experimentAttributes
  - getStudyCenterProject
```
public String getStudyCenterProject()
```
    Get the value of studyCenterProject
    
    Returns:
    the value of studyCenterProject
  - setStudyCenterProject
```
public void setStudyCenterProject(String studyCenterProject)
```
    Set the value of studyCenterProject
    
    Parameters:
    studyCenterProject - new value of studyCenterProject
  - getStudyCenterName
```
public String getStudyCenterName()
```
    Get the value of studyCenterName
    
    Returns:
    the value of studyCenterName
  - setStudyCenterName
```
public void setStudyCenterName(String studyCenterName)
```
    Set the value of studyCenterName
    
    Parameters:
    studyCenterName - new value of studyCenterName
  - getStudyDescription
```
public String getStudyDescription()
```
    Get the value of studyDescription
    
    Returns:
    the value of studyDescription
  - setStudyDescription
```
public void setStudyDescription(String studyDescription)
```
    Set the value of studyDescription
    
    Parameters:
    studyDescription - new value of studyDescription
  - getAssayType
```
public String getAssayType()
```
    Get the value of assayType
    
    Returns:
    the value of assayType
  - setAssayType
```
public void setAssayType(String assayType)
```
    Set the value of assayType
    
    Parameters:
    assayType - new value of assayType
  - getWorkflowType
```
public String getWorkflowType()
```
    Get the value of workflowType
    
    Returns:
    the value of workflowType
  - setWorkflowType
```
public void setWorkflowType(String workflowType)
```
    Set the value of workflowType
    
    Parameters:
    workflowType - new value of workflowType
  - getExperimentName
```
public String getExperimentName()
```
    Get the value of experimentName
    
    Returns:
    the value of experimentName
  - setExperimentName
```
public void setExperimentName(String experimentName)
```
    Set the value of experimentName
    
    Parameters:
    experimentName - new value of experimentName
  - getRunName
```
public String getRunName()
```
    Get the value of runName
    
    Returns:
    the value of runName
  - setRunName
```
public void setRunName(String runName)
```
    Set the value of runName
    
    Parameters:
    runName - new value of runName
  - getStudyTitle
```
public String getStudyTitle()
```
    Get the value of studyTitle
    
    Returns:
    the value of studyTitle
  - setStudyTitle
```
public void setStudyTitle(String studyTitle)
```
    Set the value of studyTitle
    
    Parameters:
    studyTitle - new value of studyTitle
  - toString
```
public String toString()
```
    Overrides:
    
    toString in class Object
  - print
```
public void print(Appendable writer,
         Metadata metadata)
           throws IOException
```
    Throws:
    
    IOException
  - equals
```
public boolean equals(Object obj)
```
    Overrides:
    
    equals in class Object
  - hashCode
```
public int hashCode()
```
    Overrides:
    
    hashCode in class Object

Class RunInfo

Constructor Summary

Method Summary

Methods inherited from class java.lang.Object

Constructor Detail

RunInfo

Method Detail

getStatus

setStatus

getRunFilePath

setRunFilePath

getExperimentDescription

setExperimentDescription

getRunDescription

setRunDescription

isPairedEnd

setPairedEnd

getRunSkip

setRunSkip

getLanes

setLanes

getPlatformId

setPlatformId

getStudyType

setStudyType

getRunAttributes

setRunAttribute

setRunAttributes

getStudyAttributes

setStudyAttribute

setStudyAttributes

getExperimentAttributes

setExperimentAttributes

getStudyCenterProject

setStudyCenterProject

getStudyCenterName

setStudyCenterName

getStudyDescription

setStudyDescription

getAssayType

setAssayType

getWorkflowType

setWorkflowType

getExperimentName

setExperimentName

getRunName

setRunName

getStudyTitle

setStudyTitle

toString

print

equals

hashCode