| Package | Description |
|---|---|
| io.seqware.pipeline.api |
This package will store components of SeqWare that can be programmatically
called in order to manage the components of the SeqWare life-cycle.
|
| io.seqware.pipeline.engines.whitestar |
This is a simple reference implementation of a seqware engine used for development and debugging.
|
| io.seqware.pipeline.plugins |
Newly written SeqWare plugins
|
| io.seqware.pipeline.plugins.sanity |
Base classes for the sanity check tool.
|
| net.sourceforge.seqware.common.hibernate |
Looks like utility classes for navigating the metadb.
|
| net.sourceforge.seqware.common.metadata |
Critical classes that effectively convert API calls into actions against the DB and web service.
|
| net.sourceforge.seqware.common.model |
Hibernate model classes for the metadb.
|
| net.sourceforge.seqware.common.model.lists |
Looks like various container classes for XML serialization.
|
| net.sourceforge.seqware.common.module |
Utility classes really.
|
| net.sourceforge.seqware.common.util.filetools |
Tools for dealing with files.
|
| net.sourceforge.seqware.common.util.runtools |
Tools for running commands.
|
| net.sourceforge.seqware.pipeline.bundle |
Utility classes for interacting with workflow bundles.
|
| net.sourceforge.seqware.pipeline.decider |
Interface for deciders.
|
| net.sourceforge.seqware.pipeline.deciders |
BasicDecider.
|
| net.sourceforge.seqware.pipeline.module |
This package provides the SeqWare module interface and API, including
common code and classes.
|
| net.sourceforge.seqware.pipeline.modules |
Executables that can be called by workflows and users.
|
| net.sourceforge.seqware.pipeline.modules.utilities |
Modules that are used by workflows.
|
| net.sourceforge.seqware.pipeline.plugin |
Interface for plugins and the workflow launcher for some reason.
|
| net.sourceforge.seqware.pipeline.plugins |
Create and manipulate databases for extended testing.
|
| net.sourceforge.seqware.pipeline.plugins.checkdb |
Check the metadb for errors in convention and structure.
|
| net.sourceforge.seqware.pipeline.plugins.deletion |
Implementation for the deletion tool that can delete workflow runs.
|
| net.sourceforge.seqware.pipeline.plugins.filelinker |
Import files into the metadb.
|
| net.sourceforge.seqware.pipeline.plugins.fileprovenance |
Dump out the file provenance report to the user.
|
| net.sourceforge.seqware.pipeline.workflowV2.engine.oozie |
Implementation of the Oozie workflow engine.
|
| Class and Description |
|---|
| ReturnValue
Return values > 0 are errors that will cause the runner to exit.
|
| Class and Description |
|---|
| ReturnValue
Return values > 0 are errors that will cause the runner to exit.
|
| Class and Description |
|---|
| ReturnValue
Return values > 0 are errors that will cause the runner to exit.
|
| Class and Description |
|---|
| ReturnValue
Return values > 0 are errors that will cause the runner to exit.
|
| Class and Description |
|---|
| FileMetadata
This is a simple data structure to represent a file and it's metadata.
|
| ReturnValue
Return values > 0 are errors that will cause the runner to exit.
|
| Class and Description |
|---|
| ReturnValue
Return values > 0 are errors that will cause the runner to exit.
|
| Class and Description |
|---|
| ReturnValue
Return values > 0 are errors that will cause the runner to exit.
|
| Class and Description |
|---|
| ReturnValue
Return values > 0 are errors that will cause the runner to exit.
|
| Class and Description |
|---|
| FileMetadata
This is a simple data structure to represent a file and it's metadata.
|
| ReturnValue
Return values > 0 are errors that will cause the runner to exit.
|
| ReturnValue.ExitStatus |
| Class and Description |
|---|
| FileMetadata
This is a simple data structure to represent a file and it's metadata.
|
| ReturnValue
Return values > 0 are errors that will cause the runner to exit.
|
| Class and Description |
|---|
| ReturnValue
Return values > 0 are errors that will cause the runner to exit.
|
| Class and Description |
|---|
| ReturnValue
Return values > 0 are errors that will cause the runner to exit.
|
| Class and Description |
|---|
| ReturnValue
Return values > 0 are errors that will cause the runner to exit.
|
| Class and Description |
|---|
| FileMetadata
This is a simple data structure to represent a file and it's metadata.
|
| ReturnValue
Return values > 0 are errors that will cause the runner to exit.
|
| Class and Description |
|---|
| ReturnValue
Return values > 0 are errors that will cause the runner to exit.
|
| Class and Description |
|---|
| ReturnValue
Return values > 0 are errors that will cause the runner to exit.
|
| Class and Description |
|---|
| FileMetadata
This is a simple data structure to represent a file and it's metadata.
|
| ReturnValue
Return values > 0 are errors that will cause the runner to exit.
|
| Class and Description |
|---|
| ReturnValue
Return values > 0 are errors that will cause the runner to exit.
|
| Class and Description |
|---|
| FileMetadata
This is a simple data structure to represent a file and it's metadata.
|
| ReturnValue
Return values > 0 are errors that will cause the runner to exit.
|
| Class and Description |
|---|
| ReturnValue
Return values > 0 are errors that will cause the runner to exit.
|
| Class and Description |
|---|
| ReturnValue
Return values > 0 are errors that will cause the runner to exit.
|
| Class and Description |
|---|
| FileMetadata
This is a simple data structure to represent a file and it's metadata.
|
| Class and Description |
|---|
| ReturnValue
Return values > 0 are errors that will cause the runner to exit.
|
| Class and Description |
|---|
| ReturnValue
Return values > 0 are errors that will cause the runner to exit.
|
Copyright © 2015 SeqWare. All rights reserved.