| Package | Description | 
|---|---|
| net.sourceforge.seqware.common.business | 
 Looks like auto-generated classes for Hibernate. 
 | 
| net.sourceforge.seqware.common.business.impl | 
 Looks like auto-generated implementation for Hibernate classes. 
 | 
| net.sourceforge.seqware.common.dao | 
 More hibernate auto-generated. 
 | 
| net.sourceforge.seqware.common.dao.hibernate | 
 More hibernate auto-generated. 
 | 
| net.sourceforge.seqware.common.model | 
 Hibernate model classes for the metadb. 
 | 
| net.sourceforge.seqware.common.util.maptools | 
 Tools for converting ini files to maps. 
 | 
| net.sourceforge.solexatools.util | 
 Portal stuff, to be assessed. 
 | 
| Modifier and Type | Method and Description | 
|---|---|
WorkflowRunParam | 
WorkflowRunParamService.updateDetached(Registration registration,
              WorkflowRunParam workflowRunParam)
 updateDetached. 
 | 
WorkflowRunParam | 
WorkflowRunParamService.updateDetached(WorkflowRunParam workflowRunParam)
 updateDetached. 
 | 
| Modifier and Type | Method and Description | 
|---|---|
List<WorkflowRunParam> | 
WorkflowRunParamService.list()
 list. 
 | 
| Modifier and Type | Method and Description | 
|---|---|
void | 
WorkflowRunParamService.delete(WorkflowRunParam workflowRunParam)
 delete. 
 | 
void | 
WorkflowRunParamService.insert(Registration registration,
      WorkflowRunParam workflowRunParam)
 insert. 
 | 
void | 
WorkflowRunParamService.insert(WorkflowRunParam workflowRunParam)
 insert. 
 | 
void | 
WorkflowRunParamService.update(Registration registration,
      WorkflowRunParam workflowRunParam)
 update. 
 | 
void | 
WorkflowRunParamService.update(WorkflowRunParam workflowRunParam)
 update. 
 | 
WorkflowRunParam | 
WorkflowRunParamService.updateDetached(Registration registration,
              WorkflowRunParam workflowRunParam)
 updateDetached. 
 | 
WorkflowRunParam | 
WorkflowRunParamService.updateDetached(WorkflowRunParam workflowRunParam)
 updateDetached. 
 | 
| Modifier and Type | Method and Description | 
|---|---|
Integer | 
WorkflowRunService.insert(Registration registration,
      WorkflowRun workflowRun,
      SortedSet<WorkflowRunParam> workflowRunParams,
      Map<String,List<File>> allSelectedFiles)
 insert. 
 | 
Integer | 
WorkflowRunService.insert(WorkflowRun workflowRun,
      SortedSet<WorkflowRunParam> workflowRunParams,
      Map<String,List<File>> allSelectedFiles)
 insert. 
 | 
| Modifier and Type | Method and Description | 
|---|---|
WorkflowRunParam | 
WorkflowRunParamServiceImpl.updateDetached(Registration registration,
              WorkflowRunParam workflowRunParam)
 updateDetached. 
 | 
WorkflowRunParam | 
WorkflowRunParamServiceImpl.updateDetached(WorkflowRunParam workflowRunParam)
 updateDetached. 
 | 
| Modifier and Type | Method and Description | 
|---|---|
List<WorkflowRunParam> | 
WorkflowRunParamServiceImpl.list()
 list. 
 | 
| Modifier and Type | Method and Description | 
|---|---|
void | 
WorkflowRunParamServiceImpl.delete(WorkflowRunParam workflowRunParam)
 delete. 
 | 
void | 
WorkflowRunParamServiceImpl.insert(Registration registration,
      WorkflowRunParam workflowRunParam)
 insert. 
 | 
void | 
WorkflowRunParamServiceImpl.insert(WorkflowRunParam workflowRunParam)
 insert. 
 | 
void | 
WorkflowRunParamServiceImpl.update(Registration registration,
      WorkflowRunParam workflowRunParam)
 update. 
 | 
void | 
WorkflowRunParamServiceImpl.update(WorkflowRunParam workflowRunParam)
 update. 
 | 
WorkflowRunParam | 
WorkflowRunParamServiceImpl.updateDetached(Registration registration,
              WorkflowRunParam workflowRunParam)
 updateDetached. 
 | 
WorkflowRunParam | 
WorkflowRunParamServiceImpl.updateDetached(WorkflowRunParam workflowRunParam)
 updateDetached. 
 | 
| Modifier and Type | Method and Description | 
|---|---|
Integer | 
WorkflowRunServiceImpl.insert(Registration registration,
      WorkflowRun workflowRun,
      SortedSet<WorkflowRunParam> workflowRunParams,
      Map<String,List<File>> allSelectedFiles)
 insert. 
 | 
Integer | 
WorkflowRunServiceImpl.insert(WorkflowRun workflowRun,
      SortedSet<WorkflowRunParam> workflowRunParams,
      Map<String,List<File>> allSelectedFiles)
 insert. 
 | 
| Modifier and Type | Method and Description | 
|---|---|
WorkflowRunParam | 
WorkflowRunParamDAO.updateDetached(Registration registration,
              WorkflowRunParam workflowRunParam)
 updateDetached. 
 | 
WorkflowRunParam | 
WorkflowRunParamDAO.updateDetached(WorkflowRunParam workflowRunParam)
 updateDetached. 
 | 
| Modifier and Type | Method and Description | 
|---|---|
List<WorkflowRunParam> | 
WorkflowRunParamDAO.list()
 list. 
 | 
| Modifier and Type | Method and Description | 
|---|---|
void | 
WorkflowRunParamDAO.delete(WorkflowRunParam workflowRunParam)
 delete. 
 | 
void | 
WorkflowRunParamDAO.insert(Registration registration,
      WorkflowRunParam workflowRunParam)
 insert. 
 | 
void | 
WorkflowRunParamDAO.insert(WorkflowRunParam workflowRunParam)
 insert. 
 | 
void | 
WorkflowRunParamDAO.update(Registration registration,
      WorkflowRunParam workflowRunParam)
 update. 
 | 
void | 
WorkflowRunParamDAO.update(WorkflowRunParam workflowRunParam)
 update. 
 | 
WorkflowRunParam | 
WorkflowRunParamDAO.updateDetached(Registration registration,
              WorkflowRunParam workflowRunParam)
 updateDetached. 
 | 
WorkflowRunParam | 
WorkflowRunParamDAO.updateDetached(WorkflowRunParam workflowRunParam)
 updateDetached. 
 | 
| Modifier and Type | Method and Description | 
|---|---|
WorkflowRunParam | 
WorkflowRunParamDAOHibernate.updateDetached(Registration registration,
              WorkflowRunParam workflowRunParam)
 updateDetached. 
 | 
WorkflowRunParam | 
WorkflowRunParamDAOHibernate.updateDetached(WorkflowRunParam workflowRunParam)
 updateDetached. 
 | 
| Modifier and Type | Method and Description | 
|---|---|
List<WorkflowRunParam> | 
WorkflowRunParamDAOHibernate.list()
 list. 
 | 
| Modifier and Type | Method and Description | 
|---|---|
void | 
WorkflowRunParamDAOHibernate.delete(WorkflowRunParam workflowRunParam)
 delete. 
 | 
void | 
WorkflowRunParamDAOHibernate.insert(Registration registration,
      WorkflowRunParam workflowRunParam)
 insert. 
 | 
void | 
WorkflowRunParamDAOHibernate.insert(WorkflowRunParam workflowRunParam)
 insert. 
 | 
void | 
WorkflowRunParamDAOHibernate.update(Registration registration,
      WorkflowRunParam workflowRunParam)
 update. 
 | 
void | 
WorkflowRunParamDAOHibernate.update(WorkflowRunParam workflowRunParam)
 update. 
 | 
WorkflowRunParam | 
WorkflowRunParamDAOHibernate.updateDetached(Registration registration,
              WorkflowRunParam workflowRunParam)
 updateDetached. 
 | 
WorkflowRunParam | 
WorkflowRunParamDAOHibernate.updateDetached(WorkflowRunParam workflowRunParam)
 updateDetached. 
 | 
| Modifier and Type | Method and Description | 
|---|---|
SortedSet<WorkflowRunParam> | 
WorkflowRun.getWorkflowRunParams()
 Getter for the field  
workflowRunParams. | 
| Modifier and Type | Method and Description | 
|---|---|
int | 
WorkflowRunParam.compareTo(WorkflowRunParam that) | 
| Modifier and Type | Method and Description | 
|---|---|
void | 
WorkflowRun.setWorkflowRunParams(SortedSet<WorkflowRunParam> workflowRunParams)
 Setter for the field  
workflowRunParams. | 
| Modifier and Type | Method and Description | 
|---|---|
static SortedSet<WorkflowRunParam> | 
MapTools.createWorkflowRunParameters(HashMap<String,String> map)
Convert what looks like a map of ini key-value pairs into a SortedSet of WorkflowRunParams 
 | 
| Modifier and Type | Method and Description | 
|---|---|
static SortedSet<WorkflowRunParam> | 
LaunchWorkflowUtil.getWorkflowRunParam(SortedSet<WorkflowParam> params)
 getWorkflowRunParam. 
 | 
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