| Package | Description |
|---|---|
| net.sourceforge.seqware.common.business |
Looks like auto-generated classes for Hibernate.
|
| net.sourceforge.seqware.common.business.impl |
Looks like auto-generated implementation for Hibernate classes.
|
| net.sourceforge.seqware.common.dao |
More hibernate auto-generated.
|
| net.sourceforge.seqware.common.dao.hibernate |
More hibernate auto-generated.
|
| net.sourceforge.seqware.common.metadata |
Critical classes that effectively convert API calls into actions against the DB and web service.
|
| net.sourceforge.seqware.common.model |
Hibernate model classes for the metadb.
|
| net.sourceforge.seqware.common.model.lists |
Looks like various container classes for XML serialization.
|
| net.sourceforge.solexatools.util |
Portal stuff, to be assessed.
|
| net.sourceforge.solexatools.webapp.controller |
Portal stuff, to be assessed.
|
| Modifier and Type | Method and Description |
|---|---|
WorkflowParam |
WorkflowParamService.findByID(Integer id)
findByID.
|
WorkflowParam |
WorkflowParamService.updateDetached(Registration registration,
WorkflowParam workflowParam)
updateDetached.
|
WorkflowParam |
WorkflowParamService.updateDetached(WorkflowParam workflowParam)
updateDetached.
|
| Modifier and Type | Method and Description |
|---|---|
List<WorkflowParam> |
WorkflowParamService.list()
list.
|
| Modifier and Type | Method and Description |
|---|---|
void |
WorkflowParamService.delete(WorkflowParam workflowParam)
delete.
|
Integer |
WorkflowParamService.insert(Registration registration,
WorkflowParam workflowParam)
insert.
|
Integer |
WorkflowParamService.insert(WorkflowParam workflowParam)
Inserts a new WorkflowParam and returns its primary key.
|
void |
WorkflowParamService.update(Registration registration,
WorkflowParam workflowParam)
update.
|
void |
WorkflowParamService.update(WorkflowParam workflowParam)
update.
|
WorkflowParam |
WorkflowParamService.updateDetached(Registration registration,
WorkflowParam workflowParam)
updateDetached.
|
WorkflowParam |
WorkflowParamService.updateDetached(WorkflowParam workflowParam)
updateDetached.
|
| Modifier and Type | Method and Description |
|---|---|
WorkflowParam |
WorkflowParamServiceImpl.findByID(Integer id)
findByID.
|
WorkflowParam |
WorkflowParamServiceImpl.updateDetached(Registration registration,
WorkflowParam workflowParam)
updateDetached.
|
WorkflowParam |
WorkflowParamServiceImpl.updateDetached(WorkflowParam workflowParam)
updateDetached.
|
| Modifier and Type | Method and Description |
|---|---|
List<WorkflowParam> |
WorkflowParamServiceImpl.list()
list.
|
| Modifier and Type | Method and Description |
|---|---|
void |
WorkflowParamServiceImpl.delete(WorkflowParam workflowParam)
delete.
|
WorkflowParamValue |
WorkflowParamServiceImpl.findValueByID(WorkflowParam workflowParam,
Integer id)
findValueByID.
|
Integer |
WorkflowParamServiceImpl.insert(Registration registration,
WorkflowParam workflowParam)
insert.
|
Integer |
WorkflowParamServiceImpl.insert(WorkflowParam workflowParam)
Inserts a new WorkflowParam and returns its primary key.
|
void |
WorkflowParamServiceImpl.update(Registration registration,
WorkflowParam workflowParam)
update.
|
void |
WorkflowParamServiceImpl.update(WorkflowParam workflowParam)
update.
|
WorkflowParam |
WorkflowParamServiceImpl.updateDetached(Registration registration,
WorkflowParam workflowParam)
updateDetached.
|
WorkflowParam |
WorkflowParamServiceImpl.updateDetached(WorkflowParam workflowParam)
updateDetached.
|
| Modifier and Type | Method and Description |
|---|---|
WorkflowParam |
WorkflowParamDAO.findByID(Integer id)
findByID.
|
WorkflowParam |
WorkflowParamDAO.updateDetached(Registration registration,
WorkflowParam workflowParam)
updateDetached.
|
WorkflowParam |
WorkflowParamDAO.updateDetached(WorkflowParam workflowParam)
updateDetached.
|
| Modifier and Type | Method and Description |
|---|---|
List<WorkflowParam> |
WorkflowParamDAO.list()
list.
|
| Modifier and Type | Method and Description |
|---|---|
void |
WorkflowParamDAO.delete(WorkflowParam workflowParam)
delete.
|
Integer |
WorkflowParamDAO.insert(Registration registration,
WorkflowParam workflowParam)
insert.
|
Integer |
WorkflowParamDAO.insert(WorkflowParam workflowParam)
Inserts a new WorkflowParam and returns its primary key.
|
void |
WorkflowParamDAO.update(Registration registration,
WorkflowParam workflowParam)
update.
|
void |
WorkflowParamDAO.update(WorkflowParam workflowParam)
update.
|
WorkflowParam |
WorkflowParamDAO.updateDetached(Registration registration,
WorkflowParam workflowParam)
updateDetached.
|
WorkflowParam |
WorkflowParamDAO.updateDetached(WorkflowParam workflowParam)
updateDetached.
|
| Modifier and Type | Method and Description |
|---|---|
WorkflowParam |
WorkflowParamDAOHibernate.findByID(Integer id)
findByID.
|
WorkflowParam |
WorkflowParamDAOHibernate.updateDetached(Registration registration,
WorkflowParam workflowParam)
updateDetached.
|
WorkflowParam |
WorkflowParamDAOHibernate.updateDetached(WorkflowParam workflowParam)
updateDetached.
|
| Modifier and Type | Method and Description |
|---|---|
List<WorkflowParam> |
WorkflowParamDAOHibernate.list()
list.
|
| Modifier and Type | Method and Description |
|---|---|
void |
WorkflowParamDAOHibernate.delete(WorkflowParam workflowParam)
delete.
|
Integer |
WorkflowParamDAOHibernate.insert(Registration registration,
WorkflowParam workflowParam)
insert.
|
Integer |
WorkflowParamDAOHibernate.insert(WorkflowParam workflowParam)
Inserts a new WorkflowParam and returns its primary key.
|
void |
WorkflowParamDAOHibernate.update(Registration registration,
WorkflowParam workflowParam)
update.
|
void |
WorkflowParamDAOHibernate.update(WorkflowParam workflowParam)
update.
|
WorkflowParam |
WorkflowParamDAOHibernate.updateDetached(Registration registration,
WorkflowParam workflowParam)
updateDetached.
|
WorkflowParam |
WorkflowParamDAOHibernate.updateDetached(WorkflowParam workflowParam)
updateDetached.
|
| Modifier and Type | Method and Description |
|---|---|
protected static WorkflowParam |
MetadataWS.convertMapToWorkflowParam(Map<String,String> details,
Workflow workflow) |
| Modifier and Type | Method and Description |
|---|---|
SortedSet<WorkflowParam> |
MetadataWS.getWorkflowParams(String workflowAccession)
getWorkflowParams.
|
SortedSet<WorkflowParam> |
Metadata.getWorkflowParams(String swAccession)
getWorkflowParams.
|
SortedSet<WorkflowParam> |
MetadataNoConnection.getWorkflowParams(String swAccession)
getWorkflowParams.
|
SortedSet<WorkflowParam> |
MetadataDB.getWorkflowParams(String swAccession)
getWorkflowParams.
|
SortedSet<WorkflowParam> |
MetadataInMemory.getWorkflowParams(String swAccession) |
| Modifier and Type | Method and Description |
|---|---|
WorkflowParam |
WorkflowParam.clone() |
WorkflowParam |
WorkflowParamValue.getWorkflowParam()
Getter for the field
workflowParam. |
| Modifier and Type | Method and Description |
|---|---|
SortedSet<WorkflowParam> |
Workflow.getVisibleWorkflowParams()
getVisibleWorkflowParams.
|
SortedSet<WorkflowParam> |
Workflow.getVisibleWorkflowParamsWithDifferentValue()
getVisibleWorkflowParamsWithDifferentValue.
|
SortedSet<WorkflowParam> |
Workflow.getWorkflowParams()
Getter for the field
workflowParams. |
SortedSet<WorkflowParam> |
Workflow.getWorkflowParamsWithDifferentFileMetaType()
getWorkflowParamsWithDifferentFileMetaType.
|
| Modifier and Type | Method and Description |
|---|---|
int |
WorkflowParam.compareTo(WorkflowParam that) |
void |
WorkflowParamValue.setWorkflowParam(WorkflowParam workflowParam)
Setter for the field
workflowParam. |
| Modifier and Type | Method and Description |
|---|---|
void |
Workflow.setWorkflowParams(SortedSet<WorkflowParam> workflowParams)
Setter for the field
workflowParams. |
| Modifier and Type | Field and Description |
|---|---|
protected List<WorkflowParam> |
WorkflowParamList.tList |
| Modifier and Type | Method and Description |
|---|---|
List<WorkflowParam> |
WorkflowParamList.getList()
getList.
|
| Modifier and Type | Method and Description |
|---|---|
void |
WorkflowParamList.add(WorkflowParam ex)
add.
|
| Modifier and Type | Method and Description |
|---|---|
void |
WorkflowParamList.setList(List<WorkflowParam> list)
setList.
|
| Modifier and Type | Method and Description |
|---|---|
static WorkflowParam |
LaunchWorkflowUtil.getCurrentWorkflowParam(javax.servlet.http.HttpServletRequest request)
getCurrentWorkflowParam.
|
| Modifier and Type | Method and Description |
|---|---|
SortedSet<WorkflowParam> |
SummaryLine.getParams()
Getter for the field
params. |
SortedSet<WorkflowParam> |
SummaryData.getVisibleParams()
Getter for the field
visibleParams. |
| Modifier and Type | Method and Description |
|---|---|
List<Integer> |
LaunchWorkflowUtil.getIdsSelectedLane(javax.servlet.http.HttpServletRequest request,
WorkflowParam param)
getIdsSelectedLane.
|
| Modifier and Type | Method and Description |
|---|---|
static SortedSet<WorkflowRunParam> |
LaunchWorkflowUtil.getWorkflowRunParam(SortedSet<WorkflowParam> params)
getWorkflowRunParam.
|
void |
SummaryLine.setParams(SortedSet<WorkflowParam> params)
Setter for the field
params. |
void |
SummaryData.setVisibleParams(SortedSet<WorkflowParam> visibleParams)
Setter for the field
visibleParams. |
| Modifier and Type | Method and Description |
|---|---|
org.springframework.web.servlet.ModelAndView |
WorkflowParamController.handleDelete(javax.servlet.http.HttpServletRequest request,
javax.servlet.http.HttpServletResponse response,
WorkflowParam command)
Handles the user's request to delete their study.
|
org.springframework.web.servlet.ModelAndView |
WorkflowParamController.handleSubmit(javax.servlet.http.HttpServletRequest request,
javax.servlet.http.HttpServletResponse response,
WorkflowParam command)
Handles the user's request to submit a new study.
|
org.springframework.web.servlet.ModelAndView |
WorkflowParamController.handleUpdate(javax.servlet.http.HttpServletRequest request,
javax.servlet.http.HttpServletResponse response,
WorkflowParam command)
Handles the user's request to update their study.
|
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