| Package | Description | 
|---|---|
| net.sourceforge.seqware.common.dao | 
 More hibernate auto-generated. 
 | 
| net.sourceforge.seqware.common.dao.hibernate | 
 More hibernate auto-generated. 
 | 
| net.sourceforge.seqware.common.metadata | 
 Critical classes that effectively convert API calls into actions against the DB and web service. 
 | 
| net.sourceforge.seqware.common.model | 
 Hibernate model classes for the metadb. 
 | 
| Modifier and Type | Method and Description | 
|---|---|
WorkflowAttribute | 
WorkflowAttributeDAO.get(Integer id)
 get. 
 | 
| Modifier and Type | Method and Description | 
|---|---|
List<WorkflowAttribute> | 
WorkflowAttributeDAO.get(Workflow workflow)
 get. 
 | 
List<WorkflowAttribute> | 
WorkflowAttributeDAO.getAll()
 getAll. 
 | 
| Modifier and Type | Method and Description | 
|---|---|
Integer | 
WorkflowAttributeDAO.add(WorkflowAttribute workflowAttribute)
 add. 
 | 
void | 
WorkflowAttributeDAO.delete(WorkflowAttribute workflowAttribute)
 delete. 
 | 
void | 
WorkflowAttributeDAO.update(WorkflowAttribute workflowAttribute)
 update. 
 | 
| Modifier and Type | Method and Description | 
|---|---|
WorkflowAttribute | 
WorkflowAttributeDAOHibernate.get(Integer id)
 get. 
 | 
| Modifier and Type | Method and Description | 
|---|---|
List<WorkflowAttribute> | 
WorkflowAttributeDAOHibernate.get(Workflow workflow)
 get. 
 | 
List<WorkflowAttribute> | 
WorkflowAttributeDAOHibernate.getAll()
 getAll. 
 | 
| Modifier and Type | Method and Description | 
|---|---|
Integer | 
WorkflowAttributeDAOHibernate.add(WorkflowAttribute workflowAttribute)
 add. 
 | 
void | 
WorkflowAttributeDAOHibernate.delete(WorkflowAttribute workflowAttribute)
 delete. 
 | 
void | 
WorkflowAttributeDAOHibernate.update(WorkflowAttribute workflowAttribute)
 update. 
 | 
| Modifier and Type | Method and Description | 
|---|---|
void | 
MetadataWS.annotateWorkflow(int workflowSWID,
                WorkflowAttribute att,
                Boolean skip)
 annotateWorkflow. 
 | 
void | 
Metadata.annotateWorkflow(int workflowSWID,
                WorkflowAttribute att,
                Boolean skip)
 annotateWorkflow. 
 | 
void | 
MetadataNoConnection.annotateWorkflow(int workflowSWID,
                WorkflowAttribute att,
                Boolean skip)
 annotateWorkflow. 
 | 
void | 
MetadataDB.annotateWorkflow(int workflowSWID,
                WorkflowAttribute att,
                Boolean skip)
 annotateWorkflow. 
 | 
void | 
MetadataInMemory.annotateWorkflow(int workflowSWID,
                WorkflowAttribute att,
                Boolean skip)  | 
| Modifier and Type | Method and Description | 
|---|---|
void | 
MetadataWS.annotateWorkflow(int workflowSWID,
                Set<WorkflowAttribute> atts)
 annotateWorkflow. 
 | 
void | 
Metadata.annotateWorkflow(int workflowSWID,
                Set<WorkflowAttribute> atts)
 annotateWorkflow. 
 | 
void | 
MetadataNoConnection.annotateWorkflow(int workflowSWID,
                Set<WorkflowAttribute> atts)
 annotateWorkflow. 
 | 
void | 
MetadataDB.annotateWorkflow(int workflowSWID,
                Set<WorkflowAttribute> atts)
 annotateWorkflow. 
 | 
void | 
MetadataInMemory.annotateWorkflow(int workflowSWID,
                Set<WorkflowAttribute> atts)  | 
| Modifier and Type | Method and Description | 
|---|---|
Set<WorkflowAttribute> | 
Workflow.getAnnotations()  | 
Set<WorkflowAttribute> | 
Workflow.getWorkflowAttributes()
 Getter for the field  
workflowAttributes. | 
| Modifier and Type | Method and Description | 
|---|---|
void | 
Workflow.setWorkflowAttributes(Set<WorkflowAttribute> workflowAttributes)
 Setter for the field  
workflowAttributes. | 
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