| Package | Description | 
|---|---|
| net.sourceforge.seqware.common.dao | 
 More hibernate auto-generated. 
 | 
| net.sourceforge.seqware.common.dao.hibernate | 
 More hibernate auto-generated. 
 | 
| net.sourceforge.seqware.common.metadata | 
 Critical classes that effectively convert API calls into actions against the DB and web service. 
 | 
| net.sourceforge.seqware.common.model | 
 Hibernate model classes for the metadb. 
 | 
| Modifier and Type | Method and Description | 
|---|---|
List<StudyAttribute> | 
StudyAttributeDAO.findAll(Study study)
 findAll. 
 | 
List<StudyAttribute> | 
StudyAttributeDAO.list()
 list. 
 | 
| Modifier and Type | Method and Description | 
|---|---|
void | 
StudyAttributeDAO.delete(StudyAttribute studyAttribute)
 delete. 
 | 
void | 
StudyAttributeDAO.insert(StudyAttribute studyAttribute)
 insert. 
 | 
void | 
StudyAttributeDAO.update(StudyAttribute studyAttribute)
 update. 
 | 
| Modifier and Type | Method and Description | 
|---|---|
List<StudyAttribute> | 
StudyAttributeDAOHibernate.findAll(Study study)
 findAll. 
 | 
List<StudyAttribute> | 
StudyAttributeDAOHibernate.list()
 list. 
 | 
| Modifier and Type | Method and Description | 
|---|---|
void | 
StudyAttributeDAOHibernate.delete(StudyAttribute studyAttribute)
 delete. 
 | 
void | 
StudyAttributeDAOHibernate.insert(StudyAttribute studyAttribute)
 insert. 
 | 
void | 
StudyAttributeDAOHibernate.update(StudyAttribute studyAttribute)
 update. 
 | 
| Modifier and Type | Method and Description | 
|---|---|
void | 
MetadataWS.annotateStudy(int swid,
             StudyAttribute att,
             Boolean skip)
 annotateStudy. 
 | 
void | 
Metadata.annotateStudy(int studySWID,
             StudyAttribute att,
             Boolean skip)
 annotateStudy. 
 | 
void | 
MetadataNoConnection.annotateStudy(int studySWID,
             StudyAttribute att,
             Boolean skip)
 annotateStudy. 
 | 
void | 
MetadataDB.annotateStudy(int studySWID,
             StudyAttribute att,
             Boolean skip)
 annotateStudy. 
 | 
void | 
MetadataInMemory.annotateStudy(int studySWID,
             StudyAttribute att,
             Boolean skip)  | 
| Modifier and Type | Method and Description | 
|---|---|
void | 
MetadataWS.annotateStudy(int studySWID,
             Set<StudyAttribute> atts)
 annotateStudy. 
 | 
void | 
Metadata.annotateStudy(int studySWID,
             Set<StudyAttribute> atts)
 annotateStudy. 
 | 
void | 
MetadataNoConnection.annotateStudy(int studySWID,
             Set<StudyAttribute> atts)
 annotateStudy. 
 | 
void | 
MetadataDB.annotateStudy(int studySWID,
             Set<StudyAttribute> atts)
 annotateStudy. 
 | 
void | 
MetadataInMemory.annotateStudy(int studySWID,
             Set<StudyAttribute> atts)  | 
| Modifier and Type | Method and Description | 
|---|---|
Set<StudyAttribute> | 
Study.getAnnotations()  | 
Set<StudyAttribute> | 
Study.getStudyAttributes()
 Getter for the field  
studyAttributes. | 
| Modifier and Type | Method and Description | 
|---|---|
void | 
Study.setStudyAttributes(Set<StudyAttribute> studyAttributes)
 Setter for the field  
studyAttributes. | 
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