| Package | Description | 
|---|---|
| net.sourceforge.seqware.common.dao | 
 More hibernate auto-generated. 
 | 
| net.sourceforge.seqware.common.dao.hibernate | 
 More hibernate auto-generated. 
 | 
| net.sourceforge.seqware.common.metadata | 
 Critical classes that effectively convert API calls into actions against the DB and web service. 
 | 
| net.sourceforge.seqware.common.model | 
 Hibernate model classes for the metadb. 
 | 
| Modifier and Type | Method and Description | 
|---|---|
List<SampleAttribute> | 
SampleAttributeDAO.findAll(Sample sample)
 findAll. 
 | 
List<SampleAttribute> | 
SampleAttributeDAO.list()
 list. 
 | 
| Modifier and Type | Method and Description | 
|---|---|
void | 
SampleAttributeDAO.delete(SampleAttribute sampleAttribute)
 delete. 
 | 
void | 
SampleAttributeDAO.insert(SampleAttribute sampleAttribute)
 insert. 
 | 
void | 
SampleAttributeDAO.update(SampleAttribute sampleAttribute)
 update. 
 | 
| Modifier and Type | Method and Description | 
|---|---|
List<SampleAttribute> | 
SampleAttributeDAOHibernate.findAll(Sample sample)
 findAll. 
 | 
List<SampleAttribute> | 
SampleAttributeDAOHibernate.list()
 list. 
 | 
| Modifier and Type | Method and Description | 
|---|---|
void | 
SampleAttributeDAOHibernate.delete(SampleAttribute sampleAttribute)
 delete. 
 | 
void | 
SampleAttributeDAOHibernate.insert(SampleAttribute sampleAttribute)
 insert. 
 | 
void | 
SampleAttributeDAOHibernate.update(SampleAttribute sampleAttribute)
 update. 
 | 
| Modifier and Type | Method and Description | 
|---|---|
void | 
MetadataWS.annotateSample(int swid,
              SampleAttribute att,
              Boolean skip)
 annotateSample. 
 | 
void | 
Metadata.annotateSample(int sampleSWID,
              SampleAttribute att,
              Boolean skip)
 annotateSample. 
 | 
void | 
MetadataNoConnection.annotateSample(int sampleSWID,
              SampleAttribute att,
              Boolean skip)
 annotateSample. 
 | 
void | 
MetadataDB.annotateSample(int sampleSWID,
              SampleAttribute att,
              Boolean skip)
 annotateSample. 
 | 
void | 
MetadataInMemory.annotateSample(int sampleSWID,
              SampleAttribute att,
              Boolean skip)  | 
| Modifier and Type | Method and Description | 
|---|---|
void | 
MetadataWS.annotateSample(int sampleSWID,
              Set<SampleAttribute> atts)
 annotateSample. 
 | 
void | 
Metadata.annotateSample(int sampleSWID,
              Set<SampleAttribute> atts)
 annotateSample. 
 | 
void | 
MetadataNoConnection.annotateSample(int sampleSWID,
              Set<SampleAttribute> atts)
 annotateSample. 
 | 
void | 
MetadataDB.annotateSample(int sampleSWID,
              Set<SampleAttribute> atts)
 annotateSample. 
 | 
void | 
MetadataInMemory.annotateSample(int sampleSWID,
              Set<SampleAttribute> atts)  | 
| Modifier and Type | Method and Description | 
|---|---|
Set<SampleAttribute> | 
Sample.getAnnotations()  | 
Set<SampleAttribute> | 
Sample.getSampleAttributes()
 Getter for the field  
sampleAttributes. | 
| Modifier and Type | Method and Description | 
|---|---|
void | 
Sample.setSampleAttributes(Set<SampleAttribute> sampleAttributes)
 Setter for the field  
sampleAttributes. | 
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