| Package | Description |
|---|---|
| io.seqware.pipeline.api |
This package will store components of SeqWare that can be programmatically
called in order to manage the components of the SeqWare life-cycle.
|
| io.seqware.pipeline.plugins |
Newly written SeqWare plugins
|
| io.seqware.pipeline.plugins.sanity |
Base classes for the sanity check tool.
|
| io.seqware.pipeline.plugins.sanity.checks |
Various state checks.
|
| net.sourceforge.seqware.common.factory |
A sad direct database connector and a Hibernate factory.
|
| net.sourceforge.seqware.common.metadata |
Critical classes that effectively convert API calls into actions against the DB and web service.
|
| net.sourceforge.seqware.pipeline.bundle |
Utility classes for interacting with workflow bundles.
|
| net.sourceforge.seqware.pipeline.decider |
Interface for deciders.
|
| net.sourceforge.seqware.pipeline.deciders |
BasicDecider.
|
| net.sourceforge.seqware.pipeline.module |
This package provides the SeqWare module interface and API, including
common code and classes.
|
| net.sourceforge.seqware.pipeline.plugin |
Interface for plugins and the workflow launcher for some reason.
|
| net.sourceforge.seqware.pipeline.plugins |
Create and manipulate databases for extended testing.
|
| net.sourceforge.seqware.pipeline.plugins.batchmetadatainjection |
PDE's batch metadata injection utility
|
| net.sourceforge.seqware.pipeline.plugins.checkdb |
Check the metadb for errors in convention and structure.
|
| net.sourceforge.seqware.pipeline.plugins.fileprovenance |
Dump out the file provenance report to the user.
|
| net.sourceforge.seqware.pipeline.workflowV2 |
Back-end for the Java workflow language and Oozie engine.
|
| Class and Description |
|---|
| Metadata |
| Class and Description |
|---|
| Metadata |
| Class and Description |
|---|
| Metadata |
| MetadataDB
MetadataDB class.
|
| Class and Description |
|---|
| Metadata |
| Class and Description |
|---|
| MetadataDB
MetadataDB class.
|
| Class and Description |
|---|
| Metadata |
| MetadataDB
MetadataDB class.
|
| MetadataInMemory
This stores some metadata in memory as an exploration of running workflows without a running database or web service.
|
| MetadataNoConnection
MetadataNoConnection class.
|
| MetadataWS |
| Class and Description |
|---|
| Metadata |
| Class and Description |
|---|
| Metadata |
| Class and Description |
|---|
| Metadata |
| Class and Description |
|---|
| Metadata |
| Class and Description |
|---|
| Metadata |
| Class and Description |
|---|
| Metadata |
| Class and Description |
|---|
| Metadata |
| Class and Description |
|---|
| MetadataDB
MetadataDB class.
|
| Class and Description |
|---|
| Metadata |
| Class and Description |
|---|
| Metadata |
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