1. Introduction to SeqWare
  2. Installation
  3. Getting Started
  4. SeqWare Pipeline
    1. Overview
  5. SeqWare MetaDB
  6. SeqWare Portal
  7. SeqWare Web Service
  8. SeqWare Query Engine
  9. Glossary
  10. Frequently Asked Questions
  11. APIs
  12. Source Code
  13. Plugins
  14. Modules
  15. Advanced Topics

File Export


The reporting tools for the file provenance report (seqware files report) and workflow runs each generate tab-delimited reports that also include file output URLs. We currently do not have a bulk export tool in SeqWare but the ProvisionFiles module can be used to copy remote files from these reports to a local system.

For more information on using ProvisionFiles see the module descriptions page.